Download citation
Download citation
link to html
The identification of the anti­bacterial action of nalidixic acid (nx) was central to the development of the quinolone anti­bacterial compounds. The ability of the nx naphthyridyl ring to inter­act with and inhibit some proteins has encouraged the investigation of similar structures in the search for more active compounds with less adverse effects. The possibility of structural modification by attachment of other biologically active moieties to the naphthyridyl ring of nx allowed the development of new active anti­microbial mol­ecules. Hydrazone derivatives of nx can be synthesized easily based on the condensation of the hydrazide derivative of nx with the desired aldehyde or ketone. Only a few complexes with nx hydrazone derivatives have been described but for none were the crystal structures elucidated. The synthesis of a new one-dimensional CuII coordination polymer, namely catena-poly[[copper(II)-di-μ-chlorido-cop­per(II)-{μ-1-ethyl-N′-[(1H-imidazol-4-yl)methyl­idene]-7-methyl-4-oxo-1,4-di­hydro-1,8-naphthyridine-3-carbohydrazidato}-[di­methano­lcopper(II)]-{μ-1-ethyl-N′-[(1H-imidazol-3-yl)methyl­idene]-7-methyl-4-oxo-1,4-di­hydro-1,8-naphthyridine-3-carbohydrazidato}] dichloride methanol tetra­solvate], {[Cu3(C16H15N6O2)2Cl2(CH3OH)2]Cl2·4CH3OH}n, with the (1H-imidazol-4-yl)methyl­idene carbohydrazide derivative of nalidixic acid (denoted h4imi), is presented and its structure is compared to the density functional theory (DFT) optimized structure of free h4imi. The title structure presents an octa­hedral CuII ion on an inversion centre alternating along a polymer chain with a square-pyramidal CuII ion, with the two CuII centres bridged by two chloride ligands. Hydrogen bonds involving chloride counter-ions and methanol solvent mol­ecules mediate the three-dimensional packing of the polymer. Comparison of the geometrical results from the structure analysis with those derived from a DFT study of the free ligand reveal the differences that arise upon coordination.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229616008913/fa3386sup1.cif
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229616008913/fa3386Isup2.hkl
Contains datablock I

docx

Microsoft Word (DOCX) file https://doi.org/10.1107/S2053229616008913/fa3386sup4.docx
Support information - Manuscript Bergamini et al.

pdf

Portable Document Format (PDF) file https://doi.org/10.1107/S2053229616008913/fa3386sup4.pdf
Supplementary material

CCDC reference: 1483258

Computing details top

Data collection: APEX2 (Bruker, 2013); cell refinement: SAINT (Bruker, 2013); data reduction: SAINT (Bruker, 2013); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).

catena-Poly[[copper(II)-di-µ-chlorido-copper(II)-{µ-1-ethyl-N'-[(1H-imidazol-3-yl)methylidene]-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carbohydrazidato}-[dimethanolcopper(II)]-{µ-1-ethyl-N'-[(1H-imidazol-3-yl)methylidene]-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carbohydrazidato}] dichloride methanol tetrasolvate] top
Crystal data top
[Cu3(C16H15N6O2)2Cl2(CH4O)2]Cl2·4CH4OF(000) = 2260
Mr = 1107.26Dx = 1.671 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 18.5958 (11) ÅCell parameters from 9900 reflections
b = 16.6608 (10) Åθ = 2.8–28.2°
c = 14.2394 (9) ŵ = 1.74 mm1
β = 93.692 (2)°T = 150 K
V = 4402.5 (5) Å3Block, green
Z = 40.26 × 0.17 × 0.13 mm
Data collection top
Bruker APEXII CCD
diffractometer
4751 reflections with I > 2σ(I)
φ and ω scansRint = 0.029
Absorption correction: multi-scan
(SADABS; Bruker, 2014)
θmax = 28.3°, θmin = 1.6°
Tmin = 0.691, Tmax = 0.746h = 2423
34794 measured reflectionsk = 2221
5471 independent reflectionsl = 1818
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.074 w = 1/[σ2(Fo2) + (0.0356P)2 + 7.5985P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
5471 reflectionsΔρmax = 0.54 e Å3
294 parametersΔρmin = 0.51 e Å3
25 restraints
Special details top

Experimental. SADABS-2014/5 (Bruker,2014) was used for absorption correction. wR2(int) was 0.0498 before and 0.0405 after correction. The Ratio of minimum to maximum transmission is 0.9269. The λ/2 correction factor is 0.00150.

