Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270109036440/fg3132sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270109036440/fg3132Isup2.hkl |
CCDC reference: 760125
The title compound was prepared as described by Lumsden (1905). The product was recrystallized from ethanol using a slow evaporation technique at room temperature with a 71% yield of colourless plate-like crystals [m.p. 458–460 K (literature value 459–460.5 K; McElvain & Starn, 1955)]. Spectroscopic analysis: 1H NMR (300 MHz, CDCl3, Me4Si): δ 5.69 (1H, s, N—H), 5.52 (1H, s, N—H), 2.15 (1H, tt, J = 3.5 and 11.6 Hz, H1), 1.93–1.69 (5H, m, H2, H3, H4, H5, H6), 1.48–1.30 (5H, m, H2, H3, H4, H5, H6) p.p.m.; 13C NMR (75 MHz, CDCl3, Me4Si): δ 178.7 (C6), 44.8 (C1), 297 (C2, C6), 25.7 (C3, C5), 25.6 (C4) p.p.m.; IR (Medium?): νmax 3337 (m, b, N—H), 3154 (m, b, N—H), 2927 (m, sh, C—H), 2851 (m, sh, C—H), 1635 (s, C═O), 1428 (s, C—N), 1344 (w, sh), 1285 (m, sh), 1230 (m, sh), 1154 (m, sh), 666 (s) cm-1.
All H atoms were positioned geometrically and allowed to ride on their parent atoms [C—H = 1.00 (CH) or 0.99 Å (CH2), and N—H = 0.88 Å (NH2), and Uiso(H) = 1.2Ueq(C,N)].
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and SCHAKAL99 (Keller, 1999); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
C7H13NO | F(000) = 560 |
Mr = 127.18 | Dx = 1.115 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2522 reflections |
a = 24.624 (3) Å | θ = 2.2–28.2° |
b = 6.6934 (9) Å | µ = 0.07 mm−1 |
c = 9.4030 (13) Å | T = 173 K |
β = 102.088 (3)° | Plate, colourless |
V = 1515.4 (3) Å3 | 0.48 × 0.37 × 0.10 mm |
Z = 8 |
Bruker APEXII CCD area-detector diffractometer | 1440 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.068 |
Graphite monochromator | θmax = 28.0°, θmin = 1.7° |
ϕ and ω scans | h = −32→28 |
9664 measured reflections | k = −8→8 |
1828 independent reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0709P)2 + 0.6992P] where P = (Fo2 + 2Fc2)/3 |
1828 reflections | (Δ/σ)max < 0.001 |
82 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C7H13NO | V = 1515.4 (3) Å3 |
Mr = 127.18 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 24.624 (3) Å | µ = 0.07 mm−1 |
b = 6.6934 (9) Å | T = 173 K |
c = 9.4030 (13) Å | 0.48 × 0.37 × 0.10 mm |
β = 102.088 (3)° |
Bruker APEXII CCD area-detector diffractometer | 1440 reflections with I > 2σ(I) |
9664 measured reflections | Rint = 0.068 |
1828 independent reflections |
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.28 e Å−3 |
1828 reflections | Δρmin = −0.16 e Å−3 |
82 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.19171 (6) | 0.5284 (2) | 0.51551 (14) | 0.0226 (3) | |
C2 | 0.14896 (6) | 0.3714 (2) | 0.52825 (15) | 0.0263 (3) | |
H2 | 0.1491 | 0.3504 | 0.6336 | 0.032* | |
C3 | 0.16303 (6) | 0.1743 (2) | 0.4640 (2) | 0.0354 (4) | |
H3A | 0.1655 | 0.1952 | 0.3613 | 0.043* | |
H3B | 0.1998 | 0.1276 | 0.5179 | 0.043* | |
C4 | 0.11965 (7) | 0.0152 (2) | 0.4715 (2) | 0.0438 (5) | |
H4A | 0.1288 | −0.1079 | 0.4232 | 0.053* | |
H4B | 0.1203 | −0.0172 | 0.5746 | 0.053* | |
C5 | 0.06229 (7) | 0.0844 (3) | 0.3991 (2) | 0.0444 (5) | |
H5A | 0.0348 | −0.0179 | 0.4127 | 0.053* | |
H5B | 0.0603 | 0.0994 | 0.2933 | 0.053* | |
C6 | 0.04791 (7) | 0.2807 (3) | 0.4606 (3) | 0.0522 (5) | |
H6A | 0.0454 | 0.2616 | 0.5634 | 0.063* | |
H6B | 0.0112 | 0.3260 | 0.4059 | 0.063* | |
C7 | 0.09113 (7) | 0.4401 (2) | 0.4519 (2) | 0.0414 (4) | |
H7A | 0.0815 | 0.5645 | 0.4979 | 0.050* | |
