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The solvent-free title compound, C16H6N6, is an aromatic derivative of phenanthroline with an extended π system. It exhibits a remarkable π–π columnar stacking in the crystal structure, with inter­planar distances of 3.229 (3) and 3.380 (3) Å, the shorter spacing being between the two mol­ecules within the asymmetric unit. Adjacent units along the stacked arrays are rotated in-plane with respect to one another by approximately 120°. The hydro­chloride derivative, C16H7N6+·Cl·2H2O, in which one of the phenanthroline N atoms has been protonated, crystallized as a dihydrate. The supra­molecular organization in this compound is characterized by continuous hydrogen bonding between the component species, yielding two-dimensional hydrogen-bonded networks. This study demonstrates the high significance of the π–π stacking inter­actions in the solvent-free aromatic system and how they can be undermined by introducing hydrogen-bonding capacity into the ligand.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270108025377/fa3158sup1.cif
Contains datablocks I, II, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270108025377/fa3158Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270108025377/fa3158IIsup3.hkl
Contains datablock II

CCDC references: 703731; 703732

Comment top

The dipyrido[f,h]quinoxaline-6,7-dicarbonitrile ligand (DICNQ) is an attractive building block for the formation of complexes with diverse metal ions. It has several pyridyl and cyano coordination sites for potential coordination of the latter. Moreover, it has an extended π-electron system which may engage in effective ππ stacking interactions to direct the supramolecular organization of the molecular entities. The synthesis and chemical reactivity of various transition metal complexes with DICNQ have been reported (Kozlov & Goldberg, 2008; Stephenson & Hardie, 2006; Xu et al., 2002; Liu et al., 2001; Kulkarni et al., 2004)). Attempts to employ DICNQ in the fabrication of sensing devices have also been described (Arounaguiri & Maiya, 1999; Ambroise & Maiya, 2000; van der Tol et al., 1998). However, the structure of this important ligand has not been characterized before in its uncomplexed form; such a structure determination could provide information about the dominant ππ stacking interactions that characterize the preferred self-organization features inherent to this compound. Only recently were we able to describe the remarkable ππ stacking that dominates the crystal structure of the ethanol solvate of DICNQ (Kozlov, Rubin-Preminger & Goldberg, 2008). During our attempts to synthesize new metal–organic frameworks (rather than discrete complexes) of this ligand, we have now obtained (as a by-product) for the first time X-ray quality crystals of the solvent-free ligand (I). In an additional experiment, the hydrochloride derivative of DICNQ crystallized as a dihydrate, (II). Correspondingly, we report in this paper on the structures of (I) and (II), with an emphasis on the supramolecular self-organization observed in the crystals of the two compounds. In most of the previously published structures, the coordination preference of foreign metal ions dominates the topology of the metal complexes and, in part, the intermolecular organization.

ORTEPIII (Burnett & Johnson, 1996) representations of (I) and (II) are shown in Fig. 1. The asymmetric unit in (I) consists of two crystallographically independent molecules (N1—N22 and N23—N44). The two phenahthroline fragments therein, N1/C2–C11/N12/C13/C14 and N23/C24–C33/N34/C35/C36, are essentially planar. These two planes are nearly parallel to one another, with a dihedral angle between them of 2.48 (6)°. A significant bending of the cyano groups from the respective planes of the phenathroline residues has been observed, with atom N21 deviating 0.345 (6) Å from the N1–C14 plane and atom N44 deviating 0.374 (6) Å from the N23–C36 plane.

As already observed in the crystal structure of the ethanol solvate of DICNQ (Kozlov, Rubin-Preminger & Goldberg, 2008), the intermolecular assembly of these ligand species is dominated by ππ stacking of overlapping phenathroline fragments of adjacent molecules (Fig. 2). Thus, the crystal structure of (I) can be best described as composed of columns of tightly stacked DICNQ ligands. The interplanar distance between the phenanthroline rings in the two molecules of the asymmetric unit is 3.229 (3) Å. This is a remarkably short distance between uncharged overlapping aromatic fragments, which may explain the outward deviations of the cyano groups from the respective phenanthroline plane in order to minimize repulsion between the electron-rich N sites of the overlapping entities. The corresponding interplanar distance between such neighboring pairs displaced along the b axis of the crystal is 3.380 (3) Å [e.g. between the N1–C14 plane and the N23–C36 plane at (x, y - 1, z)], also indicative of significant ππ interactions. These observations are consistent with earlier findings in the structure of the ethanol solvate of DICNQ (Kozlov, Rubin-Preminger & Goldberg, 2008). However, in the former case the overlapping ligands are related by inversion to one another with an aniparallel alignment of the –CN dipoles, the attractive electrostatic interaction between them adding a stabilizing contribution of the columnar organization. In the present case, the ππ stacking arrangement of the DICNQ species is preserved, even though the individual units are oriented differently. For example, the angle between the C13—C14 and C35—C36 central bonds of the phananthroline rings is 60.5 (3)°, and the –CN dipoles of neighboring species thus form an angle of about 120° between them rather than the 180° observed in the earlier study. The resulting columnar organization of the DICNQ species in (I) is illustrated in Fig. 3. The centrosymmetric space symmetry of the entire crystal structure dictates an antiparallel arrangement of adjacent columns related by inversion. Therefore, intermolecular dipolar interactions add to the intercolumnar dispersion forces in stabilizing the overall structure. Molecular modeling calculations are currently being carried out in order to characterize the relative stabilization enthalpies of the different intermolecular organizations in (I) and in the ethanol solvate of DICNQ (Kozlov, Rubin-Preminger & Goldberg, 2008).

