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In the title compound, C20H32N5O8P·2H2O, mol­ecules are linked to each other via inter­molecular N—H...O, N—H...N, O—H...O and O—H...N hydrogen bonds with the water mol­ecules acting as both acceptors and donors.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807000736/fl2089sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536807000736/fl2089Isup2.hkl
Contains datablock I

CCDC reference: 636631

Key indicators

  • Single-crystal X-ray study
  • T = 295 K
  • Mean [sigma](C-C) = 0.006 Å
  • R factor = 0.073
  • wR factor = 0.146
  • Data-to-parameter ratio = 14.4

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.96 PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 3000 Deg. PLAT340_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 6 PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 2
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Computing details top

Data collection: DENZO (Otwinowski & Minor, 1997); cell refinement: SCALE (Otwinowski & Minor, 1997); data reduction: SCALE; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.

9-{2-[Bis(pivaloyloxymethoxy)phosphinylmethoxy]ethyl}adenine dihydrate top
Crystal data top
C20H32N5O8P·2H2OZ = 2
Mr = 537.51F(000) = 572
Triclinic, P1Dx = 1.302 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0590 (12) ÅCell parameters from 4874 reflections
b = 11.221 (2) Åθ = 2.2–25.5°
c = 20.972 (4) ŵ = 0.16 mm1
α = 93.88 (3)°T = 295 K
β = 97.49 (3)°Block, colourless
γ = 102.97 (3)°0.60 × 0.40 × 0.40 mm
V = 1370.7 (5) Å3
Data collection top
MAC DIP 2030K
diffractometer
3870 reflections with I > 2σ(I)
Radiation source: rotate anodeRint = 0.048
Graphite monochromatorθmax = 25.5°, θmin = 2.2°
ω scansh = 06
4874 measured reflectionsk = 1313
4873 independent reflectionsl = 2525
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.073H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.146 w = 1/[σ2(Fo2) + (0.0129P)2 + 3.1097P]
where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
4873 reflectionsΔρmax = 0.26 e Å3
338 parametersΔρmin = 0.37 e Å3
6 restraintsExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0088 (10)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
P10.75341 (16)0.97471 (8)0.23621 (4)0.0436 (2)
O10.5946 (5)0.8015 (3)0.30524 (14)0.0668 (8)
O20.9603 (4)1.0277 (3)0.28273 (12)0.0597 (7)
O30.5472 (4)1.0370 (2)0.24088 (13)0.0564 (7)
