Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270107027497/fa3092sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270107027497/fa3092Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270107027497/fa3092IIsup3.hkl |
CCDC references: 659121; 659122
trans-3-(3-Pyridyl) acrylic acid, (I), was obtained commercially (Aldrich). Crystals of (I) were obtained by slow evaporation of a methanol solution. IR (KBr disc, ν, cm-1): 3500–2300 (O—H), 3052 (═C—H), 1702 (C═O), 1635 (C═C), 1580 and 1418 (C═C and C═N), 1284 (C—O).
The photodimer was prepared by topochemical reaction of (I). Crystals and powered crystalline material of (I) were irradiated with a 100 W H g lamp above 302 nm for 3 d. The product was purified as described in the literature (Lahav & Schmidt, 1967) (yield: 55–60%). IR (Medium?, ν, cm-1): 3500–2300 (O—H), 3057 (═C—H), 2955–2857 (C—H), 1717 (C═O), 1583 and 1422 (C═C and C═N), 1277(C—O); 1H NMR (Solvent?, δ, p.p.m.): 8.25 (2H, s, J = 1.86 Hz), 8.17 (2H, d, J = 3.84 Hz), 7.45 (2H, d, J = 6.24 Hz), 7.08 (2H, dd, J = 7.83 Hz), 4.25 (2H, d), 3.89 (2H, d, J = 6.24 Hz). Crystals of (II) were obtained by dissolving the dimer (200 mg) in distilled water (50 ml) and adjusting the pH to 1 with HCl. The resultant solution was allowed to evaporate slowly at room temperature. After 2–3 weeks, pale-yellow crystals suitable for X-ray analysis were formed. Attempts were made to optimize the exposure time, and thus ensure the maximum yield, by monitoring the degree of conversion of the photoreaction by FT–IR spectroscopy. It was found that compound (I) in the presence of KBr is photodegraded by decarboxylation. Interestingly, the CO2 released is partially trapped in the KBr disc. The CO2 band is enhanced as a function of the exposure time, and simultaneously a decrease in the relative intensity of the absorption band corresponding to the C═O stretch at 1702 cm-1 was observed. After 4 h of irradiation, a loss of resolution in the FT–IR spectrum was observed. This behaviour was not observed during direct UV irradiation of (I); apparently, the KBr matrix induced this process.
For (I), all H atoms bound to carbon were included in calculated positions. The H atom of the carboxylic acid group was located in a difference Fourier map. The H atoms were refined using a riding model, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C,O). For (II), all H atoms bound to carbon were included in calculated positions. H atoms on N and O atoms (carboxyl groups) were located in a difference Fourier map. The H atoms were refined using a riding model, with C—H = 0.93–0.98 Å and Uiso(H) = 1.2Ueq(C,N,O).
Data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1993) for (I); CrystalClear (Rigaku/MSC, 2000) for (II). Cell refinement: MSC/AFC Diffractometer Control Software for (I); CrystalClear for (II). Data reduction: TEXSAN (Molecular Structure Corporation, 1999) for (I); CrystalStructure (Rigaku/MSC and Rigaku Corporation, 2004) for (II). For both compounds, program(s) used to solve structure: SHELXTL-NT (Bruker, 1998); program(s) used to refine structure: SHELXTL-NT; molecular graphics: SHELXTL-NT and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXTL-NT and PLATON (Spek, 2003).