H7B | 0.0910 | 0.4694 | 0.3486 | 0.050* | |
N1 | 0.21894 (5) | 0.61139 (19) | 0.63692 (12) | 0.0285 (3) | |
H1A | 0.2439 | 0.7044 | 0.6337 | 0.034* | |
H1B | 0.2121 | 0.5738 | 0.7211 | 0.034* | |
O1 | 0.20016 (4) | 0.57749 (15) | 0.39458 (10) | 0.0275 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0252 (7) | 0.0248 (7) | 0.0192 (6) | 0.0012 (5) | 0.0077 (5) | −0.0012 (5) |
C2 | 0.0306 (8) | 0.0292 (7) | 0.0208 (7) | −0.0061 (6) | 0.0094 (6) | −0.0008 (5) |
C3 | 0.0284 (8) | 0.0242 (8) | 0.0537 (10) | 0.0021 (6) | 0.0088 (7) | 0.0015 (7) |
C4 | 0.0433 (10) | 0.0237 (8) | 0.0644 (12) | −0.0036 (7) | 0.0116 (9) | 0.0025 (7) |
C5 | 0.0365 (10) | 0.0343 (9) | 0.0626 (12) | −0.0110 (7) | 0.0109 (8) | −0.0052 (8) |
C6 | 0.0282 (9) | 0.0417 (10) | 0.0902 (16) | −0.0058 (7) | 0.0204 (9) | −0.0088 (10) |
C7 | 0.0289 (8) | 0.0277 (8) | 0.0697 (12) | 0.0002 (6) | 0.0148 (8) | −0.0046 (8) |
N1 | 0.0354 (7) | 0.0338 (7) | 0.0171 (6) | −0.0107 (5) | 0.0074 (5) | −0.0014 (5) |
O1 | 0.0355 (6) | 0.0317 (6) | 0.0170 (5) | −0.0080 (4) | 0.0096 (4) | −0.0015 (4) |
C1—O1 | 1.2424 (16) | C4—H4B | 0.9900 |
C1—N1 | 1.3195 (18) | C5—C6 | 1.507 (3) |
C1—C2 | 1.5099 (19) | C5—H5A | 0.9900 |
C2—C3 | 1.521 (2) | C5—H5B | 0.9900 |
C2—C7 | 1.525 (2) | C6—C7 | 1.521 (2) |
C2—H2 | 1.0000 | C6—H6A | 0.9900 |
C3—C4 | 1.520 (2) | C6—H6B | 0.9900 |
C3—H3A | 0.9900 | C7—H7A | 0.9900 |
C3—H3B | 0.9900 | C7—H7B | 0.9900 |
C4—C5 | 1.507 (3) | N1—H1A | 0.8800 |
C4—H4A | 0.9900 | N1—H1B | 0.8800 |
O1—C1—N1 | 121.89 (13) | C4—C5—C6 | 111.58 (16) |
O1—C1—C2 | 120.66 (12) | C4—C5—H5A | 109.3 |
N1—C1—C2 | 117.44 (11) | C6—C5—H5A | 109.3 |
C1—C2—C3 | 110.59 (11) | C4—C5—H5B | 109.3 |
C1—C2—C7 | 110.51 (12) | C6—C5—H5B | 109.3 |
C3—C2—C7 | 110.02 (13) | H5A—C5—H5B | 108.0 |
C1—C2—H2 | 108.6 | C5—C6—C7 | 111.55 (14) |
C3—C2—H2 | 108.6 | C5—C6—H6A | 109.3 |
C7—C2—H2 | 108.6 | C7—C6—H6A | 109.3 |
C4—C3—C2 | 111.62 (13) | C5—C6—H6B | 109.3 |
C4—C3—H3A | 109.3 | C7—C6—H6B | 109.3 |
C2—C3—H3A | 109.3 | H6A—C6—H6B | 108.0 |
C4—C3—H3B | 109.3 | C6—C7—C2 | 110.97 (15) |
C2—C3—H3B | 109.3 | C6—C7—H7A | 109.4 |
H3A—C3—H3B | 108.0 | C2—C7—H7A | 109.4 |
C5—C4—C3 | 111.40 (14) | C6—C7—H7B | 109.4 |
C5—C4—H4A | 109.3 | C2—C7—H7B | 109.4 |
C3—C4—H4A | 109.3 | H7A—C7—H7B | 108.0 |
C5—C4—H4B | 109.3 | C1—N1—H1A | 120.0 |
C3—C4—H4B | 109.3 | C1—N1—H1B | 120.0 |
H4A—C4—H4B | 108.0 | H1A—N1—H1B | 120.0 |
O1—C1—C2—C3 | 59.46 (18) | C3—C4—C5—C6 | −54.5 (2) |
N1—C1—C2—C3 | −121.17 (14) | C4—C5—C6—C7 | 55.1 (2) |
O1—C1—C2—C7 | −62.62 (18) | C5—C6—C7—C2 | −56.1 (2) |
N1—C1—C2—C7 | 116.75 (15) | C1—C2—C7—C6 | 178.50 (14) |
C1—C2—C3—C4 | −178.32 (13) | C3—C2—C7—C6 | 56.09 (19) |
C7—C2—C3—C4 | −55.96 (18) | C2—C1—C1i—C2i | −90.99 (16) |
C2—C3—C4—C5 | 55.4 (2) | N1—C1—C2—H2 | −2.2 |
Symmetry code: (i) x, −y+1, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1ii | 0.88 | 2.06 | 2.9394 (16) | 175 |
N1—H1B···O1i | 0.88 | 1.99 | 2.8549 (15) | 166 |
C2—H2···O1i | 1.00 | 2.56 | 3.4283 (17) | 145 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1/2, −y+3/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C7H13NO |
Mr | 127.18 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 173 |
a, b, c (Å) | 24.624 (3), 6.6934 (9), 9.4030 (13) |
β (°) | 102.088 (3) |
V (Å3) | 1515.4 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.48 × 0.37 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9664, 1828, 1440 |
Rint | 0.068 |
(sin θ/λ)max (Å−1) | 0.660 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.143, 1.05 |