Protonation of the DICNQ ligand in (II) occurs on one of the phenanthroline N-atom sites (N12), without affecting to a considerable extent the planarity of the molecular framework. A more subtle inspection of the molecular conformation reveals that the protonated ring C8–C11/N12/C14 is bent slightly with respect to the other pyridyl ring, N1/C2–C5/C13, and the remaining aromatic residue, N1/C2–C8/C13/C14/N15/N16/C17/C18. The corresponding dihedral angles between the mean planes of these fragments are 5.86 (9) and 4.35 (8)°, respectively. The intermolecular organization in (II) is dominated by hydrogen-bonding interactions (Table 1), and it is characterized by minimal overlap between neighboring DICNQ species. The hydrogen bonds propagate from the protonated DICNQ unit (N12/H12) to an adjacent water molecule, from there to two neighboring chloride ions, and then again to a water molecule, forming a continuous hydrogen-bonded layer of the different species (Fig. 4). A view of the crystal structure (Fig. 5) shows that these layers are parallel to the bc plane of the crystal and centered around x = 0. The layers are stacked along the a axis with a lipophilic interface between them around x =1 /2.

The above-described observations indicate that the N-atom sites of the phenathroline fragment of DICNQ are reactive not only to coordination of metal ions but also to protonation, as well as hydrogen-bonding interactions. In its ethanol solvate (Kozlov, Rubin-Preminger & Goldberg, 2008), the ethanol was found to hydrogen bond to one of the N atoms. However, owing to the small size of the solvent molecule this had little disrupting effect on the ππ stacking organization of the neutral DICNQ ligand. The high significance of the stacking interactions to the supramolecular organization of DICNQ has been confirmed by ellucidation of the solvent-free compound (I), which is consistent with similar stacking patterns observed in a large number of phenathroline-derived aromatic compounds (e.g. Gupta et al. 2004; Gut et al., 2002; Bergman et al., 2002). On the other hand, this study shows also that the ππ stacking can be disrupted when an extended hydrogen-bonding scheme is introduced into the system by converting the neutral DICNQ to its hydrochloride derivative, as in (II). It appears that the cooperative charge-assisted hydrogen bonding has in this case a more significant enthalpic contribution than the tight ππ stacking interactions, providing in (II) a dominant structure-directing force.

Related literature top

For related literature, see: Ambroise & Maiya (2000); Arounaguiri & Maiya (1999); Bergman et al. (2002); Gupta et al. (2004); Gut et al. (2002); Kozlov & Goldberg (2008a, 2008b); Kulkarni et al. (2004); Liu et al. (2001); Stephenson & Hardie (2006); Tol et al. (1998); Xu et al. (2002).

Experimental top

The two title compounds were obtained as by-products of our studies of the coordination chemistry of DICNQ with various metal ions. DICNQ was synthesized by previously reported procedures (Arounaguiri & Maiya, 1999; van der Tol et al., 1998), from commercialy available reagents (Aldrich). We attempted the formation of its palladium complex, by reacting DICNQ (8 mg) with dichlorobis(triphenylphosphine)palladium(II) (12 mg) disolved in acetonitrile (4 ml) and dichloromethane (15 ml). After 3 h of reflux, filtration of the resulting solution followed by one week of slow evaporation, solvent-free crystals of DICNQ were obtained as thin yellow plates. Reaction of DICNQ (8 mg) with lanthanum(III) chloride (14 mg) dissolved in methanol (2 ml) and carbon tetrachloride (15 ml) yielded, after 1 h of reflux, filtration of the resulting solution followed by three months of slow evaporation, crystalline brown pyramids suitable for X-ray diffraction analysis.

Refinement top

In (II), H atoms bound to C atoms were located in calculated positions and were constrained to ride on their parent atoms, with C—H distances of 0.95 Å and with Uiso(H) values of 1.2Ueq(C). All other H atoms were located from difference Fourier maps [C—H = 0.87–1.03 Å in (I); see Table 1 for other distances], but their atomic positions were not refined. For them also, Uiso(H) was set at 1.2Ueq(C,N,O). Crystals of (I) exhibited high mosaicity and relatively poor diffraction. The diffraction experiment at 110 K was affected also to some extent by the accummulation of ice of the diffracting sample. Correspondingly, the resulting structural model is characterized by relatively high R factors. No better crystals could be found to improve the experimental data, yet all the H atoms could be clearly located in the difference Fourier map, and the molecular structure seems to be rather precise.