C8H7NO2 | F(000) = 312 |
Mr = 149.15 | Dx = 1.397 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 3.8205 (6) Å | θ = 34.4–38.6° |
b = 15.986 (2) Å | µ = 0.10 mm−1 |
c = 11.6080 (12) Å | T = 295 K |
β = 90.546 (11)° | Prism, colourless |
V = 708.90 (16) Å3 | 0.48 × 0.26 × 0.18 mm |
Z = 4 |
Rigaku AFC-7S diffractometer | 876 reflections with I > 2σ(I) |
Radiation source: normal-focus sealed tube | Rint = 0.017 |
Graphite monochromator | θmax = 25.0°, θmin = 2.2° |
ω/2θ scans | h = 0→4 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→19 |
Tmin = 0.900, Tmax = 0.960 | l = −13→13 |
1451 measured reflections | 3 standard reflections every 150 reflections |
1255 independent reflections | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0558P)2 + 0.1155P] where P = (Fo2 + 2Fc2)/3 |
1255 reflections | (Δ/σ)max < 0.001 |
100 parameters | Δρmax = 0.13 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C8H7NO2 | V = 708.90 (16) Å3 |
Mr = 149.15 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 3.8205 (6) Å | µ = 0.10 mm−1 |
b = 15.986 (2) Å | T = 295 K |
c = 11.6080 (12) Å | 0.48 × 0.26 × 0.18 mm |
β = 90.546 (11)° |
Rigaku AFC-7S diffractometer | 876 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.017 |
Tmin = 0.900, Tmax = 0.960 | 3 standard reflections every 150 reflections |
1451 measured reflections | intensity decay: none |
1255 independent reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.13 e Å−3 |
1255 reflections | Δρmin = −0.16 e Å−3 |
100 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.2544 (4) | 0.87148 (9) | 0.59595 (14) | 0.0499 (5) | |
O1 | 0.5537 (4) | 0.50929 (8) | 0.79155 (12) | 0.0588 (5) | |
H1 | 0.6246 | 0.4509 | 0.8284 | 0.071* | |
O2 | 0.3462 (5) | 0.42225 (9) | 0.65764 (13) | 0.0720 (5) | |
C1 | 0.3989 (5) | 0.49277 (11) | 0.69220 (17) | 0.0486 (5) | |
C2 | 0.2953 (5) | 0.56700 (12) | 0.62555 (16) | 0.0502 (5) | |
H2 | 0.1827 | 0.5585 | 0.5551 | 0.060* | |
C3 | 0.3505 (5) | 0.64459 (11) | 0.65851 (16) | 0.0441 (5) | |
H3 | 0.4635 | 0.6518 | 0.7291 | 0.053* | |
C4 | 0.2535 (5) | 0.72095 (11) | 0.59628 (15) | 0.0406 (5) | |
C5 | 0.3264 (5) | 0.79799 (11) | 0.64613 (16) | 0.0456 (5) | |
H5 | 0.4314 | 0.7986 | 0.7187 | 0.055* | |
C6 | 0.1018 (5) | 0.87005 (13) | 0.49228 (17) | 0.0531 (6) | |
H6 | 0.0503 | 0.9205 | 0.4561 | 0.064* | |
C7 | 0.0175 (5) | 0.79662 (13) | 0.43674 (16) | 0.0529 (5) | |
H7 | −0.0905 | 0.7980 | 0.3646 | 0.063* | |
C8 | 0.0934 (5) | 0.72107 (13) | 0.48824 (16) | 0.0478 (5) | |
H8 | 0.0385 | 0.6710 | 0.4514 | 0.057* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0623 (11) | 0.0384 (9) | 0.0490 (10) | 0.0007 (7) | −0.0056 (8) | 0.0015 (7) |
O1 | 0.0873 (11) | 0.0351 (7) | 0.0536 (8) | 0.0005 (7) | −0.0211 (7) | −0.0038 (6) |
O2 | 0.1110 (14) | 0.0370 (8) | 0.0676 (10) | −0.0033 (8) | −0.0249 (9) | −0.0098 (7) |
C1 | 0.0593 (12) | 0.0382 (11) | 0.0482 (11) | −0.0027 (9) | −0.0049 (9) | −0.0061 (8) |
C2 | 0.0632 (13) | 0.0419 (11) | 0.0453 (11) | −0.0015 (9) | −0.0142 (9) | −0.0042 (9) |
C3 | 0.0486 (11) | 0.0422 (11) | 0.0415 (10) | −0.0012 (9) | −0.0089 (8) | −0.0015 (8) |
C4 | 0.0400 (10) | 0.0420 (10) | 0.0397 (9) | −0.0012 (8) | −0.0022 (8) | −0.0020 (7) |