O40.6831 (4)1.2485 (2)0.26641 (13)0.0538 (7)
O50.3871 (5)1.2529 (3)0.19149 (19)0.0882 (11)
O60.7855 (4)0.9847 (3)0.16328 (12)0.0576 (7)
O71.0203 (5)0.9437 (2)0.08986 (12)0.0600 (7)
O81.0841 (6)0.7989 (3)0.15323 (14)0.0726 (9)
N10.3901 (5)0.2943 (3)0.40129 (14)0.0474 (7)
N20.2308 (5)0.4655 (3)0.37057 (16)0.0543 (8)
N30.7956 (5)0.5952 (3)0.45640 (15)0.0489 (7)
N40.4979 (5)0.6617 (3)0.40835 (14)0.0478 (7)
N50.7522 (5)0.3167 (3)0.45867 (15)0.0537 (8)
H5A0.72800.23800.45720.064*
H5B0.88060.36210.47790.064*
C10.5904 (6)0.3685 (3)0.43117 (16)0.0434 (8)
C20.2279 (7)0.3469 (4)0.37362 (19)0.0568 (10)
H2C0.09370.29230.35360.068*
C30.4331 (6)0.5350 (3)0.40107 (16)0.0439 (8)
C40.7140 (7)0.6912 (3)0.44195 (18)0.0534 (9)
H4A0.79670.77180.45370.064*
C50.6147 (6)0.4960 (3)0.43082 (16)0.0433 (8)
C60.3599 (7)0.7461 (4)0.3851 (2)0.0602 (10)
H6A0.41990.82640.40900.072*
H6B0.20340.71620.39270.072*
C70.3626 (7)0.7573 (4)0.3141 (2)0.0590 (10)
H7A0.29850.67790.28950.071*
H7B0.27200.81410.29940.071*
C80.6271 (7)0.8168 (3)0.24040 (19)0.0571 (10)
H8A0.48140.79230.21210.069*
H8B0.72670.76630.22690.069*
C90.5557 (7)1.1388 (3)0.2865 (2)0.0564 (10)
H9A0.40151.14660.29000.068*
H9B0.62711.12510.32870.068*
C100.5739 (7)1.2998 (3)0.2189 (2)0.0537 (9)
C110.7212 (6)1.4214 (3)0.20564 (18)0.0598 (9)
C120.6020 (8)1.4683 (5)0.1465 (2)0.0805 (14)
H12A0.58701.41110.10920.121*
H12B0.69171.54700.13930.121*
H12C0.45291.47620.15420.121*
C130.9561 (8)1.4044 (4)0.1939 (2)0.0755 (13)
H13A0.93891.34820.15600.113*
H13B1.02551.37200.23050.113*
H13C1.05141.48220.18780.113*
C140.7479 (8)1.5118 (4)0.2660 (2)0.0659 (11)
H14A0.60001.52260.27310.099*
H14B0.84331.58960.25970.099*
H14C0.81721.47990.30280.099*
C151.0084 (7)1.0212 (4)0.1449 (2)0.0603 (11)
H15A1.03661.10600.13500.072*
H15B1.12421.01480.18020.072*
C161.0733 (7)0.8336 (4)0.10061 (19)0.0528 (9)
C171.1098 (7)0.7685 (4)0.0388 (2)0.0709 (10)
C181.2884 (8)0.8558 (5)0.0072 (2)0.0809 (14)
H18A1.43180.87750.03570.121*
H18B1.23640.92880.00110.121*
H18C1.30850.81550.03280.121*
C190.8825 (8)0.7325 (5)0.0069 (2)0.0875 (16)
H19A0.83180.80510.01690.131*
H19B0.77000.68010.01340.131*
H19C0.90300.68950.04600.131*
C201.1993 (11)0.6558 (5)0.0550 (3)0.0978 (18)
H20A1.34180.68110.08380.147*
H20B1.22270.61370.01590.147*
H20C1.08960.60160.07540.147*
OA0.1519 (6)0.0473 (3)0.41309 (15)0.0782 (9)
H1A0.074 (7)0.026 (4)0.3769 (11)0.094*
H1B0.259 (6)0.104 (3)0.409 (2)0.094*
OB0.7432 (7)0.0551 (4)0.4682 (2)0.0882 (11)