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Cu10.47615 (2)0.68901 (2)0.36649 (2)0.01472 (6)
Cl10.64032 (3)0.05663 (3)0.32933 (5)0.04294 (16)
Cu20.25000.75000.50000.01651 (8)
Cl20.41153 (2)0.67586 (3)0.19402 (3)0.01953 (10)
O20.28293 (7)0.64150 (7)0.49541 (9)0.0181 (3)
C180.22719 (13)0.73844 (17)0.26149 (16)0.0379 (6)
H18A0.19560.73280.20400.057*
H18B0.26320.69540.26420.057*
H18C0.25160.79050.26120.057*
C50.34270 (9)0.63378 (10)0.45766 (12)0.0142 (3)
C100.32155 (10)0.49200 (11)0.47609 (13)0.0191 (4)
H100.27810.50890.50160.023*
N60.40462 (9)0.30580 (9)0.42752 (11)0.0200 (3)
C70.43359 (9)0.52754 (11)0.41004 (12)0.0143 (3)
O10.48136 (7)0.57491 (8)0.38402 (9)0.0199 (3)
N20.48830 (8)0.80569 (9)0.37265 (11)0.0169 (3)
C20.54366 (10)0.85055 (12)0.35118 (13)0.0210 (4)
H20.58790.82990.33170.025*
N10.52919 (9)0.92866 (10)0.36055 (13)0.0254 (4)
H10.55870.96850.35000.030*
C10.46128 (11)0.93587 (12)0.38905 (15)0.0239 (4)
H1A0.43640.98430.40100.029*
C30.43578 (10)0.85916 (11)0.39719 (13)0.0184 (4)
C40.36732 (10)0.83710 (11)0.42980 (13)0.0185 (4)
H40.33570.88030.44120.022*
N30.34300 (8)0.76657 (9)0.44565 (11)0.0158 (3)
C60.36748 (9)0.55065 (10)0.44654 (12)0.0145 (3)
N50.33399 (8)0.41321 (9)0.47135 (12)0.0206 (3)
C90.39648 (10)0.38588 (11)0.43381 (12)0.0170 (3)
C130.46479 (11)0.27836 (12)0.39315 (13)0.0214 (4)
C120.51965 (11)0.32959 (12)0.36530 (13)0.0218 (4)
H120.56290.30800.34370.026*
C110.51000 (10)0.41102 (12)0.36973 (12)0.0187 (4)
H110.54600.44640.34970.022*
C80.44637 (9)0.44187 (11)0.40417 (12)0.0155 (3)
C140.47078 (13)0.18882 (12)0.38232 (15)0.0287 (5)
H14A0.45220.16230.43720.043*
H14B0.52140.17410.37750.043*
H14C0.44260.17180.32530.043*
N40.38150 (8)0.69624 (9)0.42930 (10)0.0137 (3)
O30.18547 (8)0.73350 (9)0.34110 (11)0.0269 (3)
H30.16990.68650.34620.040*
O40.72490 (11)0.01627 (17)0.16711 (16)0.0682 (7)
H4A0.69590.00770.20890.102*
C170.79330 (15)0.03305 (19)0.20971 (18)0.0463 (6)
H17A0.78830.05410.27320.069*
H17B0.82210.01630.21350.069*
H17C0.81740.07300.17220.069*
C15A0.2775 (4)0.3515 (7)0.4911 (7)0.0275 (5)0.326 (4)
H15A0.27000.31630.43530.033*0.326 (4)
H15B0.29620.31760.54430.033*0.326 (4)
C16A0.2070 (3)0.3846 (4)0.5139 (5)0.0275 (5)0.326 (4)
H16A0.18710.41700.46100.041*0.326 (4)
H16B0.21330.41830.57030.041*0.326 (4)
H16C0.17390.34050.52570.041*0.326 (4)
C15B0.2817 (2)0.3587 (3)0.5150 (3)0.0275 (5)0.674 (4)
H15C0.27270.37780.57900.033*0.674 (4)
H15D0.30190.30380.52030.033*0.674 (4)
C16B0.21244 (16)0.35759 (19)0.4550 (2)0.0275 (5)0.674 (4)