C5 | 0.0545 (12) | 0.0401 (10) | 0.0419 (10) | −0.0009 (9) | −0.0083 (9) | −0.0001 (8) |
C6 | 0.0593 (13) | 0.0483 (12) | 0.0515 (12) | 0.0050 (9) | −0.0065 (10) | 0.0081 (9) |
C7 | 0.0548 (13) | 0.0600 (13) | 0.0436 (11) | 0.0022 (10) | −0.0115 (9) | 0.0019 (9) |
C8 | 0.0491 (12) | 0.0484 (12) | 0.0459 (11) | −0.0028 (9) | −0.0080 (9) | −0.0048 (8) |
N1—C6 | 1.332 (2) | C3—H3 | 0.9300 |
N1—C5 | 1.339 (2) | C4—C5 | 1.388 (2) |
O1—C1 | 1.318 (2) | C4—C8 | 1.390 (2) |
O1—H1 | 1.0608 | C5—H5 | 0.9300 |
O2—C1 | 1.213 (2) | C6—C7 | 1.376 (3) |
C1—C2 | 1.469 (3) | C6—H6 | 0.9300 |
C2—C3 | 1.314 (2) | C7—C8 | 1.377 (3) |
C2—H2 | 0.9300 | C7—H7 | 0.9300 |
C3—C4 | 1.464 (2) | C8—H8 | 0.9300 |
C6—N1—C5 | 117.66 (17) | C8—C4—C3 | 123.59 (17) |
C1—O1—H1 | 106.7 | N1—C5—C4 | 123.90 (17) |
O2—C1—O1 | 123.19 (18) | N1—C5—H5 | 118.0 |
O2—C1—C2 | 122.25 (18) | C4—C5—H5 | 118.0 |
O1—C1—C2 | 114.55 (16) | N1—C6—C7 | 122.43 (18) |
C3—C2—C1 | 124.56 (18) | N1—C6—H6 | 118.8 |
C3—C2—H2 | 117.7 | C7—C6—H6 | 118.8 |
C1—C2—H2 | 117.7 | C6—C7—C8 | 119.82 (17) |
C2—C3—C4 | 127.16 (18) | C6—C7—H7 | 120.1 |
C2—C3—H3 | 116.4 | C8—C7—H7 | 120.1 |
C4—C3—H3 | 116.4 | C7—C8—C4 | 118.80 (18) |
C5—C4—C8 | 117.37 (17) | C7—C8—H8 | 120.6 |
C5—C4—C3 | 119.04 (16) | C4—C8—H8 | 120.6 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1i | 1.06 | 1.61 | 2.660 (2) | 170 |
C5—H5···O2ii | 0.93 | 2.58 | 3.263 (2) | 130 |
C8—H8···O2iii | 0.93 | 2.44 | 3.299 (2) | 154 |
C3—H3···O1 | 0.93 | 2.41 | 2.765 (2) | 102 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2; (iii) −x, −y+1, −z+1. |
C16H16N2O42+·2Cl− | F(000) = 768 |
Mr = 371.21 | Dx = 1.475 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71070 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 1256 reflections |
a = 7.3938 (13) Å | θ = 1.9–28.0° |
b = 14.829 (3) Å | µ = 0.41 mm−1 |
c = 15.250 (3) Å | T = 295 K |
V = 1672.1 (6) Å3 | Prism, pale yellow |
Z = 4 | 0.48 × 0.23 × 0.16 mm |
Rigaku AFC-7S Mercury diffractometer | 3310 independent reflections |
Radiation source: normal-focus sealed tube | 2872 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
Detector resolution: 14.6306 pixels mm-1 | θmax = 28.2°, θmin = 1.9° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (Jacobson, 1998) | k = −17→17 |
Tmin = 0.820, Tmax = 0.912 | l = −17→13 |
19377 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H-atom parameters constrained |
wR(F2) = 0.103 | w = 1/[σ2(Fo2) + (0.0456P)2 + 0.4231P] where P = (Fo2 + 2Fc2)/3 |
S = 1.15 | (Δ/σ)max = 0.001 |
3310 reflections | Δρmax = 0.22 e Å−3 |
220 parameters | Δρmin = −0.32 e Å−3 |
0 restraints | Absolute structure: Flack (1983), with how many Friedel pairs? |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.01 (7) |
C16H16N2O42+·2Cl− | V = 1672.1 (6) Å3 |
Mr = 371.21 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.3938 (13) Å | µ = 0.41 mm−1 |
b = 14.829 (3) Å | T = 295 K |
c = 15.250 (3) Å | 0.48 × 0.23 × 0.16 mm |
Rigaku AFC-7S Mercury diffractometer | 3310 independent reflections |
Absorption correction: multi-scan (Jacobson, 1998) | 2872 reflections with I > 2σ(I) |