H2A0.759 (8)0.030 (5)0.5042 (13)0.106*
H2B0.860 (5)0.059 (5)0.452 (2)0.106*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
P10.0494 (5)0.0384 (5)0.0415 (5)0.0099 (4)0.0029 (4)0.0019 (4)
O10.0658 (18)0.0654 (19)0.0608 (18)0.0022 (14)0.0022 (14)0.0221 (14)
O20.0532 (16)0.0731 (19)0.0444 (15)0.0048 (13)0.0022 (12)0.0006 (13)
O30.0604 (16)0.0372 (14)0.0703 (18)0.0172 (12)0.0031 (13)0.0100 (12)
O40.0615 (16)0.0340 (13)0.0620 (17)0.0071 (11)0.0024 (13)0.0053 (12)
O50.0539 (19)0.0597 (19)0.138 (3)0.0010 (15)0.0161 (19)0.018 (2)
O60.0549 (16)0.0676 (18)0.0454 (15)0.0051 (13)0.0049 (12)0.0075 (13)
O70.0800 (19)0.0565 (17)0.0484 (15)0.0230 (14)0.0152 (14)0.0064 (13)
O80.093 (2)0.077 (2)0.0554 (18)0.0306 (18)0.0114 (16)0.0180 (16)
N10.0485 (17)0.0422 (17)0.0480 (17)0.0080 (13)0.0009 (14)0.0023 (13)
N20.0482 (18)0.053 (2)0.059 (2)0.0113 (15)0.0008 (15)0.0081 (15)
N30.0467 (17)0.0441 (17)0.0533 (18)0.0081 (14)0.0033 (14)0.0023 (14)
N40.0568 (19)0.0423 (17)0.0467 (17)0.0140 (14)0.0096 (14)0.0102 (13)
N50.0561 (19)0.0424 (17)0.059 (2)0.0127 (14)0.0037 (15)0.0033 (14)
C10.052 (2)0.0417 (19)0.0370 (18)0.0127 (16)0.0066 (15)0.0032 (15)
C20.055 (2)0.051 (2)0.056 (2)0.0023 (18)0.0039 (18)0.0033 (18)
C30.054 (2)0.0426 (19)0.0364 (18)0.0132 (16)0.0056 (15)0.0059 (15)
C40.063 (2)0.042 (2)0.052 (2)0.0101 (18)0.0028 (18)0.0029 (17)
C50.046 (2)0.044 (2)0.0394 (18)0.0108 (15)0.0057 (15)0.0024 (15)
C60.069 (3)0.054 (2)0.067 (3)0.031 (2)0.013 (2)0.014 (2)
C70.057 (2)0.050 (2)0.072 (3)0.0178 (19)0.002 (2)0.016 (2)
C80.076 (3)0.0352 (19)0.059 (2)0.0109 (18)0.006 (2)0.0095 (17)
C90.073 (3)0.037 (2)0.062 (2)0.0146 (18)0.021 (2)0.0031 (17)
C100.052 (2)0.038 (2)0.070 (3)0.0125 (17)0.0033 (19)0.0026 (18)
C110.0555 (18)0.0473 (18)0.077 (2)0.0113 (14)0.0060 (15)0.0080 (16)
C120.077 (3)0.084 (3)0.079 (3)0.017 (3)0.003 (3)0.027 (3)
C130.074 (3)0.076 (3)0.085 (3)0.021 (2)0.030 (3)0.019 (3)
C140.078 (3)0.042 (2)0.079 (3)0.017 (2)0.011 (2)0.002 (2)
C150.071 (3)0.049 (2)0.058 (2)0.0022 (19)0.022 (2)0.0003 (19)
C160.053 (2)0.054 (2)0.049 (2)0.0085 (18)0.0043 (17)0.0061 (18)
C170.076 (2)0.069 (2)0.078 (2)0.0248 (18)0.0219 (18)0.0068 (18)
C180.081 (3)0.085 (3)0.084 (3)0.020 (3)0.038 (3)0.009 (3)
C190.074 (3)0.104 (4)0.072 (3)0.010 (3)0.006 (3)0.026 (3)
C200.133 (5)0.078 (4)0.101 (4)0.054 (4)0.034 (4)0.012 (3)
OA0.087 (2)0.069 (2)0.064 (2)0.0063 (17)0.0066 (17)0.0173 (17)