No. of reflections | 1828 |
No. of parameters | 82 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.16 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and SCHAKAL99 (Keller, 1999), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.88 | 2.06 | 2.9394 (16) | 175 |
N1—H1B···O1ii | 0.88 | 1.99 | 2.8549 (15) | 166 |
C2—H2···O1ii | 1.00 | 2.56 | 3.4283 (17) | 145 |
Symmetry codes: (i) −x+1/2, −y+3/2, −z+1; (ii) x, −y+1, z+1/2. |
The hydrogen-bonding capabilities of amides have been extensively researched (Taylor et al., 1984; Leiserowitz & Schmidt, 1969), and they have been exploited directly, or as precursors, in crystal engineering and the pharmaceutical industries (Reddy et al., 2006), to name but a few. In addition, a systematic study of the effect of different 2,6 substitution on the structure of phenylamides and their consequent thermal behaviour has been published (Omondi et al., 2005), as well as a similar structural study of a series of slightly more complex 1-arylcycloalkanecarboxamides (Lemmerer & Michael, 2008). In a study of symmetric and asymmetric imides and their polymorphs, the title compound, (I), was synthesized as a precursor for imide synthesis.
Compound (I) crystallizes in space group C2/c with one molecule in the asymmetric unit (Fig. 1). The molecule adopts a chair conformation in which the amide group is rotated to be almost perpendicular to the cyclohexyl ring; atom N1 is orientated such that it lies almost eclipsed relative to atom H2, the N1—C1—C2—H2 torsion angle being -2.2°.
The structure of (I) contains two distinctive types of N—H···O hydrogen bonds. One of these [N1—H1A···O1i; symmetry code (i) -x + 1/2, -y + 3/2, -z + 1; Fig. 2 and Table 1] is a hydrogen bond between two amide molecules to form an R22(8) dimer (Etter et al., 1990; Bernstein et al., 1995), with the molecules related to each other through a centre of inversion. The other [N1—H1B···O1ii; symmetry code: (ii) x, -y + 1, z + 1/2; Fig. 2 and Table 1] is an interaction along the c axis to form a C4 hydrogen-bonded chain, in which the molecules are related to each other by a c-glide plane. This C4 chain is further stabilized by a C—H···O interaction (C2—H2···O1ii; Fig. 2 and Table 1). The combination of the two N—H···O interactions results in the hydrogen-bonded dimers being almost perpendicular to each other [C1—C2···C2ii—C1ii = -90.99 (16)°] and in the formation of a hydrogen-bonded network parallel to (011). The combination of the two hydrogen bonds also results in a motif that can be described by the secondary graph set R46(16).
A search of the Cambridge Structural Database (CSD; Version 5.30, November 2008 release; Allen, 2002) led to the discovery of the isomorphous structure of cyclopentanecarboxamide (CSD refcode BARFEF; Winter et al., 1981), which has an identical hydrogen-bonding pattern despite the presence of disorder in the five-membered ring. The R46(16) motif can also be found in the structures of 1-phenylcyclopentanecarboxamide and 1-(2-bromophenyl)cyclohexanecarboxamide, indicating that replacing atom H2 with a more bulky group does not necessarily disrupt this hydrogen-bond pattern (Lemmerer & Michael, 2008). However, a C—H···O interaction does seem to be required, as it is present in all four structures. In the case of 1-phenylcyclopentanecarboxamide and 1-(2-bromophenyl)cyclohexanecarboxamide, the C—H···O interaction occurs between the amide O atom and one of the ring CH2 groups.