Tmin = 0.820, Tmax = 0.912 | Rint = 0.036 |
19377 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | H-atom parameters constrained |
wR(F2) = 0.103 | Δρmax = 0.22 e Å−3 |
S = 1.15 | Δρmin = −0.32 e Å−3 |
3310 reflections | Absolute structure: Flack (1983), with how many Friedel pairs? |
220 parameters | Absolute structure parameter: −0.01 (7) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.01679 (10) | 0.02345 (5) | 1.10215 (4) | 0.04509 (19) | |
Cl2 | 1.01910 (11) | 0.20072 (6) | 0.42467 (5) | 0.0527 (2) | |
O1 | 0.6160 (4) | 0.27763 (14) | 0.88370 (14) | 0.0617 (7) | |
H1OH | 0.5740 | 0.3327 | 0.9010 | 0.074* | |
O2 | 0.5483 (4) | 0.22581 (14) | 1.01689 (13) | 0.0618 (7) | |
O3 | 0.4059 (3) | 0.01199 (14) | 1.04300 (12) | 0.0465 (5) | |
H3OH | 0.2824 | 0.0161 | 1.0553 | 0.094 (14)* | |
O4 | 0.3283 (3) | 0.06142 (17) | 0.91129 (14) | 0.0572 (6) | |
N1 | 0.9711 (4) | 0.16586 (16) | 0.61851 (14) | 0.0433 (6) | |
H1N | 0.9446 | 0.1787 | 0.5611 | 0.087 (13)* | |
N2 | 1.1274 (3) | −0.11219 (16) | 0.85947 (15) | 0.0405 (6) | |
H2N | 1.2144 | −0.1244 | 0.8980 | 0.044 (8)* | |
C1 | 0.6404 (3) | 0.03711 (17) | 0.94119 (17) | 0.0322 (6) | |
H1 | 0.7141 | 0.0062 | 0.9854 | 0.039* | |
C2 | 0.7131 (3) | 0.13231 (18) | 0.91619 (16) | 0.0341 (6) | |
H2 | 0.8401 | 0.1366 | 0.9341 | 0.041* | |
C3 | 0.7057 (4) | 0.10716 (17) | 0.81825 (16) | 0.0314 (6) | |
H3 | 0.5932 | 0.1301 | 0.7927 | 0.038* | |
C4 | 0.6789 (4) | 0.00538 (17) | 0.84576 (16) | 0.0315 (6) | |
H4 | 0.5700 | −0.0200 | 0.8188 | 0.038* | |
C5 | 0.6163 (4) | 0.21536 (19) | 0.94606 (19) | 0.0417 (7) | |
C6 | 0.4421 (4) | 0.03832 (18) | 0.96247 (18) | 0.0360 (6) | |
C7 | 0.8620 (4) | 0.13203 (17) | 0.75994 (17) | 0.0310 (6) | |
C8 | 0.8338 (4) | 0.14348 (18) | 0.67147 (18) | 0.0381 (6) | |
H8 | 0.7185 | 0.1356 | 0.6483 | 0.046* | |
C9 | 1.1398 (5) | 0.1771 (2) | 0.6472 (2) | 0.0516 (8) | |
H9 | 1.2318 | 0.1924 | 0.6084 | 0.062* | |
C10 | 1.1758 (4) | 0.1658 (3) | 0.7343 (2) | 0.0559 (9) | |
H10 | 1.2927 | 0.1737 | 0.7555 | 0.067* | |
C11 | 1.0377 (4) | 0.1428 (2) | 0.79064 (19) | 0.0439 (7) | |
H11 | 1.0623 | 0.1343 | 0.8499 | 0.053* | |
C12 | 0.8412 (4) | −0.05184 (17) | 0.82664 (17) | 0.0324 (6) | |
C13 | 0.9783 (4) | −0.06920 (18) | 0.88566 (17) | 0.0371 (6) | |
H13 | 0.9668 | −0.0509 | 0.9437 | 0.045* | |
C14 | 1.1542 (4) | −0.1396 (2) | 0.77667 (18) | 0.0413 (7) | |
H14 | 1.2624 | −0.1670 | 0.7606 | 0.050* | |
C15 | 1.0205 (5) | −0.12671 (18) | 0.71637 (17) | 0.0435 (7) | |
H15 | 1.0345 | −0.1469 | 0.6591 | 0.052* | |
C16 | 0.8643 (4) | −0.08322 (19) | 0.74177 (18) | 0.0406 (7) | |
H16 | 0.7723 | −0.0747 | 0.7010 | 0.049* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0383 (4) | 0.0477 (4) | 0.0492 (4) | −0.0055 (3) | 0.0098 (3) | −0.0064 (3) |
Cl2 | 0.0459 (4) | 0.0678 (5) | 0.0445 (4) | 0.0131 (4) | 0.0092 (3) | 0.0119 (3) |
O1 | 0.0921 (18) | 0.0366 (12) | 0.0566 (14) | 0.0125 (12) | 0.0291 (13) | 0.0054 (10) |
O2 | 0.0878 (17) | 0.0493 (13) | 0.0482 (13) | 0.0095 (13) | 0.0308 (12) | −0.0033 (9) |
O3 | 0.0408 (12) | 0.0561 (13) | 0.0425 (11) | 0.0053 (10) | 0.0129 (8) | 0.0109 (10) |
O4 | 0.0308 (11) | 0.0906 (18) | 0.0504 (13) | 0.0043 (12) | −0.0001 (9) | 0.0131 (12) |
