Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270103024338/fg1711sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270103024338/fg1711Isup2.hkl |
CCDC reference: 229070
To a refluxing suspension of MnCl2·4H2O (0.40 g, 2 mmol) and H3ida (0.31 g, 2 mmol) in of water (50 ml), NaOH (0.1M) was added slowly, dropwise via a dropping funnel, under continuous stirring until the mixture became clear. The mixture was refluxed and stirred for 8 h. The resulting hot solution was filtered, and the filtrate was left undisturbed for 4 h at room temperature, resulting in the deposition of pale-yellow crystals of (I).
Water H atoms and the H atom of the carboxy group were located from difference maps and refined with a DFIX restraint of 0.85 (2) Å applied to the three O—H distances. H atoms bonded to atoms of the aromatic ring were placed in calculated positions and treated as riding atoms.
Data collection: SMART (Siemens,1996); cell refinement: SAINT (Siemens,1994); data reduction: XPREP in SHELXTL (Siemens,1994); program(s) used to solve structure: SHELXTL; program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
[Mn(C5H3N2O4)2(H2O)2] | F(000) = 406 |
Mr = 401.16 | Dx = 1.875 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1282 reflections |
a = 5.0550 (3) Å | θ = 1.8–25.0° |
b = 22.9305 (7) Å | µ = 1.00 mm−1 |
c = 6.5918 (4) Å | T = 293 K |
β = 111.596 (2)° | Needle, pale yellow |
V = 710.44 (6) Å3 | 0.49 × 0.15 × 0.14 mm |
Z = 2 |
Siemans SMART CCD area-detector diffractometer | 1216 independent reflections |
Radiation source: fine-focus sealed tube | 852 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: empirical (using intensity measurements) (SADABS, Sheldrick, 1996) | h = −6→5 |
Tmin = 0.836, Tmax = 0.870 | k = −14→27 |
2152 measured reflections | l = −7→7 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | w = 1/[σ2(Fo2) + (0.08P)2] where P = (Fo2 + 2Fc2)/3 |
1216 reflections | (Δ/σ)max < 0.001 |
126 parameters | Δρmax = 0.74 e Å−3 |
3 restraints | Δρmin = −1.13 e Å−3 |
[Mn(C5H3N2O4)2(H2O)2] | V = 710.44 (6) Å3 |
Mr = 401.16 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 5.0550 (3) Å | µ = 1.00 mm−1 |
b = 22.9305 (7) Å | T = 293 K |
c = 6.5918 (4) Å | 0.49 × 0.15 × 0.14 mm |
β = 111.596 (2)° |