Computing details top

For both compounds, data collection: COLLECT (Nonius, 1999); cell refinement: DENZO (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structures of (a) (I) and (b) (II), showing the atom-labeling scheme. The atom ellipsoids represent displacement parameters at the 50% probability level at ca 110 (2) K. H atoms have been omitted.
[Figure 2] Fig. 2. An illustration of the overlapping mode between the two DICNQ units in the asymmetric unit.
[Figure 3] Fig. 3. The crystal packing of (I), illustrating the columnar organization of the DICNQ molecules, as well as their side packing in the crystal structure. H atoms have been omitted.
[Figure 4] Fig. 4. A perpective view of the continuous hydroden-bonding scheme in (II). The hydrogen bonds are denoted by dashed lines. H atoms have been omitted. The chloride ions and the water molecules are indicated by small spheres, the former being crossed. See Table 1 for geometric details.
[Figure 5] Fig. 5. The crystal packing in (II). The polar, charged and hydrophilic entities, inter-connected into hydrogen-bonded layers, are centered at x = 0 and x = 1. A lipophilic surface centered around x = 1/2 characterizes the interface between neighboring layers. H atoms have been omitted. The chloride ions and the water molecules are indicated by small spheres, the former being crossed.
(I) dipyrido[f,h]quinoxaline-6,7-dicarbonitrile top
Crystal data top
C16H6N6F(000) = 1152
Mr = 282.27Dx = 1.509 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 15.0150 (14) ÅCell parameters from 4063 reflections
b = 6.9620 (6) Åθ = 1.4–25.0°
c = 24.5189 (16) ŵ = 0.10 mm1
β = 104.224 (5)°T = 110 K
V = 2484.5 (4) Å3Plate, yellow
Z = 80.35 × 0.30 × 0.15 mm
Data collection top
Nonius KappaCCD
diffractometer
2660 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.084
Graphite monochromatorθmax = 25.1°, θmin = 2.5°
Detector resolution: 12.8 pixels mm-1h = 017
0.5° ϕ and ω scansk = 08
13248 measured reflectionsl = 2828
4340 independent reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0555P)2 + 2.1196P]
where P = (Fo2 + 2Fc2)/3
4340 reflections(Δ/σ)max < 0.001
397 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = 0.26 e Å3
Crystal data top
C16H6N6V = 2484.5 (4) Å3
Mr = 282.27Z = 8
Monoclinic, P21/cMo Kα radiation
a = 15.0150 (14) ŵ = 0.10 mm1
b = 6.9620 (6) ÅT = 110 K
c = 24.5189 (16) Å0.35 × 0.30 × 0.15 mm
β = 104.224 (5)°
Data collection top
Nonius KappaCCD
diffractometer
2660 reflections with I > 2σ(I)
13248 measured reflectionsRint = 0.084
4340 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0810 restraints
wR(F2) = 0.169H-atom parameters constrained
S = 1.08Δρmax = 0.23 e Å3
4340 reflectionsΔρmin = 0.26 e Å3
397 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