H16D0.22120.33620.39270.041*0.674 (4)
H16E0.19350.41230.44860.041*0.674 (4)
H16F0.17740.32350.48460.041*0.674 (4)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu10.01062 (11)0.01627 (11)0.01774 (11)0.00031 (8)0.00466 (7)0.00048 (8)
Cl10.0347 (3)0.0247 (3)0.0716 (4)0.0144 (2)0.0205 (3)0.0068 (3)
Cu20.01243 (15)0.01206 (15)0.02623 (16)0.00088 (11)0.01043 (12)0.00055 (11)
Cl20.01096 (19)0.0261 (2)0.0220 (2)0.00067 (16)0.00461 (15)0.00184 (17)
O20.0140 (6)0.0136 (6)0.0279 (7)0.0008 (5)0.0116 (5)0.0008 (5)
C180.0325 (12)0.0531 (16)0.0286 (11)0.0070 (11)0.0046 (9)0.0044 (10)
C50.0114 (8)0.0159 (8)0.0156 (7)0.0004 (6)0.0021 (6)0.0007 (6)
C100.0147 (8)0.0155 (8)0.0277 (9)0.0023 (7)0.0065 (7)0.0005 (7)
N60.0205 (8)0.0155 (8)0.0238 (8)0.0039 (6)0.0001 (6)0.0011 (6)
C70.0118 (8)0.0170 (8)0.0140 (7)0.0021 (6)0.0010 (6)0.0011 (6)
O10.0144 (6)0.0190 (6)0.0272 (7)0.0018 (5)0.0087 (5)0.0044 (5)
N20.0124 (7)0.0199 (8)0.0188 (7)0.0031 (6)0.0035 (5)0.0015 (6)
C20.0152 (8)0.0246 (10)0.0234 (9)0.0053 (7)0.0037 (7)0.0028 (7)
N10.0199 (8)0.0218 (8)0.0351 (9)0.0096 (7)0.0068 (7)0.0010 (7)
C10.0194 (9)0.0189 (9)0.0343 (11)0.0051 (8)0.0080 (8)0.0013 (8)
C30.0160 (8)0.0177 (9)0.0219 (9)0.0021 (7)0.0041 (7)0.0002 (7)
C40.0162 (9)0.0149 (8)0.0249 (9)0.0018 (7)0.0060 (7)0.0000 (7)
N30.0137 (7)0.0142 (7)0.0203 (7)0.0001 (6)0.0061 (5)0.0005 (6)
C60.0126 (8)0.0140 (8)0.0172 (8)0.0004 (6)0.0036 (6)0.0005 (6)
N50.0145 (7)0.0139 (7)0.0340 (9)0.0008 (6)0.0066 (6)0.0034 (6)
C90.0149 (8)0.0159 (8)0.0198 (8)0.0032 (7)0.0005 (6)0.0001 (7)
C130.0249 (10)0.0197 (9)0.0190 (8)0.0087 (8)0.0022 (7)0.0014 (7)
C120.0201 (9)0.0259 (10)0.0196 (8)0.0095 (8)0.0016 (7)0.0024 (7)
C110.0158 (9)0.0235 (9)0.0168 (8)0.0045 (7)0.0019 (6)0.0006 (7)
C80.0136 (8)0.0187 (9)0.0141 (8)0.0042 (7)0.0004 (6)0.0005 (6)
C140.0352 (12)0.0199 (10)0.0311 (11)0.0097 (9)0.0029 (9)0.0032 (8)
N40.0123 (7)0.0134 (7)0.0159 (7)0.0014 (5)0.0041 (5)0.0005 (5)
O30.0258 (7)0.0222 (7)0.0336 (8)0.0020 (6)0.0088 (6)0.0022 (6)
O40.0375 (11)0.108 (2)0.0586 (13)0.0008 (12)0.0000 (9)0.0433 (13)
C170.0439 (15)0.0617 (18)0.0333 (13)0.0011 (13)0.0017 (11)0.0019 (12)
C15A0.0185 (8)0.0213 (11)0.0430 (16)0.0039 (7)0.0045 (10)0.0080 (11)
C16A0.0185 (8)0.0213 (11)0.0430 (16)0.0039 (7)0.0045 (10)0.0080 (11)
C15B0.0185 (8)0.0213 (11)0.0430 (16)0.0039 (7)0.0045 (10)0.0080 (11)
C16B0.0185 (8)0.0213 (11)0.0430 (16)0.0039 (7)0.0045 (10)0.0080 (11)
Geometric parameters (Å, º) top
Cu1—Cl2i2.3206 (5)C4—N31.284 (2)
Cu1—Cl22.6727 (5)N3—N41.400 (2)