OB0.103 (3)0.076 (2)0.100 (3)0.041 (2)0.021 (2)0.028 (2)
Geometric parameters (Å, º) top
P1—O21.465 (3)C8—H8B0.9700
P1—O31.573 (3)C9—H9A0.9700
P1—O61.575 (3)C9—H9B0.9700
P1—C81.778 (4)C10—C111.517 (5)
O1—C81.416 (5)C11—C131.526 (5)
O1—C71.423 (5)C11—C141.535 (5)
O3—C91.427 (4)C11—C121.537 (5)
O4—C101.357 (4)C12—H12A0.9600
O4—C91.421 (4)C12—H12B0.9600
O5—C101.188 (5)C12—H12C0.9600
O6—C151.432 (5)C13—H13A0.9600
O7—C161.370 (5)C13—H13B0.9600
O7—C151.417 (4)C13—H13C0.9600
O8—C161.194 (4)C14—H14A0.9600
N1—C21.345 (5)C14—H14B0.9600
N1—C11.355 (4)C14—H14C0.9600
N2—C21.333 (5)C15—H15A0.9700
N2—C31.349 (5)C15—H15B0.9700
N3—C41.319 (5)C16—C171.510 (5)
N3—C51.395 (4)C17—C201.526 (6)
N4—C41.361 (5)C17—C191.527 (6)
N4—C31.379 (4)C17—C181.540 (6)
N4—C61.465 (4)C18—H18A0.9600
N5—C11.336 (4)C18—H18B0.9600
N5—H5A0.8600C18—H18C0.9600
N5—H5B0.8600C19—H19A0.9600
C1—C51.406 (5)C19—H19B0.9600
C2—H2C0.9300C19—H19C0.9600
C3—C51.365 (5)C20—H20A0.9600
C4—H4A0.9300C20—H20B0.9600
C6—C71.505 (6)C20—H20C0.9600
C6—H6A0.9700OA—H1A0.83 (3)
C6—H6B0.9700OA—H1B0.82 (4)
C7—H7A0.9700OB—H2A0.83 (3)
C7—H7B0.9700OB—H2B0.82 (4)
C8—H8A0.9700
O2—P1—O3115.52 (16)O4—C10—C11111.4 (3)
O2—P1—O6114.60 (15)C10—C11—C13109.7 (3)
O3—P1—O6101.49 (15)C10—C11—C14107.1 (3)
O2—P1—C8115.71 (19)C13—C11—C14109.7 (3)
O3—P1—C8102.77 (18)C10—C11—C12109.4 (3)
O6—P1—C8104.97 (17)C13—C11—C12110.5 (4)
C8—O1—C7114.7 (3)C14—C11—C12110.3 (3)
C9—O3—P1123.6 (3)C11—C12—H12A109.5
C10—O4—C9116.7 (3)C11—C12—H12B109.5
C15—O6—P1121.3 (2)H12A—C12—H12B109.5
C16—O7—C15117.0 (3)C11—C12—H12C109.5
C2—N1—C1118.3 (3)H12A—C12—H12C109.5
C2—N2—C3109.6 (3)H12B—C12—H12C109.5
C4—N3—C5103.0 (3)C11—C13—H13A109.5
C4—N4—C3105.8 (3)C11—C13—H13B109.5
C4—N4—C6127.5 (3)H13A—C13—H13B109.5
C3—N4—C6126.6 (3)C11—C13—H13C109.5
C1—N5—H5A120.0H13A—C13—H13C109.5
C1—N5—H5B120.0H13B—C13—H13C109.5
H5A—N5—H5B120.0C11—C14—H14A109.5
N5—C1—N1118.5 (3)C11—C14—H14B109.5
N5—C1—C5124.1 (3)H14A—C14—H14B109.5
N1—C1—C5117.4 (3)C11—C14—H14C109.5
N2—C2—N1129.7 (4)H14A—C14—H14C109.5
N2—C2—H2C115.2H14B—C14—H14C109.5
N1—C2—H2C115.2O7—C15—O6109.0 (3)
N2—C3—C5127.8 (3)O7—C15—H15A109.9
N2—C3—N4126.3 (3)O6—C15—H15A109.9
C5—C3—N4105.9 (3)O7—C15—H15B109.9
N3—C4—N4114.0 (3)O6—C15—H15B109.9
N3—C4—H4A123.0H15A—C15—H15B108.3
N4—C4—H4A123.0O8—C16—O7121.2 (4)
C3—C5—N3111.2 (3)O8—C16—C17127.6 (4)
C3—C5—C1117.3 (3)O7—C16—C17111.1 (3)
N3—C5—C1131.5 (3)C16—C17—C20108.9 (4)
N4—C6—C7111.0 (3)C16—C17—C19108.7 (3)
N4—C6—H6A109.4C20—C17—C19111.3 (4)