The analysed crystals were characterized by high mosaic spread, and diffracted poorly.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.0704 (2)0.3133 (4)0.90121 (12)0.0281 (8)
C20.0058 (3)0.3659 (6)0.86480 (16)0.0327 (10)
H20.05490.36160.87780.039*
C30.0131 (3)0.4103 (6)0.80852 (15)0.0304 (9)
H30.06920.44450.78420.036*
C40.0640 (3)0.4067 (5)0.78856 (14)0.0274 (9)
H40.06460.43980.75000.033*
C50.1471 (2)0.3549 (5)0.82584 (14)0.0234 (8)
C60.2329 (3)0.3534 (5)0.80877 (14)0.0232 (8)
C70.3145 (3)0.2934 (5)0.84672 (14)0.0235 (8)
C80.3135 (3)0.2385 (5)0.90403 (14)0.0242 (8)
C90.3937 (2)0.1856 (5)0.94300 (15)0.0261 (9)
H90.45060.18320.93390.031*
C100.3895 (3)0.1321 (5)0.99600 (14)0.0284 (9)
H100.44020.10051.02720.034*
C110.3050 (3)0.1349 (5)1.00939 (14)0.0278 (9)
H110.29670.08971.04770.033*
N120.2269 (2)0.1906 (4)0.97371 (12)0.0264 (7)
C130.1466 (2)0.3066 (5)0.88159 (14)0.0228 (8)
C140.2316 (3)0.2440 (5)0.92132 (14)0.0231 (8)
N150.2336 (2)0.4147 (4)0.75640 (11)0.0251 (7)
N160.3943 (2)0.2860 (4)0.83197 (11)0.0254 (7)
C170.3143 (2)0.4131 (5)0.74325 (14)0.0244 (9)
C180.3939 (3)0.3461 (5)0.78013 (14)0.0261 (9)
C190.3155 (2)0.4829 (6)0.68767 (16)0.0288 (9)
C200.4795 (3)0.3412 (6)0.76417 (15)0.0304 (9)
N210.3166 (2)0.5375 (5)0.64347 (13)0.0364 (9)
N220.5485 (2)0.3376 (5)0.75168 (13)0.0389 (9)
N230.0074 (2)0.8831 (5)0.86044 (12)0.0283 (8)
C240.0694 (3)0.8925 (6)0.87792 (15)0.0303 (9)
H240.12100.93650.84970.036*
C250.0774 (3)0.8423 (5)0.93150 (15)0.0294 (9)
H250.14010.84950.94080.035*
C260.0014 (3)0.7767 (5)0.96994 (14)0.0264 (9)
H260.00130.74171.00670.032*
C270.0816 (2)0.7650 (5)0.95366 (14)0.0232 (8)
C280.1649 (2)0.6970 (5)0.99143 (13)0.0212 (8)
C290.2466 (2)0.6860 (5)0.97329 (14)0.0218 (8)
C300.2489 (2)0.7451 (5)0.91662 (13)0.0207 (8)
C310.3292 (3)0.7380 (5)0.89772 (14)0.0262 (9)
H310.38330.68870.92240.031*
C320.3272 (3)0.7940 (5)0.84388 (15)0.0273 (9)
H320.38080.79980.82610.033*
C330.2436 (3)0.8566 (5)0.81006 (14)0.0277 (9)
H330.24300.89860.77280.033*
N340.1661 (2)0.8665 (4)0.82605 (11)0.0264 (7)
C350.0830 (3)0.8212 (5)0.89824 (14)0.0255 (9)
C360.1686 (3)0.8107 (5)0.87972 (14)0.0242 (9)
N370.1618 (2)0.6414 (4)1.04390 (11)0.0249 (7)
N380.3246 (2)0.6204 (4)1.00712 (11)0.0234 (7)
C390.2392 (2)0.5753 (5)1.07664 (14)0.0234 (8)
C400.3194 (2)0.5643 (5)1.05802 (14)0.0232 (8)
C410.2379 (2)0.5126 (5)1.13276 (15)0.0262 (9)
C420.4015 (3)0.4789 (6)1.09385 (14)0.0266 (9)
N430.2383 (2)0.4598 (5)1.17721 (13)0.0321 (8)
N440.4638 (2)0.4043 (5)1.12187 (13)0.0350 (8)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0252 (19)0.0304 (19)0.0280 (17)0.0016 (14)0.0050 (15)0.0012 (14)
C20.027 (2)0.036 (2)0.036 (2)0.0012 (18)0.0094 (19)0.0017 (19)
C30.026 (2)0.033 (2)0.030 (2)0.0007 (18)0.0016 (17)0.0014 (18)
C40.030 (2)0.028 (2)0.0224 (19)0.0017 (17)0.0020 (17)0.0005 (16)
C50.024 (2)0.020 (2)0.0268 (19)0.0026 (16)0.0077 (16)0.0023 (16)
C60.033 (2)0.018 (2)0.0193 (18)0.0039 (16)0.0066 (16)0.0042 (15)
C70.027 (2)0.020 (2)0.0226 (19)0.0028 (16)0.0044 (17)0.0055 (16)
C80.031 (2)0.019 (2)0.0227 (19)0.0033 (16)0.0060 (17)0.0020 (16)
C90.024 (2)0.024 (2)0.029 (2)0.0012 (16)0.0040 (17)0.0004 (17)
C100.033 (2)0.027 (2)0.0218 (19)0.0039 (17)0.0005 (17)0.0017 (17)
C110.035 (2)0.023 (2)0.0224 (19)0.0004 (17)0.0018 (17)0.0005 (16)
N120.0288 (19)0.0250 (18)0.0253 (17)0.0036 (14)0.0067 (14)0.0032 (14)
C130.025 (2)0.018 (2)0.0241 (19)0.0017 (16)0.0038 (16)0.0032 (16)
C140.033 (2)0.0163 (19)0.0204 (19)0.0040 (16)0.0061 (17)0.0024 (15)
N150.0265 (18)0.0270 (18)0.0204 (16)0.0027 (14)0.0033 (13)0.0008 (14)
N160.0276 (19)0.0270 (18)0.0212 (16)0.0009 (14)0.0051 (14)0.0007 (14)
C170.028 (2)0.025 (2)0.0202 (18)0.0021 (17)0.0056 (16)0.0023 (16)