Siemans SMART CCD area-detector diffractometer | 1216 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS, Sheldrick, 1996) | 852 reflections with I > 2σ(I) |
Tmin = 0.836, Tmax = 0.870 | Rint = 0.049 |
2152 measured reflections |
R[F2 > 2σ(F2)] = 0.060 | 3 restraints |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.74 e Å−3 |
1216 reflections | Δρmin = −1.13 e Å−3 |
126 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn | 0.5000 | 0.0000 | 0.0000 | 0.0293 (4) | |
O1 | 0.6557 (7) | 0.02485 (14) | −0.2590 (6) | 0.0298 (8) | |
O2 | 0.6865 (7) | 0.09792 (15) | −0.4728 (6) | 0.0353 (9) | |
O3 | 0.5569 (9) | 0.20426 (17) | −0.5240 (7) | 0.0437 (10) | |
H3 | 0.631 (15) | 0.1705 (16) | −0.509 (12) | 0.08 (3)* | |
O4 | 0.3520 (8) | 0.26847 (15) | −0.3793 (7) | 0.0468 (11) | |
O5 | 0.8819 (8) | 0.03964 (17) | 0.2418 (6) | 0.0381 (10) | |
H5A | 0.852 (12) | 0.056 (2) | 0.345 (7) | 0.050* | |
H5B | 1.036 (6) | 0.0197 (18) | 0.295 (8) | 0.026 (14)* | |
N1 | 0.2267 (8) | 0.18239 (16) | −0.1269 (6) | 0.0279 (10) | |
H1 | 0.1562 | 0.2155 | −0.1114 | 0.034* | |
N2 | 0.3435 (8) | 0.08980 (16) | −0.0822 (6) | 0.0254 (9) | |
C1 | 0.2162 (10) | 0.1338 (2) | −0.0218 (8) | 0.0280 (12) | |
H1A | 0.1310 | 0.1307 | 0.0811 | 0.034* | |
C2 | 0.4396 (10) | 0.1136 (2) | −0.2356 (8) | 0.0278 (11) | |
C3 | 0.3677 (10) | 0.1713 (2) | −0.2638 (8) | 0.0287 (12) | |
C4 | 0.6036 (9) | 0.0761 (2) | −0.3318 (7) | 0.0244 (11) | |
C5 | 0.4226 (11) | 0.2189 (2) | −0.3934 (9) | 0.0349 (13) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn | 0.0369 (7) | 0.0240 (6) | 0.0322 (7) | 0.0031 (5) | 0.0187 (5) | 0.0045 (5) |
O1 | 0.036 (2) | 0.0267 (18) | 0.033 (2) | 0.0073 (16) | 0.0203 (16) | 0.0013 (16) |
O2 | 0.047 (2) | 0.0328 (19) | 0.037 (2) | 0.0016 (17) | 0.0290 (18) | 0.0005 (17) |
O3 | 0.062 (3) | 0.032 (2) | 0.051 (3) | 0.004 (2) | 0.038 (2) | 0.0099 (19) |
O4 | 0.062 (3) | 0.026 (2) | 0.062 (3) | 0.009 (2) | 0.034 (2) | 0.013 (2) |
O5 | 0.035 (2) | 0.042 (2) | 0.039 (2) | 0.0136 (19) | 0.0163 (18) | −0.0050 (19) |
N1 | 0.035 (3) | 0.023 (2) | 0.031 (2) | 0.0059 (19) | 0.018 (2) | 0.0017 (19) |
N2 | 0.030 (2) | 0.023 (2) | 0.026 (2) | 0.0049 (18) | 0.0149 (19) | 0.0061 (18) |
C1 | 0.033 (3) | 0.032 (3) | 0.024 (3) | 0.002 (2) | 0.016 (2) | 0.000 (2) |