N1 | 0.0547 (16) | 0.0414 (14) | 0.0339 (13) | −0.0042 (12) | 0.0111 (12) | 0.0008 (9) |
N2 | 0.0327 (13) | 0.0424 (14) | 0.0465 (14) | 0.0053 (11) | −0.0063 (10) | −0.0069 (10) |
C1 | 0.0278 (13) | 0.0335 (14) | 0.0352 (15) | 0.0039 (11) | 0.0013 (10) | 0.0001 (10) |
C2 | 0.0295 (13) | 0.0380 (15) | 0.0348 (14) | −0.0018 (12) | 0.0052 (10) | −0.0036 (11) |
C3 | 0.0275 (14) | 0.0311 (14) | 0.0355 (14) | 0.0035 (11) | 0.0023 (11) | 0.0002 (11) |
C4 | 0.0272 (13) | 0.0322 (14) | 0.0352 (13) | −0.0014 (11) | −0.0007 (10) | 0.0010 (10) |
C5 | 0.0453 (17) | 0.0373 (15) | 0.0425 (17) | −0.0057 (13) | 0.0087 (13) | −0.0019 (12) |
C6 | 0.0365 (15) | 0.0332 (15) | 0.0383 (14) | −0.0017 (12) | 0.0049 (12) | −0.0006 (11) |
C7 | 0.0293 (13) | 0.0279 (13) | 0.0359 (15) | 0.0040 (11) | 0.0029 (10) | 0.0018 (10) |
C8 | 0.0403 (16) | 0.0336 (15) | 0.0405 (16) | −0.0030 (13) | 0.0039 (12) | −0.0032 (11) |
C9 | 0.048 (2) | 0.054 (2) | 0.053 (2) | −0.0022 (16) | 0.0245 (15) | 0.0034 (15) |
C10 | 0.0297 (17) | 0.078 (2) | 0.060 (2) | −0.0001 (16) | 0.0066 (14) | 0.0048 (17) |
C11 | 0.0370 (16) | 0.0548 (18) | 0.0397 (15) | 0.0031 (15) | 0.0015 (12) | 0.0073 (13) |
C12 | 0.0310 (14) | 0.0284 (13) | 0.0377 (14) | −0.0034 (11) | 0.0020 (11) | −0.0014 (10) |
C13 | 0.0361 (14) | 0.0379 (15) | 0.0373 (14) | 0.0039 (13) | −0.0006 (12) | −0.0077 (10) |
C14 | 0.0401 (17) | 0.0380 (15) | 0.0459 (17) | 0.0051 (14) | 0.0090 (13) | −0.0076 (12) |
C15 | 0.0568 (19) | 0.0405 (15) | 0.0333 (14) | 0.0119 (16) | 0.0031 (14) | −0.0057 (11) |
C16 | 0.0472 (18) | 0.0380 (15) | 0.0366 (15) | 0.0059 (14) | −0.0048 (13) | −0.0026 (11) |
O1—C5 | 1.326 (4) | C3—C4 | 1.579 (4) |
O1—H1OH | 0.9131 | C3—H3 | 0.9800 |
O2—C5 | 1.201 (3) | C4—C12 | 1.498 (4) |
O3—C6 | 1.316 (3) | C4—H4 | 0.9800 |
O3—H3OH | 0.9344 | C7—C8 | 1.376 (4) |
O4—C6 | 1.198 (3) | C7—C11 | 1.390 (4) |
N1—C9 | 1.333 (4) | C8—H8 | 0.9300 |
N1—C8 | 1.339 (3) | C9—C10 | 1.364 (5) |
N1—H1N | 0.9166 | C9—H9 | 0.9300 |
N2—C13 | 1.335 (3) | C10—C11 | 1.378 (4) |
N2—C14 | 1.341 (3) | C10—H10 | 0.9300 |
N2—H2N | 0.8900 | C11—H11 | 0.9300 |
C1—C6 | 1.502 (4) | C12—C13 | 1.380 (4) |
C1—C4 | 1.556 (3) | C12—C16 | 1.386 (4) |
C1—C2 | 1.558 (4) | C13—H13 | 0.9300 |
C1—H1 | 0.9800 | C14—C15 | 1.363 (4) |
C2—C5 | 1.496 (4) | C14—H14 | 0.9300 |
C2—C3 | 1.540 (4) | C15—C16 | 1.378 (4) |
C2—H2 | 0.9800 | C15—H15 | 0.9300 |
C3—C7 | 1.504 (4) | C16—H16 | 0.9300 |
C5—O1—H1OH | 114.6 | O1—C5—C2 | 110.8 (2) |
C6—O3—H3OH | 111.5 | O4—C6—O3 | 123.4 (3) |
C9—N1—C8 | 122.8 (3) | O4—C6—C1 | 123.3 (3) |
C9—N1—H1N | 119.2 | O3—C6—C1 | 113.4 (2) |
C8—N1—H1N | 117.7 | C8—C7—C11 | 117.2 (3) |
C13—N2—C14 | 123.3 (3) | C8—C7—C3 | 119.6 (2) |
C13—N2—H2N | 119.8 | C11—C7—C3 | 123.2 (2) |
C14—N2—H2N | 116.9 | N1—C8—C7 | 120.5 (3) |
C6—C1—C4 | 112.6 (2) | N1—C8—H8 | 119.8 |
C6—C1—C2 | 112.3 (2) | C7—C8—H8 | 119.8 |
C4—C1—C2 | 88.97 (18) | N1—C9—C10 | 119.2 (3) |
C6—C1—H1 | 113.6 | N1—C9—H9 | 120.4 |
C4—C1—H1 | 113.6 | C10—C9—H9 | 120.4 |
C2—C1—H1 | 113.6 | C9—C10—C11 | 119.5 (3) |
C5—C2—C3 | 118.5 (2) | C9—C10—H10 | 120.2 |
C5—C2—C1 | 120.4 (2) | C11—C10—H10 | 120.2 |