C180.029 (2)0.027 (2)0.024 (2)0.0019 (17)0.0084 (17)0.0031 (17)
C190.024 (2)0.036 (2)0.025 (2)0.0010 (17)0.0032 (17)0.0047 (19)
C200.029 (2)0.038 (2)0.023 (2)0.0020 (18)0.0039 (18)0.0002 (18)
N210.039 (2)0.041 (2)0.0283 (19)0.0000 (17)0.0065 (16)0.0016 (17)
N220.033 (2)0.052 (2)0.0313 (19)0.0024 (17)0.0085 (16)0.0018 (17)
N230.0220 (18)0.0324 (19)0.0271 (17)0.0011 (14)0.0002 (14)0.0019 (14)
C240.024 (2)0.032 (2)0.030 (2)0.0019 (17)0.0025 (17)0.0033 (18)
C250.024 (2)0.032 (2)0.032 (2)0.0008 (17)0.0067 (17)0.0021 (18)
C260.027 (2)0.028 (2)0.025 (2)0.0008 (17)0.0074 (17)0.0042 (17)
C270.027 (2)0.018 (2)0.0225 (18)0.0004 (16)0.0024 (16)0.0026 (16)
C280.026 (2)0.018 (2)0.0188 (18)0.0016 (16)0.0041 (16)0.0016 (15)
C290.024 (2)0.020 (2)0.0198 (18)0.0024 (16)0.0032 (16)0.0015 (15)
C300.024 (2)0.020 (2)0.0176 (18)0.0017 (15)0.0040 (15)0.0020 (15)
C310.027 (2)0.026 (2)0.026 (2)0.0010 (17)0.0069 (17)0.0003 (17)
C320.035 (2)0.022 (2)0.028 (2)0.0006 (17)0.0134 (18)0.0042 (17)
C330.040 (3)0.024 (2)0.0205 (19)0.0014 (17)0.0090 (18)0.0015 (16)
N340.0337 (19)0.0260 (18)0.0193 (16)0.0001 (14)0.0059 (14)0.0006 (14)
C350.030 (2)0.020 (2)0.0232 (19)0.0006 (16)0.0017 (17)0.0031 (16)
C360.031 (2)0.017 (2)0.0230 (19)0.0033 (16)0.0038 (17)0.0027 (16)
N370.0267 (18)0.0250 (18)0.0228 (16)0.0019 (14)0.0060 (14)0.0011 (14)
N380.0250 (18)0.0255 (18)0.0184 (15)0.0007 (14)0.0028 (13)0.0018 (13)
C390.024 (2)0.025 (2)0.0186 (18)0.0008 (16)0.0000 (16)0.0003 (16)
C400.024 (2)0.022 (2)0.0226 (19)0.0005 (16)0.0031 (16)0.0025 (16)
C410.022 (2)0.031 (2)0.024 (2)0.0016 (17)0.0021 (16)0.0003 (18)
C420.028 (2)0.032 (2)0.0206 (19)0.0028 (18)0.0076 (17)0.0025 (17)
N430.033 (2)0.037 (2)0.0253 (18)0.0037 (15)0.0055 (15)0.0006 (16)
N440.029 (2)0.044 (2)0.0282 (17)0.0007 (17)0.0008 (15)0.0021 (16)
Geometric parameters (Å, º) top
N1—C21.319 (5)N23—C241.326 (5)
N1—C131.346 (4)N23—C351.348 (4)
C2—C31.392 (5)C24—C251.393 (5)
C2—H20.8722C24—H240.9542
C3—C41.363 (5)C25—C261.368 (5)
C3—H30.9353C25—H251.0225
C4—C51.401 (5)C26—C271.400 (5)
C4—H40.9757C26—H260.9324
C5—C131.410 (5)C27—C351.419 (5)
C5—C61.449 (5)C27—C281.441 (5)
C6—N151.356 (4)C28—N371.355 (4)
C6—C71.408 (5)C28—C291.407 (5)
C7—N161.335 (5)C29—N381.338 (4)
C7—C81.460 (5)C29—C301.458 (5)
C8—C91.390 (5)C30—C361.395 (5)
C8—C141.396 (5)C30—C311.395 (5)
C9—C101.368 (5)C31—C321.370 (5)
C9—H90.9355C31—H310.9499
C10—C111.387 (5)C32—C331.393 (5)
C10—H100.9631C32—H321.0065
C11—N121.336 (5)C33—N341.318 (5)
C11—H111.0274C33—H330.9583
N12—C141.356 (4)N34—C361.364 (4)
C13—C141.469 (5)C35—C361.466 (5)
N15—C171.328 (4)N37—C391.323 (4)
N16—C181.337 (4)N38—C401.328 (4)
C17—C181.391 (5)C39—C401.391 (5)
C17—C191.451 (5)C39—C411.448 (5)
C18—C201.433 (6)C40—C421.453 (5)
C19—N211.152 (4)C41—N431.149 (4)
C20—N221.151 (5)C42—N441.141 (4)
C2—N1—C13116.1 (3)C24—N23—C35116.5 (3)
N1—C2—C3125.2 (4)N23—C24—C25125.2 (3)
N1—C2—H2114.5N23—C24—H24113.4
C3—C2—H2120.1C25—C24—H24121.4
C4—C3—C2119.1 (3)C26—C25—C24118.8 (4)
C4—C3—H3119.1C26—C25—H25121.4
C2—C3—H3121.8C24—C25—H25119.7
C3—C4—C5118.0 (3)C25—C26—C27118.2 (3)
C3—C4—H4123.7C25—C26—H26123.7
C5—C4—H4118.3C27—C26—H26118.0
C4—C5—C13118.6 (3)C26—C27—C35118.7 (3)
C4—C5—C6121.7 (3)C26—C27—C28121.9 (3)
C13—C5—C6119.7 (3)C35—C27—C28119.4 (3)
N15—C6—C7120.7 (3)N37—C28—C29121.4 (3)
N15—C6—C5119.1 (3)N37—C28—C27118.5 (3)
C7—C6—C5120.2 (3)C29—C28—C27120.1 (3)
N16—C7—C6121.8 (3)N38—C29—C28121.4 (3)
N16—C7—C8118.2 (3)N38—C29—C30117.7 (3)
C6—C7—C8120.0 (3)C28—C29—C30120.8 (3)
C9—C8—C14118.5 (3)C36—C30—C31118.5 (3)
C9—C8—C7121.3 (3)C36—C30—C29119.5 (3)
C14—C8—C7120.2 (3)C31—C30—C29122.1 (3)
C10—C9—C8119.4 (3)C32—C31—C30119.6 (3)
C10—C9—H9118.6C32—C31—H31122.0
C8—C9—H9121.9C30—C31—H31118.4