C2 | 0.027 (3) | 0.032 (3) | 0.029 (3) | −0.004 (2) | 0.016 (2) | −0.003 (2) |
C3 | 0.034 (3) | 0.025 (3) | 0.032 (3) | 0.000 (2) | 0.017 (2) | −0.003 (2) |
C4 | 0.025 (3) | 0.029 (3) | 0.020 (2) | 0.001 (2) | 0.009 (2) | −0.002 (2) |
C5 | 0.038 (3) | 0.037 (3) | 0.035 (3) | −0.003 (3) | 0.019 (3) | 0.005 (2) |
Mn—O5i | 2.197 (4) | O5—H5A | 0.84 (5) |
Mn—O5 | 2.197 (4) | O5—H5B | 0.86 (4) |
Mn—N2 | 2.201 (4) | N1—C1 | 1.324 (6) |
Mn—N2i | 2.201 (4) | N1—C3 | 1.364 (6) |
Mn—O1i | 2.202 (3) | N1—H1 | 0.8600 |
Mn—O1 | 2.202 (3) | N2—C1 | 1.333 (6) |
O1—C4 | 1.261 (6) | N2—C2 | 1.385 (6) |
O2—C4 | 1.255 (5) | C1—H1A | 0.9300 |
O2—O3 | 2.515 (5) | C2—C3 | 1.366 (7) |
O3—C5 | 1.321 (6) | C2—C4 | 1.489 (6) |
O3—H3 | 0.85 (5) | C3—C5 | 1.475 (7) |
O4—C5 | 1.204 (6) | ||
O5i—Mn—O5 | 180 | C3—N1—O3iv | 126.5 (3) |
O5i—Mn—N2 | 93.91 (14) | C1—N1—O4iv | 83.2 (3) |
O5—Mn—N2 | 86.09 (14) | C3—N1—O4iv | 167.4 (3) |
N2—Mn—N2i | 180 | C1—N1—H1 | 125.6 |
O5—Mn—O1i | 90.80 (13) | C3—N1—H1 | 125.6 |
N2—Mn—O1i | 103.55 (13) | C1—N2—C2 | 104.9 (4) |
O5—Mn—O1 | 89.20 (13) | C1—N2—Mn | 143.4 (3) |
N2—Mn—O1 | 76.45 (13) | C2—N2—Mn | 111.0 (3) |
N2i—Mn—O1 | 103.55 (13) | N1—C1—N2 | 111.3 (4) |
O1i—Mn—O1 | 180 | N1—C1—H1A | 124.3 |
C4—O1—Mn | 116.9 (3) | N2—C1—H1A | 124.3 |
C4—O2—O3 | 110.1 (3) | C3—C2—N2 | 109.5 (4) |
C5—O3—O2 | 109.3 (3) | C3—C2—C4 | 131.5 (4) |
C5—O3—H3 | 118 (5) | N2—C2—C4 | 118.9 (4) |
Mn—O5—O1ii | 108.43 (15) | N1—C3—C2 | 105.5 (4) |
Mn—O5—O2iii | 104.74 (15) | N1—C3—C5 | 120.1 (4) |
O1ii—O5—O2iii | 138.27 (17) | C2—C3—C5 | 134.3 (4) |
Mn—O5—H5A | 114 (4) | O2—C4—O1 | 125.0 (4) |
O1ii—O5—H5A | 128 (4) | O2—C4—C2 | 118.4 (4) |
Mn—O5—H5B | 120 (3) | O1—C4—C2 | 116.6 (4) |
H5A—O5—H5B | 108 (5) | O4—C5—O3 | 121.9 (5) |
C1—N1—C3 | 108.7 (4) | O4—C5—C3 | 121.9 (5) |
C1—N1—O3iv | 124.1 (3) | O3—C5—C3 | 116.1 (5) |
O5i—Mn—O1—C4 | 96.4 (3) | Mn—N2—C2—C3 | −172.9 (3) |
O5—Mn—O1—C4 | −83.6 (3) | C1—N2—C2—C4 | 177.7 (4) |
N2—Mn—O1—C4 | 2.5 (3) | Mn—N2—C2—C4 | 4.9 (5) |
N2i—Mn—O1—C4 | −177.5 (3) | C1—N1—C3—C2 | 0.2 (5) |
C4—O2—O3—C5 | −0.2 (5) | O3iv—N1—C3—C2 | 170.9 (3) |
N2—Mn—O5—O1ii | −143.68 (17) | O4iv—N1—C3—C2 | −160.3 (13) |
N2i—Mn—O5—O1ii | 36.32 (17) | C1—N1—C3—C5 | −176.9 (4) |
O1i—Mn—O5—O1ii | 112.79 (18) | O3iv—N1—C3—C5 | −6.2 (7) |
O1—Mn—O5—O1ii | −67.21 (18) | O4iv—N1—C3—C5 | 22.5 (18) |