C3—C2—C1 | 90.33 (19) | C10—C11—C7 | 120.7 (3) |
C5—C2—H2 | 108.7 | C10—C11—H11 | 119.6 |
C3—C2—H2 | 108.7 | C7—C11—H11 | 119.6 |
C1—C2—H2 | 108.7 | C13—C12—C16 | 117.1 (3) |
C7—C3—C2 | 119.1 (2) | C13—C12—C4 | 124.5 (2) |
C7—C3—C4 | 119.2 (2) | C16—C12—C4 | 118.1 (2) |
C2—C3—C4 | 88.75 (19) | N2—C13—C12 | 120.1 (2) |
C7—C3—H3 | 109.4 | N2—C13—H13 | 120.0 |
C2—C3—H3 | 109.4 | C12—C13—H13 | 120.0 |
C4—C3—H3 | 109.4 | N2—C14—C15 | 119.0 (3) |
C12—C4—C1 | 120.0 (2) | N2—C14—H14 | 120.5 |
C12—C4—C3 | 112.9 (2) | C15—C14—H14 | 120.5 |
C1—C4—C3 | 88.99 (19) | C14—C15—C16 | 118.9 (2) |
C12—C4—H4 | 111.0 | C14—C15—H15 | 120.5 |
C1—C4—H4 | 111.0 | C16—C15—H15 | 120.5 |
C3—C4—H4 | 111.0 | C15—C16—C12 | 121.5 (3) |
O2—C5—O1 | 123.7 (3) | C15—C16—H16 | 119.2 |
O2—C5—C2 | 125.5 (3) | C12—C16—H16 | 119.2 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1OH···Cl1i | 0.91 | 2.17 | 3.047 (2) | 160 |
O3—H3OH···Cl1 | 0.93 | 2.09 | 3.020 (2) | 172 |
N1—H1N···Cl2 | 0.92 | 2.18 | 3.022 (2) | 153 |
N2—H2N···Cl2ii | 0.89 | 2.31 | 3.089 (3) | 146 |
C9—H9···Cl2iii | 0.93 | 2.70 | 3.514 (3) | 147 |
C11—H11···O4iv | 0.93 | 2.43 | 3.075 (3) | 126 |
C13—H13···Cl1iv | 0.93 | 2.68 | 3.587 (3) | 165 |
C14—H14···O1v | 0.93 | 2.52 | 3.221 (3) | 133 |
C15—H15···O2vi | 0.93 | 2.54 | 3.417 (3) | 158 |
C16—H16···Cl1vii | 0.93 | 2.72 | 3.641 (3) | 169 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) −x+5/2, −y, z+1/2; (iii) x+1/2, −y+1/2, −z+1; (iv) x+1, y, z; (v) −x+2, y−1/2, −z+3/2; (vi) −x+3/2, −y, z−1/2; (vii) −x+1/2, −y, z−1/2. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C8H7NO2 | C16H16N2O42+·2Cl− |
Mr | 149.15 | 371.21 |
Crystal system, space group | Monoclinic, P21/c | Orthorhombic, P212121 |
Temperature (K) | 295 | 295 |
a, b, c (Å) | 3.8205 (6), 15.986 (2), 11.6080 (12) | 7.3938 (13), 14.829 (3), 15.250 (3) |
α, β, γ (°) | 90, 90.546 (11), 90 | 90, 90, 90 |
V (Å3) | 708.90 (16) | 1672.1 (6) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.41 |
Crystal size (mm) | 0.48 × 0.26 × 0.18 | 0.48 × 0.23 × 0.16 |
Data collection | ||
Diffractometer | Rigaku AFC-7S diffractometer | Rigaku AFC-7S Mercury diffractometer |
Absorption correction | ψ scan (North et al., 1968) | Multi-scan (Jacobson, 1998) |
Tmin, Tmax | 0.900, 0.960 | 0.820, 0.912 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 1451, 1255, 876 | 19377, 3310, 2872 |
Rint | 0.017 | 0.036 |
(sin θ/λ)max (Å−1) | 0.595 | 0.664 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.112, 1.03 | 0.038, 0.103, 1.15 |
No. of reflections | 1255 | 3310 |
No. of parameters | 100 | 220 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.13, −0.16 | 0.22, −0.32 |
Absolute structure | ? | Flack (1983), with how many Friedel pairs? |
Absolute structure parameter | ? | −0.01 (7) |
Computer programs: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1993), CrystalClear (Rigaku/MSC, 2000), MSC/AFC Diffractometer Control Software, CrystalClear, TEXSAN (Molecular Structure Corporation, 1999), CrystalStructure (Rigaku/MSC and Rigaku Corporation, 2004), SHELXTL-NT (Bruker, 1998), SHELXTL-NT and DIAMOND (Brandenburg, 1998), SHELXTL-NT and PLATON (Spek, 2003).