C9—C10—C11118.6 (3)C31—C32—C33117.8 (4)
C9—C10—H10127.3C31—C32—H32126.8
C11—C10—H10113.9C33—C32—H32115.4
N12—C11—C10123.7 (3)N34—C33—C32124.8 (3)
N12—C11—H11113.8N34—C33—H33117.8
C10—C11—H11122.4C32—C33—H33117.3
C11—N12—C14117.3 (3)C33—N34—C36117.1 (3)
N1—C13—C5123.1 (3)N23—C35—C27122.5 (3)
N1—C13—C14116.7 (3)N23—C35—C36117.2 (3)
C5—C13—C14120.2 (3)C27—C35—C36120.2 (3)
N12—C14—C8122.3 (3)N34—C36—C30122.2 (3)
N12—C14—C13118.1 (3)N34—C36—C35117.8 (3)
C8—C14—C13119.6 (3)C30—C36—C35119.9 (3)
C17—N15—C6116.6 (3)C39—N37—C28116.4 (3)
C7—N16—C18116.8 (3)C40—N38—C29116.0 (3)
N15—C17—C18122.3 (3)N37—C39—C40121.5 (3)
N15—C17—C19116.7 (3)N37—C39—C41117.8 (3)
C18—C17—C19121.0 (3)C40—C39—C41120.7 (3)
N16—C18—C17121.7 (3)N38—C40—C39123.2 (3)
N16—C18—C20117.2 (3)N38—C40—C42116.9 (3)
C17—C18—C20121.1 (3)C39—C40—C42119.8 (3)
N21—C19—C17179.7 (5)N43—C41—C39178.4 (4)
N22—C20—C18179.6 (4)N44—C42—C40177.0 (4)
(II) 6,7-dicyanodipyrido[f,h]quinoxalin-1-ium chloride dihydrate top
Crystal data top
C16H7N6+·Cl·2H2OF(000) = 728
Mr = 354.76Dx = 1.476 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 13.9417 (4) ÅCell parameters from 3363 reflections
b = 12.0846 (4) Åθ = 2.3–28.2°
c = 9.6350 (3) ŵ = 0.26 mm1
β = 100.452 (2)°T = 110 K
V = 1596.37 (9) Å3Prism, brown
Z = 40.35 × 0.20 × 0.15 mm
Data collection top
Nonius KappaCCD
diffractometer
2381 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.064
Graphite monochromatorθmax = 26.0°, θmin = 2.3°
Detector resolution: 12.8 pixels mm-1h = 1716
ω scansk = 140
10352 measured reflectionsl = 011
3123 independent reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.0452P)2 + 1.1734P]
where P = (Fo2 + 2Fc2)/3
3123 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = 0.32 e Å3
Crystal data top
C16H7N6+·Cl·2H2OV = 1596.37 (9) Å3
Mr = 354.76Z = 4
Monoclinic, P21/cMo Kα radiation
a = 13.9417 (4) ŵ = 0.26 mm1
b = 12.0846 (4) ÅT = 110 K
c = 9.6350 (3) Å0.35 × 0.20 × 0.15 mm
β = 100.452 (2)°
Data collection top
Nonius KappaCCD
diffractometer
2381 reflections with I > 2σ(I)
10352 measured reflectionsRint = 0.064
3123 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0520 restraints
wR(F2) = 0.115H-atom parameters constrained
S = 1.03Δρmax = 0.32 e Å3
3123 reflectionsΔρmin = 0.32 e Å3
226 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.75973 (14)0.33233 (16)0.7918 (2)0.0221 (4)
C20.70713 (17)0.40347 (19)0.7032 (3)0.0241 (5)
H20.71380.48010.72460.029*
C30.64304 (17)0.37227 (19)0.5812 (3)0.0241 (5)
H30.60650.42640.52250.029*
C40.63348 (17)0.26156 (19)0.5468 (3)0.0227 (5)
H40.59070.23800.46390.027*
C50.68847 (16)0.18459 (18)0.6371 (2)0.0196 (5)
C60.68205 (16)0.06605 (19)0.6108 (2)0.0199 (5)
C70.73486 (16)0.00940 (19)0.7081 (2)0.0204 (5)
C80.79683 (16)0.03143 (19)0.8362 (2)0.0208 (5)
C90.84669 (16)0.0393 (2)0.9396 (2)0.0232 (5)
H90.84280.11730.92670.028*
C100.90165 (17)0.0048 (2)1.0605 (3)0.0258 (5)
H100.93420.04251.13280.031*
C110.90891 (16)0.1190 (2)1.0755 (2)0.0244 (5)
H110.94740.15011.15780.029*
N120.86187 (13)0.18547 (16)0.9746 (2)0.0215 (4)
H120.86710.26300.99160.026*
C130.74986 (16)0.22408 (19)0.7580 (2)0.0201 (5)
C140.80420 (16)0.14550 (19)0.8562 (2)0.0203 (5)
N150.62308 (14)0.03087 (16)0.4928 (2)0.0218 (4)
N160.72888 (14)0.11932 (16)0.6872 (2)0.0225 (4)
C170.61963 (17)0.0777 (2)0.4715 (2)0.0222 (5)
C180.67229 (17)0.15258 (19)0.5684 (3)0.0233 (5)
C190.55883 (18)0.1163 (2)0.3424 (3)0.0264 (5)
C200.66499 (18)0.2700 (2)0.5376 (3)0.0276 (6)
N210.51073 (17)0.1478 (2)0.2413 (3)0.0387 (6)
N220.65543 (18)0.36158 (19)0.5067 (3)0.0389 (6)
Cl230.85399 (4)0.61888 (5)0.89553 (6)0.02914 (18)
O240.91258 (12)0.39233 (14)1.06754 (18)0.0293 (4)
H24A0.89060.44281.00660.035*
H24B0.98010.38691.07430.035*