Cu1—O11.9190 (13)N5—C91.387 (2)
Cu1—N42.0285 (14)N5—C15A1.509 (11)
Cu2—O21.9110 (12)N5—C15B1.495 (5)
Cu2—O2ii1.9110 (12)C9—C81.400 (3)
Cu2—N3ii1.9593 (15)C13—C121.407 (3)
Cl2—Cu1i2.3206 (5)C13—C141.505 (3)
O2—C51.272 (2)C12—H120.9500
C18—H18A0.9800C12—C111.371 (3)
C18—H18B0.9800C11—H110.9500
C18—H18C0.9800C11—C81.407 (2)
C18—O31.417 (3)C14—H14A0.9800
C5—C61.472 (2)C14—H14B0.9800
C5—N41.343 (2)C14—H14C0.9800
C10—H100.9500O3—H30.8400
C10—C61.381 (2)O4—H4A0.8400
C10—N51.335 (2)O4—C171.402 (3)
N6—C91.346 (2)C17—H17A0.9800
N6—C131.331 (2)C17—H17B0.9800
C7—O11.262 (2)C17—H17C0.9800
C7—C61.418 (2)C15A—H15A0.9900
C7—C81.450 (2)C15A—H15B0.9900
N2—C21.324 (2)C15A—C16A1.478 (8)
N2—C31.383 (2)C16A—H16A0.9800
C2—H20.9500C16A—H16B0.9800
C2—N11.337 (3)C16A—H16C0.9800
N1—H10.8800C15B—H15C0.9900
N1—C11.356 (3)C15B—H15D0.9900
C1—H1A0.9500C15B—C16B1.499 (4)
C1—C31.371 (3)C16B—H16D0.9800
C3—C41.431 (2)C16B—H16E0.9800
C4—H40.9500C16B—H16F0.9800
Cl2i—Cu1—Cl290.757 (16)N5—C9—C8119.05 (16)
O1—Cu1—Cl2i85.16 (4)N6—C13—C12122.51 (18)
O1—Cu1—Cl293.11 (4)N6—C13—C14116.60 (19)
O1—Cu1—N492.27 (6)C12—C13—C14120.87 (18)
N4—Cu1—Cl293.35 (4)C13—C12—H12120.4
N4—Cu1—Cl2i175.27 (4)C11—C12—C13119.22 (17)
O2ii—Cu2—O2180.0C11—C12—H12120.4
O2—Cu2—N3ii99.97 (6)C12—C11—H11120.2
O2ii—Cu2—N3ii80.03 (6)C12—C11—C8119.56 (18)
Cu1i—Cl2—Cu188.356 (16)C8—C11—H11120.2
C5—O2—Cu2113.63 (11)C9—C8—C7121.61 (16)
H18A—C18—H18B109.5C9—C8—C11116.76 (17)
H18A—C18—H18C109.5C11—C8—C7121.62 (17)
H18B—C18—H18C109.5C13—C14—H14A109.5
O3—C18—H18A109.5C13—C14—H14B109.5
O3—C18—H18B109.5C13—C14—H14C109.5
O3—C18—H18C109.5H14A—C14—H14B109.5
O2—C5—C6115.40 (15)H14A—C14—H14C109.5
O2—C5—N4123.35 (16)H14B—C14—H14C109.5
N4—C5—C6121.25 (15)C5—N4—Cu1125.78 (12)
C6—C10—H10117.7C5—N4—N3107.93 (14)
N5—C10—H10117.7N3—N4—Cu1126.19 (11)
N5—C10—C6124.58 (17)C18—O3—H3109.5
C13—N6—C9117.76 (17)C17—O4—H4A109.5
O1—C7—C6125.53 (16)O4—C17—H17A109.5
O1—C7—C8118.53 (15)O4—C17—H17B109.5
C6—C7—C8115.93 (15)O4—C17—H17C109.5
C7—O1—Cu1128.84 (12)H17A—C17—H17B109.5
C2—N2—C3105.49 (16)H17A—C17—H17C109.5
N2—C2—H2124.4H17B—C17—H17C109.5
N2—C2—N1111.22 (17)N5—C15A—H15A108.5
N1—C2—H2124.4N5—C15A—H15B108.5
C2—N1—H1125.9H15A—C15A—H15B107.5
C2—N1—C1108.25 (16)C16A—C15A—N5115.1 (8)
C1—N1—H1125.9C16A—C15A—H15A108.5
N1—C1—H1A127.0C16A—C15A—H15B108.5
N1—C1—C3106.06 (17)C15A—C16A—H16A109.5
C3—C1—H1A127.0C15A—C16A—H16B109.5
N2—C3—C4125.04 (16)C15A—C16A—H16C109.5
C1—C3—N2108.98 (16)H16A—C16A—H16B109.5
C1—C3—C4125.93 (18)H16A—C16A—H16C109.5
C3—C4—H4115.7H16B—C16A—H16C109.5