N2—Mn—O5—O2iii | 62.02 (17) | N2—C2—C3—N1 | −0.1 (5) |
N2i—Mn—O5—O2iii | −117.98 (17) | C4—C2—C3—N1 | −177.5 (5) |
O1i—Mn—O5—O2iii | −41.51 (16) | N2—C2—C3—C5 | 176.4 (5) |
O1—Mn—O5—O2iii | 138.49 (16) | C4—C2—C3—C5 | −1.0 (10) |
O5i—Mn—N2—C1 | 98.0 (5) | O3—O2—C4—O1 | −174.5 (4) |
O5—Mn—N2—C1 | −82.0 (5) | O3—O2—C4—C2 | 3.3 (5) |
O1i—Mn—N2—C1 | 7.9 (6) | Mn—O1—C4—O2 | 177.1 (4) |
O1—Mn—N2—C1 | −172.1 (6) | Mn—O1—C4—C2 | −0.7 (5) |
O5i—Mn—N2—C2 | −93.7 (3) | C3—C2—C4—O2 | −3.7 (8) |
O5—Mn—N2—C2 | 86.3 (3) | N2—C2—C4—O2 | 179.1 (4) |
O1i—Mn—N2—C2 | 176.2 (3) | C3—C2—C4—O1 | 174.2 (5) |
O1—Mn—N2—C2 | −3.8 (3) | N2—C2—C4—O1 | −3.0 (7) |
C3—N1—C1—N2 | −0.3 (6) | O2—O3—C5—O4 | 175.9 (5) |
O3iv—N1—C1—N2 | −171.2 (3) | O2—O3—C5—C3 | −3.3 (6) |
O4iv—N1—C1—N2 | 175.5 (4) | N1—C3—C5—O4 | 1.7 (8) |
C2—N2—C1—N1 | 0.2 (5) | C2—C3—C5—O4 | −174.5 (6) |
Mn—N2—C1—N1 | 168.9 (4) | N1—C3—C5—O3 | −179.1 (5) |
C1—N2—C2—C3 | 0.0 (5) | C2—C3—C5—O3 | 4.7 (9) |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+2, −y, −z; (iii) x, y, z+1; (iv) x−1/2, −y+1/2, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5B···O1ii | 0.86 (4) | 1.95 (4) | 2.733 (5) | 151 (5) |
O5—H5A···O2iii | 0.84 (5) | 1.94 (5) | 2.770 (5) | 165 (5) |
N1—H1···O3iv | 0.86 | 2.05 | 2.895 (5) | 169 |
N1—H1···O4iv | 0.86 | 2.56 | 3.130 (5) | 124 |
O3—H3···O2 | 0.85 (5) | 1.69 (3) | 2.515 (5) | 163 (8) |
Symmetry codes: (ii) −x+2, −y, −z; (iii) x, y, z+1; (iv) x−1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Mn(C5H3N2O4)2(H2O)2] |
Mr | 401.16 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 5.0550 (3), 22.9305 (7), 6.5918 (4) |
β (°) | 111.596 (2) |
V (Å3) | 710.44 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.00 |
Crystal size (mm) | 0.49 × 0.15 × 0.14 |
Data collection | |
Diffractometer | Siemans SMART CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS, Sheldrick, 1996) |
Tmin, Tmax | 0.836, 0.870 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2152, 1216, 852 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.156, 1.01 |
No. of reflections | 1216 |
No. of parameters | 126 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.74, −1.13 |
Computer programs: SMART (Siemens,1996), SAINT (Siemens,1994), XPREP in SHELXTL (Siemens,1994), SHELXTL.