O250.95440 (14)0.74483 (16)1.1736 (2)0.0370 (5)
H25A0.91690.76201.24060.044*
H25B0.91270.70351.10410.044*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0276 (10)0.0170 (10)0.0219 (10)0.0004 (8)0.0051 (9)0.0020 (8)
C20.0291 (12)0.0176 (12)0.0265 (13)0.0023 (10)0.0076 (11)0.0013 (10)
C30.0268 (12)0.0196 (12)0.0263 (13)0.0029 (10)0.0058 (10)0.0033 (10)
C40.0238 (12)0.0234 (13)0.0208 (12)0.0011 (10)0.0036 (10)0.0025 (10)
C50.0208 (11)0.0178 (12)0.0210 (12)0.0008 (9)0.0056 (10)0.0007 (10)
C60.0204 (11)0.0192 (12)0.0213 (12)0.0005 (9)0.0070 (10)0.0007 (10)
C70.0231 (11)0.0174 (12)0.0219 (12)0.0003 (9)0.0078 (10)0.0012 (10)
C80.0216 (11)0.0213 (12)0.0206 (12)0.0021 (9)0.0071 (10)0.0021 (10)
C90.0237 (12)0.0211 (12)0.0257 (13)0.0028 (10)0.0069 (10)0.0043 (10)
C100.0258 (12)0.0286 (14)0.0229 (12)0.0037 (11)0.0042 (10)0.0063 (11)
C110.0213 (11)0.0307 (14)0.0211 (12)0.0000 (10)0.0037 (10)0.0000 (11)
N120.0230 (10)0.0202 (11)0.0206 (10)0.0006 (8)0.0020 (8)0.0006 (8)
C130.0203 (11)0.0191 (12)0.0225 (12)0.0009 (9)0.0083 (10)0.0001 (10)
C140.0208 (11)0.0208 (12)0.0199 (11)0.0006 (9)0.0059 (10)0.0006 (10)
N150.0232 (10)0.0208 (10)0.0217 (10)0.0020 (8)0.0051 (8)0.0011 (8)
N160.0270 (10)0.0188 (10)0.0226 (10)0.0014 (8)0.0070 (9)0.0003 (8)
C170.0228 (12)0.0223 (12)0.0226 (12)0.0031 (10)0.0067 (10)0.0032 (10)
C180.0268 (12)0.0188 (12)0.0266 (13)0.0003 (10)0.0110 (11)0.0006 (10)
C190.0283 (13)0.0232 (13)0.0283 (14)0.0038 (11)0.0071 (11)0.0016 (11)
C200.0304 (13)0.0231 (14)0.0306 (14)0.0002 (11)0.0086 (11)0.0019 (11)
N210.0368 (13)0.0443 (15)0.0352 (13)0.0105 (11)0.0074 (11)0.0076 (12)
N220.0471 (14)0.0248 (13)0.0474 (15)0.0028 (10)0.0152 (12)0.0024 (11)
Cl230.0321 (3)0.0287 (3)0.0262 (3)0.0032 (3)0.0041 (2)0.0021 (3)
O240.0280 (9)0.0274 (10)0.0324 (10)0.0003 (7)0.0054 (8)0.0040 (8)
O250.0391 (11)0.0394 (11)0.0307 (10)0.0021 (9)0.0018 (9)0.0077 (8)
Geometric parameters (Å, º) top
N1—C21.334 (3)C10—C111.390 (4)
N1—C131.349 (3)C10—H100.9500
C2—C31.394 (3)C11—N121.338 (3)
C2—H20.9500C11—H110.9500
C3—C41.379 (3)N12—C141.360 (3)
C3—H30.9500N12—H120.9515
C4—C51.403 (3)C13—C141.453 (3)
C4—H40.9500N15—C171.328 (3)
C5—C131.398 (3)N16—C181.329 (3)
C5—C61.455 (3)C17—C181.408 (3)
C6—N151.345 (3)C17—C191.449 (4)
C6—C71.415 (3)C18—C201.449 (3)
C7—N161.344 (3)C19—N211.143 (3)
C7—C81.458 (3)C20—N221.148 (3)
C8—C141.393 (3)O24—H24A0.8639
C8—C91.399 (3)O24—H24B0.9335
C9—C101.380 (3)O25—H25A0.9245
C9—H90.9500O25—H25B0.9461
C2—N1—C13116.8 (2)C9—C10—H10120.3
N1—C2—C3124.0 (2)C11—C10—H10120.3
N1—C2—H2118.0N12—C11—C10120.2 (2)
C3—C2—H2118.0N12—C11—H11119.9
C4—C3—C2119.0 (2)C10—C11—H11119.9
C4—C3—H3120.5C11—N12—C14122.3 (2)
C2—C3—H3120.5C11—N12—H12116.9
C3—C4—C5118.4 (2)C14—N12—H12120.7
C3—C4—H4120.8N1—C13—C5123.5 (2)
C5—C4—H4120.8N1—C13—C14117.3 (2)
C13—C5—C4118.3 (2)C5—C13—C14119.2 (2)
C13—C5—C6119.4 (2)N12—C14—C8119.0 (2)
C4—C5—C6122.4 (2)N12—C14—C13118.2 (2)
N15—C6—C7121.4 (2)C8—C14—C13122.7 (2)
N15—C6—C5117.8 (2)C17—N15—C6116.3 (2)
C7—C6—C5120.7 (2)C18—N16—C7116.0 (2)
N16—C7—C6121.8 (2)N15—C17—C18122.2 (2)
N16—C7—C8118.2 (2)N15—C17—C19116.8 (2)
C6—C7—C8120.0 (2)C18—C17—C19121.1 (2)
C14—C8—C9119.5 (2)N16—C18—C17122.3 (2)
C14—C8—C7118.0 (2)N16—C18—C20118.8 (2)
C9—C8—C7122.5 (2)C17—C18—C20119.0 (2)
C10—C9—C8119.6 (2)N21—C19—C17179.3 (3)
C10—C9—H9120.2N22—C20—C18176.2 (3)
C8—C9—H9120.2H24A—O24—H24B109.0
C9—C10—C11119.4 (2)H25A—O25—H25B105.1
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N12—H12···O240.951.792.706 (3)160
O24—H24A···Cl230.862.393.2277 (18)162
O24—H24B···Cl23i0.932.283.2119 (18)176
O25—H25A···Cl23ii0.922.363.2140 (19)154
O25—H25B···Cl230.952.273.177 (2)160
Symmetry codes: (i) x+2, y1, z+2; (ii) x, y3/2, z+1/2.