C7—C6—H6A109.4C16—C17—C18109.3 (4)
N4—C6—H6B109.4C20—C17—C18109.1 (4)
C7—C6—H6B109.4C19—C17—C18109.6 (4)
H6A—C6—H6B108.0C17—C18—H18A109.5
O1—C7—C6107.5 (3)C17—C18—H18B109.5
O1—C7—H7A110.2H18A—C18—H18B109.5
C6—C7—H7A110.2C17—C18—H18C109.5
O1—C7—H7B110.2H18A—C18—H18C109.5
C6—C7—H7B110.2H18B—C18—H18C109.5
H7A—C7—H7B108.5C17—C19—H19A109.5
O1—C8—P1107.8 (3)C17—C19—H19B109.5
O1—C8—H8A110.2H19A—C19—H19B109.5
P1—C8—H8A110.2C17—C19—H19C109.5
O1—C8—H8B110.2H19A—C19—H19C109.5
P1—C8—H8B110.2H19B—C19—H19C109.5
H8A—C8—H8B108.5C17—C20—H20A109.5
O4—C9—O3109.9 (3)C17—C20—H20B109.5
O4—C9—H9A109.7H20A—C20—H20B109.5
O3—C9—H9A109.7C17—C20—H20C109.5
O4—C9—H9B109.7H20A—C20—H20C109.5
O3—C9—H9B109.7H20B—C20—H20C109.5
H9A—C9—H9B108.2H1A—OA—H1B107 (2)
O5—C10—O4123.0 (4)H2A—OB—H2B110 (3)
O5—C10—C11125.6 (4)
O2—P1—O3—C90.4 (3)C4—N4—C6—C7101.3 (4)
O6—P1—O3—C9124.2 (3)C3—N4—C6—C779.5 (5)
C8—P1—O3—C9127.3 (3)C8—O1—C7—C6179.7 (3)
O2—P1—O6—C1511.3 (3)N4—C6—C7—O159.2 (4)
O3—P1—O6—C15136.5 (3)C7—O1—C8—P1119.1 (3)
C8—P1—O6—C15116.8 (3)O2—P1—C8—O152.4 (3)
C2—N1—C1—N5179.9 (3)O3—P1—C8—O174.5 (3)
C2—N1—C1—C50.3 (5)O6—P1—C8—O1179.7 (3)
C3—N2—C2—N10.0 (6)C10—O4—C9—O378.1 (4)
C1—N1—C2—N20.2 (6)P1—O3—C9—O476.5 (4)
C2—N2—C3—C50.6 (5)C9—O4—C10—O55.1 (6)
C2—N2—C3—N4179.4 (3)C9—O4—C10—C11175.4 (3)
C4—N4—C3—N2180.0 (3)O5—C10—C11—C13127.3 (5)
C6—N4—C3—N20.6 (6)O4—C10—C11—C1352.2 (4)
C4—N4—C3—C50.0 (4)O5—C10—C11—C14113.8 (5)
C6—N4—C3—C5179.4 (3)O4—C10—C11—C1466.8 (4)
C5—N3—C4—N41.1 (4)O5—C10—C11—C125.9 (6)
C3—N4—C4—N30.7 (4)O4—C10—C11—C12173.6 (3)
C6—N4—C4—N3179.9 (3)C16—O7—C15—O684.2 (4)
N2—C3—C5—N3179.3 (3)P1—O6—C15—O7136.3 (3)
N4—C3—C5—N30.7 (4)C15—O7—C16—O87.9 (6)
N2—C3—C5—C11.1 (6)C15—O7—C16—C17172.7 (3)
N4—C3—C5—C1179.0 (3)O8—C16—C17—C208.3 (6)
C4—N3—C5—C31.1 (4)O7—C16—C17—C20172.4 (4)
C4—N3—C5—C1178.5 (4)O8—C16—C17—C19113.1 (5)
N5—C1—C5—C3179.6 (3)O7—C16—C17—C1966.2 (4)
N1—C1—C5—C30.8 (5)O8—C16—C17—C18127.3 (5)
N5—C1—C5—N30.0 (6)O7—C16—C17—C1853.4 (5)
N1—C1—C5—N3179.7 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N5—H5A···OB0.862.102.945 (5)166
N5—H5B···N3i0.862.182.988 (4)156
OA—H1A···O2ii0.83 (3)2.01 (2)2.801 (4)160 (4)
OA—H1B···N10.82 (4)2.12 (3)2.867 (4)150 (5)
OB—H2A···OAiii0.83 (3)2.06 (4)2.867 (5)169 (5)
OB—H2B···OAiv0.82 (4)2.07 (3)2.882 (5)174 (6)
Symmetry codes: (i) x+2, y+1, z+1; (ii) x1, y1, z; (iii) x+1, y, z+1; (iv) x+1, y, z.
 

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