Mn—O5 | 2.197 (4) | O2—C4 | 1.255 (5) |
Mn—N2 | 2.201 (4) | O3—C5 | 1.321 (6) |
Mn—O1 | 2.202 (3) | O4—C5 | 1.204 (6) |
O1—C4 | 1.261 (6) | ||
O5—Mn—N2 | 86.09 (14) | N2—Mn—O1 | 76.45 (13) |
O5—Mn—O1 | 89.20 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5B···O1i | 0.86 (4) | 1.95 (4) | 2.733 (5) | 151 (5) |
O5—H5A···O2ii | 0.84 (5) | 1.94 (5) | 2.770 (5) | 165 (5) |
N1—H1···O3iii | 0.86 | 2.05 | 2.895 (5) | 169 |
O3—H3···O2 | 0.85 (5) | 1.69 (3) | 2.515 (5) | 163 (8) |
Symmetry codes: (i) −x+2, −y, −z; (ii) x, y, z+1; (iii) x−1/2, −y+1/2, z+1/2. |
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It is well established that manganese is one of the trace elements in biosystems, and it plays an important role in the active sites of various redox-based enzymes (Weighardt, 1989). In addition to the well known oxygen-evolving complex, which is generally believed to contain a tetranuclear manganese cluster catalyzing the oxidation of water to yield O2 during photosynthesis (Debus, 1992), there are three known enzymes containing a mononuclear manganese site, viz. superoxide dismutase, peroxidase and dioxygenase, which participate in the redox changes of biological systems (Law et al., 1999). In order to better understand the exact nature and mechanism of action of these active sites, N,O-containing ligands are often employed to prepare model compounds for them, based on the knowledge that the coordination sphere of the Mn centers in these enzymes are predominated by N,O-donors from available amino acid residues (Pecoraro & Butler, 1986). In the course of our studies of manganese biochemistry, we have investigated manganese complexation by imidazole-4,5-dicarboxylic acid (H3ida), considering that it possesses the biologically important imidazole ring, which is known as a functional group of histidine, and potentially versatile bonding modes with the metal ion. We report here the single-crystal structure of a new compound, (I), in which the H2ida monoanion coordinates to the Mn atom acting as one bidentate ligand. The coordination mode of the ligand exhibited in (I) is unique and has not been reported previously in other manganese–imidazole-4,5-dicarboxylate complexes.
As shown in Fig. 1, (I) is a discrete neutral monomeric molecule, in which the Mn atom resides on a crystallographic inversion centre and the asymmetric unit contains one-half of the formula [Mn(H2ida)2(H2O)2]. The octahedral sphere on the manganese(II) centre is highly distorted because of the N,O-chelation of the rigid H2ida ligand (Table 1), with the cis angles [76.45 (13)–103.55 (13)°] deviating sifgnificantly from the ideal value of 90°.
The Mn atom, atoms O1 and N2, and the inversion-related pair are strictly coplanar as a result of the Mn atom lying on the inversion centre. The two O atoms from the symmetry-related water molecules complete the octahedral coordination The Mn—O distance (Table 1) is comparable with those in the Mn(II)–water complexes (Schlueter & Geiser, 2003; Okabe & Koizumi, 1997; Hao et al., 2000; Ma et al., 2002).
The H2ida ligand adopts a bidentate coordination mode to the Mn atom through one imidazolyl N atom and one O atom from one deprotonated carboxy group; the other carboxy group is protonated, as indicated by the significant difference between the O3—C5 [1.321 (6) Å] and O4—C5 [1.204 (6) Å] bond lengths. This type of binding mode is different from those found in the previously reported Mn complexes [Mn(salen)(H2ida)(H2O)] (Huang et al., 2001) and [Mn2(salpn)2(ida)]+ (Caudle et al., 1997). The N—Mn—O angle is 76.45 (13)°, and the Mn—N and Mn—O (H2ida) bond lengths [2.201 (4) and 2.202 (3) Å, respectively] are comparable to those reported in Mn complexes with the formula [Mn(L)2(H2O)2] (L is N-heteroaromatic acid) similar to the title compound, e.g. L = pyridine-2,5-dicarboxylate (Goher & Mak, 1994), and L = pyridine-2-carboxylate (Okabe & Koizumi, 1998). All non-H atoms in the H2ida ligand are nearly coplanar [the mean deviation is 0.090 (9) Å)], with the maximun of deviation of 0.196 (3) Å for atom O1 being the result of the hydrogen-bonding interaction involving atoms O1 and O5.
As listed in Table 2, N1—H1···O3iii hydrogen bonds link the molecules, thus generating a two-dimensional hydrogen-bonded network sheet (Fig. 2). These sheets are further linked via pairs of hydrogen bonds involving the coordinated water O5 atoms and two carboxy O atoms (O1 and O2) of symmetry-related monomers. Each of the monomers in one sheet further connects four monomers belonging to the two symmetry-related sheets above and below, thus generating centrosymmetric pentamers (Fig. 3), giving rise to an overall three-dimensional hydrogen-bonded network.