O1—C1 | 1.318 (2) | C2—C3 | 1.314 (2) |
O2—C1 | 1.213 (2) | C3—C4 | 1.464 (2) |
C1—C2 | 1.469 (3) | ||
C6—N1—C5 | 117.66 (17) | O1—C1—C2 | 114.55 (16) |
O2—C1—O1 | 123.19 (18) | C3—C2—C1 | 124.56 (18) |
O2—C1—C2 | 122.25 (18) | C2—C3—C4 | 127.16 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1i | 1.06 | 1.61 | 2.660 (2) | 170.2 |
C5—H5···O2ii | 0.93 | 2.58 | 3.263 (2) | 130.4 |
C8—H8···O2iii | 0.93 | 2.44 | 3.299 (2) | 153.7 |
C3—H3···O1 | 0.93 | 2.41 | 2.765 (2) | 102.2 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2; (iii) −x, −y+1, −z+1. |
O1—C5 | 1.326 (4) | C1—C4 | 1.556 (3) |
O2—C5 | 1.201 (3) | C1—C2 | 1.558 (4) |
O3—C6 | 1.316 (3) | C2—C3 | 1.540 (4) |
O4—C6 | 1.198 (3) | C3—C4 | 1.579 (4) |
C9—N1—C8 | 122.8 (3) | C2—C3—C4 | 88.75 (19) |
C13—N2—C14 | 123.3 (3) | C1—C4—C3 | 88.99 (19) |
C4—C1—C2 | 88.97 (18) | O2—C5—O1 | 123.7 (3) |
C3—C2—C1 | 90.33 (19) | O4—C6—O3 | 123.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1OH···Cl1i | 0.91 | 2.17 | 3.047 (2) | 159.6 |
O3—H3OH···Cl1 | 0.93 | 2.09 | 3.020 (2) | 171.6 |
N1—H1N···Cl2 | 0.92 | 2.18 | 3.022 (2) | 152.8 |
N2—H2N···Cl2ii | 0.89 | 2.31 | 3.089 (3) | 146.4 |
C9—H9···Cl2iii | 0.93 | 2.70 | 3.514 (3) | 147.0 |
C11—H11···O4iv | 0.93 | 2.43 | 3.075 (3) | 126.3 |
C13—H13···Cl1iv | 0.93 | 2.68 | 3.587 (3) | 164.8 |
C14—H14···O1v | 0.93 | 2.52 | 3.221 (3) | 132.9 |
C15—H15···O2vi | 0.93 | 2.54 | 3.417 (3) | 157.6 |
C16—H16···Cl1vii | 0.93 | 2.72 | 3.641 (3) | 169.0 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) −x+5/2, −y, z+1/2; (iii) x+1/2, −y+1/2, −z+1; (iv) x+1, y, z; (v) −x+2, y−1/2, −z+3/2; (vi) −x+3/2, −y, z−1/2; (vii) −x+1/2, −y, z−1/2. |
Organic reactions performed in the solid state are considered an important green alternative for the preparation of both new and conventional compounds (Toda, 2005; MacGillivray et al., 2004; Gao et al., 2004; Tanaka & Toda, 2000; Xiao et al., 2000; Garcia-Garibay, 2003; Ramamurthy & Venkatesan, 1987; Díaz de Delgado et al., 1991). A particular case of solid-state reactions is [2 + 2] photocycloaddition, in which the nature and features of the products can be controlled by topochemical parameters (Schmidt, 1971). This alternative offers regio- and stereoselective control combined with quantitative yields. These advantages make the assembly of olefins in the solid state an efficient route for regiocontrolled access to versatile multitopic organic molecules. Such compounds turn out to be very interesting as building blocks for designing novel supramolecular metal assemblies with unusual topologies (Papaefstathiou & MacGillivray, 2002; Papaefstathiou et al., 2005; Papaefstathiou, Milios & MacGillivray, 2004; Papaefstathiou, Hamilton et al., 2004; Lee et al., 2005; Kim & Jung, 2002). As part of our interest in the study of potentially photo- and thermally reactive solids (Briceño et al., 2006, 2002, 1999), we have re-investigated the photoreactivity of trans-3-(3-pyridyl)acrylic acid, (I), to prepare a tetratopic ligand containing either pyridyl or carboxylic acid groups. The solid-state reactivity of the title compound, (I), was previously studied by Lahav & Schmidt (1967). However, neither the crystal structure of the starting material nor that of the dimer have yet been reported in the literature. Here, the crystal structures of (I) and a hydrogen-bonded supramolecular array based on the photoproduct, (II), are reported.
The molecule of (I) (Fig. 1) adopts a nearly planar conformation with a maximum deviation from the mean molecular plane of 0.007 (2) Å. The molecule displays a C—H···O intramolecular hydrogen bond [C···O = 2.765 (2) Å, C3—H3···O1 = 102.2°], which leads to the formation of a five-membered ring described by the S(5) graph-set symbol (Bernstein et al., 1995).
The crystal structure of (I) consists of the self-assembly of molecules via a heterodimeric hydrogen-bonded synthon based on the interaction between the pyridine and carboxylic groups. This supramolecular motif, described as R22(7), is repeated along the b direction to generate zigzag supramolecular ribbons with distances O1···N1i = 2.660 (2) Å and C5···O2i = 3.263 (2) Å [symmetry code: (i) 1 - x, -1/2 + y, 3/2 - z]. Adjacent ribbons are linked by two complementary C—H···O hydrogen bonds [C8···O2ii = 3.299 (3) Å; symmetry code: (ii) -x, 1 - y, 1 - z]. These interactions induce self-assembly of parallel ribbons in an alternating head-to-tail fashion, resulting in a two-dimensional hydrogen-bonded array in the bc plane (Fig. 2a). The three-dimensional network is achieved by stacking of the sheets through π–π interactions along the a axis (interlayer distance ca 3.8 Å).
A remarkable feature of the structure of (I) is the presence of close contacts between the double bonds of neighbouring molecules related by translation along the a axis [centroid-to-centroid distance = 3.812 (1) Å]. This structural feature is responsible for the photoreactivity that is displayed by (I) in the solid state (Fig. 2b).
As expected, UV irradiation of (I) produces the dimer. The 1H NMR spectrum confirms the photocycloaddition (see Experimental section) The stereochemistry of the product was confirmed by the single-crystal structure analysis of compound (II), which revealed the formation of a typical truxinic acid analogue (head-to-head dimer). This result is in agreement with the expected topochemical control by the crystalline starting structure, and with the results previously reported by Lahav & Schmidt (1967), based on the characterization of the compound by 1H NMR spectroscopy and other chemicophysical observations.
The asymmetric unit of (II) consists of the diprotonated β-dimer, C16H16N2O42+ (Fig. 3), and two Cl- anions. The cyclobutane ring is slightly puckered; the flap C4 atom deviates 0.354 (5) Å from the plane of the other three atoms of the four-membered ring. This value is similar to those observed for other substituted cyclobutanes that do not crystallize on a centre of symmetry (Abdelmoty et al., 2005; Kanao et al., 1990; Pani et al., 1995). Both pyridinium rings, as well as the carboxylic acid groups, are twisted out of the mean plane of the cyclobutane ring: the mean planes of the pyridinium rings based on N1 (C7–C11) and N2 (C12–C16), and the carboxylic acid groups O1/C5/O2 and O4/C6/O3, are rotated by 69.0 (1), 79.1 (1), 35.9 (3) and 86.2 (3)°, respectively (Fig. 3).
An analysis of the bond distances and angles of the pyridyl rings in (I) and (II) only reveals significant differences in the internal C—N—C angle of both protonated N atoms. These values are greater in (II) than those found for (I) (Tables 1 and 2).
The structure of (II) consists of a three-dimensional hydrogen-bonded network, which is built up by self-assembly of the cations and Cl- anions via different C—H···Cl, O—H···Cl and N+—H···Cl hydrogen-bonding interactions. In this structure, the Cl- anions act as structure-directing agents of this assembly, and each Cl- anion is an acceptor of multiple hydrogen-bonding interactions. Atom Cl1 is acceptor of four hydrogen bonds from different adjacent dications, whereas atom Cl2 accepts only three hydrogen bonds. Details of the hydrogen-bonding geometry in (II) are given in Table 2. The cations are self-assembled through O—H···Cl interactions between carboxylic acid groups and Cl1 atoms, generating one-dimensional helical chains running along the a axis (Fig. 4). The central axis about each chain is a twofold screw axis. Neighbouring helical arrangements (shown dark in Fig. 5) are cross-linked by additional N+—H···Cl hydrogen bonds, involving pyridinium units through the H atom of the protonated ring, and C—H···Cl interactions, to afford a three-dimensional hydrogen-bonded assembly (Fig. 5).