Experimental details

(I)(II)
Crystal data
Chemical formulaC16H6N6C16H7N6+·Cl·2H2O
Mr282.27354.76
Crystal system, space groupMonoclinic, P21/cMonoclinic, P21/c
Temperature (K)110110
a, b, c (Å)15.0150 (14), 6.9620 (6), 24.5189 (16)13.9417 (4), 12.0846 (4), 9.6350 (3)
β (°) 104.224 (5) 100.452 (2)
V3)2484.5 (4)1596.37 (9)
Z84
Radiation typeMo KαMo Kα
µ (mm1)0.100.26
Crystal size (mm)0.35 × 0.30 × 0.150.35 × 0.20 × 0.15
Data collection
DiffractometerNonius KappaCCD
diffractometer
Nonius KappaCCD
diffractometer
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
13248, 4340, 2660 10352, 3123, 2381
Rint0.0840.064
(sin θ/λ)max1)0.5970.617
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.081, 0.169, 1.08 0.052, 0.115, 1.03
No. of reflections43403123
No. of parameters397226
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.23, 0.260.32, 0.32

Computer programs: COLLECT (Nonius, 1999), DENZO (Otwinowski & Minor, 1997), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996) and Mercury (Macrae et al., 2006).

Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
N12—H12···O240.951.792.706 (3)160
O24—H24A···Cl230.862.393.2277 (18)162
O24—H24B···Cl23i0.932.283.2119 (18)176
O25—H25A···Cl23ii0.922.363.2140 (19)154
O25—H25B···Cl230.952.273.177 (2)160
Symmetry codes: (i) x+2, y1, z+2; (ii) x, y3/2, z+1/2.
 

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