N3—C4—C3128.51 (17)N5—C15B—H15C109.8
N3—C4—H4115.7N5—C15B—H15D109.8
C4—N3—N4123.15 (15)N5—C15B—C16B109.2 (3)
C10—C6—C5115.40 (15)H15C—C15B—H15D108.3
C10—C6—C7119.16 (16)C16B—C15B—H15C109.8
C7—C6—C5125.43 (16)C16B—C15B—H15D109.8
C10—N5—C9119.62 (16)C15B—C16B—H16D109.5
C10—N5—C15A122.4 (4)C15B—C16B—H16E109.5
C10—N5—C15B117.2 (2)C15B—C16B—H16F109.5
C9—N5—C15A117.3 (4)H16D—C16B—H16E109.5
C9—N5—C15B123.0 (2)H16D—C16B—H16F109.5
N6—C9—N5116.84 (16)H16E—C16B—H16F109.5
N6—C9—C8124.10 (17)
Cu2—O2—C5—C6175.80 (11)C6—C5—N4—N3177.71 (15)
Cu2—O2—C5—N44.2 (2)C6—C10—N5—C90.6 (3)
O2—C5—C6—C101.8 (2)C6—C10—N5—C15A170.8 (4)
O2—C5—C6—C7177.27 (16)C6—C10—N5—C15B174.3 (2)
O2—C5—N4—Cu1178.81 (12)C6—C7—O1—Cu110.4 (3)
O2—C5—N4—N32.3 (2)C6—C7—C8—C90.6 (2)
C10—N5—C9—N6177.46 (17)C6—C7—C8—C11179.65 (16)
C10—N5—C9—C81.9 (3)N5—C10—C6—C5179.52 (18)
C10—N5—C15A—C16A1.3 (9)N5—C10—C6—C71.4 (3)
C10—N5—C15B—C16B72.4 (4)N5—C9—C8—C71.3 (3)
N6—C9—C8—C7178.04 (17)N5—C9—C8—C11177.82 (16)
N6—C9—C8—C112.9 (3)C9—N6—C13—C121.1 (3)
N6—C13—C12—C112.8 (3)C9—N6—C13—C14176.99 (17)
O1—C7—C6—C51.8 (3)C9—N5—C15A—C16A169.1 (5)
O1—C7—C6—C10177.20 (17)C9—N5—C15B—C16B112.9 (3)
O1—C7—C8—C9178.52 (16)C13—N6—C9—N5178.89 (16)
O1—C7—C8—C110.5 (3)C13—N6—C9—C81.8 (3)
N2—C2—N1—C10.3 (2)C13—C12—C11—C81.6 (3)
N2—C3—C4—N32.8 (3)C12—C11—C8—C7179.86 (17)
C2—N2—C3—C10.4 (2)C12—C11—C8—C91.1 (3)
C2—N2—C3—C4177.00 (18)C8—C7—O1—Cu1170.57 (12)
C2—N1—C1—C30.5 (2)C8—C7—C6—C5179.10 (16)
N1—C1—C3—N20.5 (2)C8—C7—C6—C101.9 (2)
N1—C1—C3—C4176.82 (18)C14—C13—C12—C11175.23 (18)
C1—C3—C4—N3174.1 (2)N4—C5—C6—C10178.20 (16)
C3—N2—C2—N10.1 (2)N4—C5—C6—C72.7 (3)
C3—C4—N3—N42.3 (3)C15A—N5—C9—N66.8 (5)
C4—N3—N4—Cu16.7 (2)C15A—N5—C9—C8172.5 (4)
C4—N3—N4—C5176.81 (17)C15B—N5—C9—N67.9 (3)
C6—C5—N4—Cu11.2 (2)C15B—N5—C9—C8172.7 (2)
Symmetry codes: (i) x+1, y, z+1/2; (ii) x+1/2, y+3/2, z+1.
Hydrogen-bond geometry (Å) top
D—H···AD···A
O3—H3···Cl1iii3.066 (2)
N1—H1···Cl1iv3.022 (2)
O4—H4A···Cl13.123 (2)
Symmetry codes: (iii) x1/2, y+1/2, z; (iv) x, y+1, z.
Selected bonds lengths (Å) from the {[Cu1.5(h4imi)Cl(MeOH)]Cl.2MeOH}n complex and similar nx complexes found in the CSD top
BondBond lengthMean CSD value
Cu1—N42.029 (2)2.00 (3)/1.98 (5)
Cu1—N21.958 (2)
Cu1—O11.919 (1)1.94 (4)
Cu1—Cl22.6727 (5)2.7 (2)/2.4 (2)
Cu1—Cl2i2.3205 (5)
Cu2—N31.959 (15)1.99 (3)
Cu2—O21.911 (12)1.96 (3)
Cu2—O32.5070 (16)2.47 (7)
Symmetry codes: (i) -x+1, y, -z+1/2; (ii) ??? [please provide].
 

Follow Acta Cryst. C
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds