The X-ray crystal structure analysis of the title compound, C
17H
30O
8, revealed a
4C1 conformation of the pyranosyl ring [Cremer–Pople puckering parameters of
Q = 0.568 (2) Å, θ = 5.1 (2) and φ = 218 (3)°]. The structure shows no deviations from the geometric parameters of pyranoside carbohydrates. The hydroxyl groups participate in O—H
O hydrogen bonds, forming a two-dimensional pattern [O
O = 2.811 (3) and 2.995 (3) Å].
Supporting information
CCDC reference: 211740
Compound (I) was synthesized as the major product (yield: 49%) in the acylation of methyl-α-D-mannopyranoside (485 mg, 2.5 mmol) with 5 equivalents of pivaloyl chloride (1.54 ml, 12.5 mmol). The mixture in dry pyridine (1.5 ml) was stirred at room temperature for 50 min, and the products were isolated by column chromatography on silica gel (Trojko, 1999). Colourless single crystals of adequate quality for diffraction analysis were obtained by evaporation from diisopropyl ether (m.p. = 362–364 K).
The tert-butyl group at C9 displays large displacement parameters, indicating the possible presence of positional disorder. Contoured electron-density Fourier maps were drawn at the final stages of refinement, in order to reveal possible multiple positions for the atoms C11–C13. Note that the reflections observed have very sharp maxima (Rint=0.0268). Since the contour map does not reveal a partial disorder of atoms C11, C12 and C13, and the maximum peak of residual electron density was 0.158 e Å−3, the ordered model was used in the final refinement. Most H atoms were visible in the difference maps but were placed at calculated positions and refined as riding atoms [Uiso(H) = 1.5 Ueq(C) for CH3; Uiso(H) = 1.2 Ueq(C) for other atoms). The positions of the hydroxy H atoms were determined from difference electron-density maps and were refined freely along with individual Uiso parameters. The absolute configuration could not be determined from the diffraction data because of the absence of significant anomalous scatterers in the compound, and an attempt to confirm the absolute structure by the refinement of the Flack parameter (Flack, 1983) led to an inconclusive value (Flack & Bernardelli, 2000). Therefore, Friedel equivalents were merged in the final refinement, and the absolute structure was set in accordance with the known chirality of the methyl-α-D-mannopyranoside precursor.
Data collection: STADI4 (Stoe & Cie, 1995); cell refinement: STADI4 (Stoe & Cie, 1995); data reduction: X-RED (Stoe & Cie, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON98 (Spek, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
'methyl 3,6-di-O-pivaloyl-
α-
D-mannopyranoside'
top
Crystal data top
C17H30O8 | Dx = 1.194 Mg m−3 |
Mr = 362.41 | Melting point: 362-364 K K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 38 reflections |
a = 6.8711 (11) Å | θ = 10.1–17.8° |
b = 15.231 (2) Å | µ = 0.09 mm−1 |
c = 19.263 (3) Å | T = 293 K |
V = 2016.0 (5) Å3 | Prism, colourless |
Z = 4 | 0.55 × 0.35 × 0.30 mm |
F(000) = 784 | |
Data collection top
Philips PW 1100 (upgraded by Stoe) diffractometer | Rint = 0.027 |
Radiation source: fine-focus sealed tube | θmax = 27.0°, θmin = 2.9° |
Graphite monochromator | h = −8→8 |
ω–scans | k = −19→19 |
4972 measured reflections | l = −24→24 |
2487 independent reflections | 5 standard reflections every 90 min |
2268 reflections with I > 2σ(I) | intensity decay: 5.8% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: geom & dmap |
R[F2 > 2σ(F2)] = 0.043 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.120 | w = 1/[σ2(Fo2) + (0.0646P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.93 | (Δ/σ)max = 0.002 |
4343 reflections | Δρmax = 0.16 e Å−3 |
242 parameters | Δρmin = −0.15 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0133 (16) |
Crystal data top
C17H30O8 | V = 2016.0 (5) Å3 |
Mr = 362.41 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.8711 (11) Å | µ = 0.09 mm−1 |
b = 15.231 (2) Å | T = 293 K |
c = 19.263 (3) Å | 0.55 × 0.35 × 0.30 mm |
Data collection top
Philips PW 1100 (upgraded by Stoe) diffractometer | Rint = 0.027 |
4972 measured reflections | 5 standard reflections every 90 min |
2487 independent reflections | intensity decay: 5.8% |
2268 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.93 | Δρmax = 0.16 e Å−3 |
4343 reflections | Δρmin = −0.15 e Å−3 |
242 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.5829 (3) | 0.66392 (11) | 0.00467 (9) | 0.0473 (4) | |
O2 | 0.3784 (3) | 0.72115 (15) | 0.17042 (11) | 0.0614 (6) | |
H22 | 0.283 (8) | 0.752 (3) | 0.165 (3) | 0.15 (2)* | |
O3 | 0.6345 (3) | 0.86347 (10) | 0.15893 (8) | 0.0464 (5) | |
O4 | 0.9835 (2) | 0.76914 (13) | 0.17472 (10) | 0.0450 (4) | |
H44 | 0.973 (4) | 0.807 (2) | 0.2015 (15) | 0.055 (10)* | |
O5 | 0.6528 (2) | 0.59850 (11) | 0.11202 (9) | 0.0421 (4) | |
O6 | 0.9958 (3) | 0.50237 (11) | 0.12785 (8) | 0.0506 (5) | |
O8 | 0.5792 (3) | 0.93935 (11) | 0.06213 (11) | 0.0619 (6) | |
O9 | 0.9822 (3) | 0.41165 (11) | 0.21884 (11) | 0.0557 (5) | |
C1 | 0.5184 (4) | 0.64821 (16) | 0.07276 (12) | 0.0428 (6) | |
H1 | 0.3964 | 0.6150 | 0.0701 | 0.051* | |
C2 | 0.4747 (3) | 0.73633 (17) | 0.10589 (14) | 0.0443 (6) | |
H2 | 0.3920 | 0.7715 | 0.0752 | 0.053* | |
C3 | 0.6659 (4) | 0.78382 (15) | 0.11952 (12) | 0.0381 (6) | |
H3 | 0.7296 | 0.7978 | 0.0754 | 0.046* | |
C4 | 0.7998 (3) | 0.72768 (15) | 0.16369 (13) | 0.0363 (6) | |
H4 | 0.7378 | 0.7159 | 0.2086 | 0.044* | |
C5 | 0.8350 (3) | 0.64089 (15) | 0.12557 (13) | 0.0364 (6) | |
H5 | 0.9040 | 0.6517 | 0.0819 | 0.044* | |
C6 | 0.9492 (4) | 0.57787 (14) | 0.16991 (13) | 0.0444 (6) | |
H6A | 1.0676 | 0.6056 | 0.1863 | 0.053* | |
H6B | 0.8727 | 0.5602 | 0.2099 | 0.053* | |
C7 | 0.5996 (5) | 0.58572 (18) | −0.03506 (16) | 0.0593 (8) | |
H7A | 0.7032 | 0.5503 | −0.0168 | 0.089* | |
H7B | 0.6274 | 0.6004 | −0.0825 | 0.089* | |
H7C | 0.4796 | 0.5536 | −0.0328 | 0.089* | |
C8 | 0.5914 (4) | 0.93673 (15) | 0.12454 (14) | 0.0412 (6) | |
C9 | 1.0048 (4) | 0.42383 (15) | 0.15763 (15) | 0.0458 (6) | |
C10 | 1.0504 (6) | 0.35327 (19) | 0.10514 (16) | 0.0762 (11) | |
C14 | 0.5653 (4) | 1.01546 (17) | 0.17175 (14) | 0.0497 (7) | |
C15 | 0.5406 (5) | 0.9896 (2) | 0.24774 (15) | 0.0660 (9) | |
H15A | 0.4307 | 0.9511 | 0.2523 | 0.099* | |
H15B | 0.5196 | 1.0414 | 0.2752 | 0.099* | |
H15C | 0.6558 | 0.9602 | 0.2636 | 0.099* | |
C16 | 0.7510 (7) | 1.0699 (2) | 0.1639 (2) | 0.0895 (12) | |
H16A | 0.7481 | 1.1180 | 0.1961 | 0.134* | |
H16B | 0.7592 | 1.0922 | 0.1174 | 0.134* | |
H16C | 0.8621 | 1.0336 | 0.1733 | 0.134* | |
C17 | 0.3844 (7) | 1.0659 (2) | 0.1481 (2) | 0.1004 (15) | |
H17A | 0.2717 | 1.0292 | 0.1531 | 0.151* | |
H17B | 0.3990 | 1.0825 | 0.1003 | 0.151* | |
H17C | 0.3692 | 1.1176 | 0.1761 | 0.151* | |
C11 | 1.0981 (11) | 0.2692 (2) | 0.1403 (2) | 0.135 (2) | |
H11A | 1.1100 | 0.2235 | 0.1063 | 0.203* | |
H11B | 0.9964 | 0.2546 | 0.1724 | 0.203* | |
H11C | 1.2189 | 0.2753 | 0.1649 | 0.203* | |
C12 | 1.2174 (11) | 0.3839 (4) | 0.0572 (3) | 0.164 (3) | |
H12A | 1.3323 | 0.3941 | 0.0844 | 0.246* | |
H12B | 1.1802 | 0.4373 | 0.0342 | 0.246* | |
H12C | 1.2436 | 0.3394 | 0.0232 | 0.246* | |
C13 | 0.8765 (14) | 0.3443 (4) | 0.0583 (4) | 0.222 (5) | |
H13A | 0.9039 | 0.3020 | 0.0227 | 0.333* | |
H13B | 0.8483 | 0.4001 | 0.0373 | 0.333* | |
H13C | 0.7663 | 0.3253 | 0.0849 | 0.333* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0533 (10) | 0.0430 (10) | 0.0458 (9) | 0.0005 (9) | −0.0049 (8) | 0.0000 (8) |
O2 | 0.0394 (10) | 0.0808 (15) | 0.0640 (13) | 0.0105 (10) | 0.0124 (10) | 0.0046 (11) |
O3 | 0.0582 (11) | 0.0348 (9) | 0.0462 (9) | 0.0157 (8) | −0.0013 (9) | −0.0035 (8) |
O4 | 0.0348 (9) | 0.0423 (10) | 0.0578 (11) | 0.0018 (9) | −0.0022 (9) | −0.0092 (9) |
O5 | 0.0401 (9) | 0.0346 (8) | 0.0517 (10) | −0.0017 (8) | −0.0040 (9) | 0.0029 (8) |
O6 | 0.0695 (12) | 0.0331 (9) | 0.0493 (9) | 0.0183 (9) | 0.0020 (9) | 0.0043 (8) |
O8 | 0.0890 (16) | 0.0446 (10) | 0.0520 (12) | 0.0126 (10) | −0.0018 (11) | 0.0027 (9) |
O9 | 0.0694 (13) | 0.0407 (10) | 0.0571 (12) | 0.0041 (10) | 0.0000 (11) | 0.0095 (9) |
C1 | 0.0351 (13) | 0.0450 (14) | 0.0483 (14) | 0.0010 (12) | −0.0024 (12) | 0.0023 (12) |
C2 | 0.0358 (13) | 0.0482 (15) | 0.0488 (14) | 0.0091 (12) | 0.0004 (12) | 0.0025 (12) |
C3 | 0.0449 (14) | 0.0311 (13) | 0.0384 (13) | 0.0083 (11) | 0.0040 (11) | −0.0011 (11) |
C4 | 0.0317 (12) | 0.0331 (13) | 0.0440 (14) | 0.0000 (10) | 0.0025 (11) | 0.0007 (11) |
C5 | 0.0324 (13) | 0.0362 (13) | 0.0405 (12) | 0.0036 (10) | 0.0021 (11) | 0.0026 (11) |
C6 | 0.0504 (16) | 0.0348 (14) | 0.0480 (15) | 0.0096 (11) | −0.0009 (13) | −0.0002 (11) |
C7 | 0.0651 (19) | 0.0554 (18) | 0.0574 (17) | 0.0053 (16) | −0.0014 (15) | −0.0086 (14) |
C8 | 0.0404 (14) | 0.0334 (13) | 0.0497 (16) | 0.0049 (12) | −0.0014 (12) | −0.0018 (12) |
C9 | 0.0466 (15) | 0.0356 (14) | 0.0552 (17) | 0.0048 (12) | −0.0069 (15) | 0.0057 (12) |
C10 | 0.129 (3) | 0.0381 (15) | 0.0610 (18) | 0.0199 (18) | −0.014 (2) | −0.0031 (14) |
C14 | 0.0540 (16) | 0.0381 (14) | 0.0570 (16) | 0.0112 (12) | −0.0093 (14) | −0.0114 (12) |
C15 | 0.073 (2) | 0.0659 (19) | 0.0594 (16) | 0.0155 (17) | 0.0051 (15) | −0.0171 (15) |
C16 | 0.123 (3) | 0.067 (2) | 0.078 (2) | −0.035 (2) | 0.002 (2) | −0.011 (2) |
C17 | 0.116 (3) | 0.087 (3) | 0.098 (3) | 0.072 (3) | −0.036 (2) | −0.031 (2) |
C11 | 0.263 (7) | 0.051 (2) | 0.093 (3) | 0.060 (3) | 0.006 (4) | −0.0003 (19) |
C12 | 0.254 (8) | 0.106 (4) | 0.132 (4) | 0.058 (4) | 0.107 (5) | −0.004 (3) |
C13 | 0.314 (10) | 0.136 (5) | 0.216 (7) | 0.073 (6) | −0.184 (8) | −0.090 (5) |
Geometric parameters (Å, º) top
O1—C1 | 1.405 (3) | C7—H7C | 0.9600 |
O1—C7 | 1.420 (3) | C8—C14 | 1.516 (3) |
O2—C2 | 1.427 (3) | C9—C10 | 1.509 (4) |
O2—H22 | 0.82 (5) | C10—C11 | 1.485 (5) |
O3—C8 | 1.331 (3) | C10—C13 | 1.504 (7) |
O3—C3 | 1.447 (3) | C10—C12 | 1.545 (7) |
O4—C4 | 1.427 (3) | C14—C15 | 1.525 (4) |
O4—H44 | 0.77 (3) | C14—C16 | 1.529 (5) |
O5—C1 | 1.414 (3) | C14—C17 | 1.530 (4) |
O5—C5 | 1.433 (3) | C15—H15A | 0.9600 |
O6—C9 | 1.328 (3) | C15—H15B | 0.9600 |
O6—C6 | 1.443 (3) | C15—H15C | 0.9600 |
O8—C8 | 1.206 (3) | C16—H16A | 0.9600 |
O9—C9 | 1.204 (3) | C16—H16B | 0.9600 |
C1—C2 | 1.516 (3) | C16—H16C | 0.9600 |
C1—H1 | 0.9800 | C17—H17A | 0.9600 |
C2—C3 | 1.522 (4) | C17—H17B | 0.9600 |
C2—H2 | 0.9800 | C17—H17C | 0.9600 |
C3—C4 | 1.517 (3) | C11—H11A | 0.9600 |
C3—H3 | 0.9800 | C11—H11B | 0.9600 |
C4—C5 | 1.531 (3) | C11—H11C | 0.9600 |
C4—H4 | 0.9800 | C12—H12A | 0.9600 |
C5—C6 | 1.505 (3) | C12—H12B | 0.9600 |
C5—H5 | 0.9800 | C12—H12C | 0.9600 |
C6—H6A | 0.9700 | C13—H13A | 0.9600 |
C6—H6B | 0.9700 | C13—H13B | 0.9600 |
C7—H7A | 0.9600 | C13—H13C | 0.9600 |
C7—H7B | 0.9600 | | |
| | | |
C1—O1—C7 | 112.7 (2) | O9—C9—O6 | 123.8 (2) |
C2—O2—H22 | 99 (4) | O9—C9—C10 | 125.0 (2) |
C8—O3—C3 | 118.35 (18) | O6—C9—C10 | 111.2 (2) |
C4—O4—H44 | 110 (2) | C11—C10—C13 | 111.8 (5) |
C1—O5—C5 | 115.28 (17) | C11—C10—C9 | 110.8 (3) |
C9—O6—C6 | 119.06 (19) | C13—C10—C9 | 107.6 (4) |
O1—C1—O5 | 112.6 (2) | C11—C10—C12 | 111.7 (4) |
O1—C1—C2 | 107.7 (2) | C13—C10—C12 | 105.0 (5) |
O5—C1—C2 | 112.2 (2) | C9—C10—C12 | 109.9 (3) |
O1—C1—H1 | 108.0 | C8—C14—C15 | 112.6 (2) |
O5—C1—H1 | 108.0 | C8—C14—C16 | 105.7 (2) |
C2—C1—H1 | 108.0 | C15—C14—C16 | 109.1 (3) |
O2—C2—C1 | 108.4 (2) | C8—C14—C17 | 108.3 (2) |
O2—C2—C3 | 109.1 (2) | C15—C14—C17 | 108.9 (3) |
C1—C2—C3 | 108.82 (18) | C16—C14—C17 | 112.1 (3) |
O2—C2—H2 | 110.2 | C14—C15—H15A | 109.5 |
C1—C2—H2 | 110.2 | C14—C15—H15B | 109.5 |
C3—C2—H2 | 110.2 | H15A—C15—H15B | 109.5 |
O3—C3—C4 | 105.59 (19) | C14—C15—H15C | 109.5 |
O3—C3—C2 | 111.09 (19) | H15A—C15—H15C | 109.5 |
C4—C3—C2 | 110.62 (19) | H15B—C15—H15C | 109.5 |
O3—C3—H3 | 109.8 | C14—C16—H16A | 109.5 |
C4—C3—H3 | 109.8 | C14—C16—H16B | 109.5 |
C2—C3—H3 | 109.8 | H16A—C16—H16B | 109.5 |
O4—C4—C3 | 111.75 (19) | C14—C16—H16C | 109.5 |
O4—C4—C5 | 108.28 (18) | H16A—C16—H16C | 109.5 |
C3—C4—C5 | 108.26 (19) | H16B—C16—H16C | 109.5 |
O4—C4—H4 | 109.5 | C14—C17—H17A | 109.5 |
C3—C4—H4 | 109.5 | C14—C17—H17B | 109.5 |
C5—C4—H4 | 109.5 | H17A—C17—H17B | 109.5 |
O5—C5—C6 | 105.75 (18) | C14—C17—H17C | 109.5 |
O5—C5—C4 | 109.77 (18) | H17A—C17—H17C | 109.5 |
C6—C5—C4 | 111.14 (19) | H17B—C17—H17C | 109.5 |
O5—C5—H5 | 110.0 | C10—C11—H11A | 109.5 |
C6—C5—H5 | 110.0 | C10—C11—H11B | 109.5 |
C4—C5—H5 | 110.0 | H11A—C11—H11B | 109.5 |
O6—C6—C5 | 107.77 (19) | C10—C11—H11C | 109.5 |
O6—C6—H6A | 110.2 | H11A—C11—H11C | 109.5 |
C5—C6—H6A | 110.2 | H11B—C11—H11C | 109.5 |
O6—C6—H6B | 110.2 | C10—C12—H12A | 109.5 |
C5—C6—H6B | 110.2 | C10—C12—H12B | 109.5 |
H6A—C6—H6B | 108.5 | H12A—C12—H12B | 109.5 |
O1—C7—H7A | 109.5 | C10—C12—H12C | 109.5 |
O1—C7—H7B | 109.5 | H12A—C12—H12C | 109.5 |
H7A—C7—H7B | 109.5 | H12B—C12—H12C | 109.5 |
O1—C7—H7C | 109.5 | C10—C13—H13A | 109.5 |
H7A—C7—H7C | 109.5 | C10—C13—H13B | 109.5 |
H7B—C7—H7C | 109.5 | H13A—C13—H13B | 109.5 |
O8—C8—O3 | 122.6 (2) | C10—C13—H13C | 109.5 |
O8—C8—C14 | 124.3 (2) | H13A—C13—H13C | 109.5 |
O3—C8—C14 | 113.0 (2) | H13B—C13—H13C | 109.5 |
| | | |
C7—O1—C1—O5 | 64.8 (3) | O4—C4—C5—C6 | 64.8 (2) |
C7—O1—C1—C2 | −170.9 (2) | C3—C4—C5—C6 | −173.8 (2) |
C5—O5—C1—O1 | 65.5 (3) | C9—O6—C6—C5 | −146.7 (2) |
C5—O5—C1—C2 | −56.3 (3) | O5—C5—C6—O6 | 67.5 (2) |
O1—C1—C2—O2 | 170.30 (19) | C4—C5—C6—O6 | −173.41 (19) |
O5—C1—C2—O2 | −65.2 (2) | C3—O3—C8—O8 | −0.6 (4) |
O1—C1—C2—C3 | −71.2 (2) | C3—O3—C8—C14 | −179.1 (2) |
O5—C1—C2—C3 | 53.3 (3) | C6—O6—C9—O9 | −2.4 (4) |
C8—O3—C3—C4 | 153.5 (2) | C6—O6—C9—C10 | 178.6 (3) |
C8—O3—C3—C2 | −86.5 (3) | O9—C9—C10—C11 | −9.9 (6) |
O2—C2—C3—O3 | −54.8 (2) | O6—C9—C10—C11 | 169.0 (4) |
C1—C2—C3—O3 | −172.86 (19) | O9—C9—C10—C13 | 112.5 (5) |
O2—C2—C3—C4 | 62.1 (2) | O6—C9—C10—C13 | −68.6 (5) |
C1—C2—C3—C4 | −55.9 (3) | O9—C9—C10—C12 | −133.8 (4) |
O3—C3—C4—O4 | −62.3 (2) | O6—C9—C10—C12 | 45.1 (4) |
C2—C3—C4—O4 | 177.47 (18) | O8—C8—C14—C15 | 166.3 (3) |
O3—C3—C4—C5 | 178.59 (18) | O3—C8—C14—C15 | −15.2 (3) |
C2—C3—C4—C5 | 58.3 (2) | O8—C8—C14—C16 | −74.6 (4) |
C1—O5—C5—C6 | 177.77 (18) | O3—C8—C14—C16 | 103.9 (3) |
C1—O5—C5—C4 | 57.8 (2) | O8—C8—C14—C17 | 45.7 (4) |
O4—C4—C5—O5 | −178.52 (19) | O3—C8—C14—C17 | −135.8 (3) |
C3—C4—C5—O5 | −57.2 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H22···O4i | 0.82 (5) | 2.08 (5) | 2.811 (3) | 149 (5) |
O4—H44···O9ii | 0.78 (3) | 2.23 (3) | 2.995 (3) | 167 (3) |
C6—H6A···O4 | 0.97 | 2.57 | 2.924 (3) | 102 |
Symmetry codes: (i) x−1, y, z; (ii) −x+2, y+1/2, −z+1/2. |
Experimental details
Crystal data |
Chemical formula | C17H30O8 |
Mr | 362.41 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 6.8711 (11), 15.231 (2), 19.263 (3) |
V (Å3) | 2016.0 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.55 × 0.35 × 0.30 |
|
Data collection |
Diffractometer | Philips PW 1100 (upgraded by Stoe) diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4972, 2487, 2268 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.638 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.120, 0.93 |
No. of reflections | 4343 |
No. of parameters | 242 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.16, −0.15 |
Selected geometric parameters (Å, º) topO1—C1 | 1.405 (3) | O6—C6 | 1.443 (3) |
O1—C7 | 1.420 (3) | O8—C8 | 1.206 (3) |
O2—C2 | 1.427 (3) | O9—C9 | 1.204 (3) |
O3—C8 | 1.331 (3) | C1—C2 | 1.516 (3) |
O3—C3 | 1.447 (3) | C2—C3 | 1.522 (4) |
O4—C4 | 1.427 (3) | C3—C4 | 1.517 (3) |
O5—C1 | 1.414 (3) | C4—C5 | 1.531 (3) |
O5—C5 | 1.433 (3) | C5—C6 | 1.505 (3) |
O6—C9 | 1.328 (3) | | |
| | | |
C5—O5—C1—C2 | −56.3 (3) | C2—C3—C4—C5 | 58.3 (2) |
O1—C1—C2—O2 | 170.30 (19) | C1—O5—C5—C4 | 57.8 (2) |
O5—C1—C2—C3 | 53.3 (3) | O4—C4—C5—O5 | −178.52 (19) |
O2—C2—C3—O3 | −54.8 (2) | C3—C4—C5—O5 | −57.2 (2) |
C1—C2—C3—C4 | −55.9 (3) | O4—C4—C5—C6 | 64.8 (2) |
O3—C3—C4—O4 | −62.3 (2) | C4—C5—C6—O6 | −173.41 (19) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H22···O4i | 0.82 (5) | 2.08 (5) | 2.811 (3) | 149 (5) |
O4—H44···O9ii | 0.78 (3) | 2.23 (3) | 2.995 (3) | 167 (3) |
C6—H6A···O4 | 0.97 | 2.57 | 2.924 (3) | 102 |
Symmetry codes: (i) x−1, y, z; (ii) −x+2, y+1/2, −z+1/2. |
The methyl α-glycosides of glucose, mannose and galactose constitute a valuable series of compounds in the study of hydrogen-bonding patterns and conformational stability in pyranose sugars and their derivatives. Other factors, such as van der Waals and dipole interactions and the shape and size of the substituents on the sugar residues, also play an important role in the determination of molecular packing.
Regioselective acylation of sugars is rarely carried out with efficiency. Therefore, the selective pivaloylations of methyl α-D-glycosides receive much attention in carbohydrate chemistry, as do selective enzymatic deacylations of such compounds. Migrations of the pivaloyl group have also been observed, and these intramolecular transesterifications in reactions catalyzed by esterases from some mammalian sera have been studied by Tomić (1999).
The structure determination of the title compound. (I), as the major product of the pivaloylation of methyl α-D-mannopyranoside (Trojko, 1999), was undertaken in order to investigate the conformation of the pyranoside ring and the hydrogen-bonding pattern in the solid state.
The main conformational feature of the pyranosyl ring in (I) is the expected 4C1 conformation, with a slightly distorted chair geometry, as shown by the range of the ring torsion angles [53.3 (3)–58.3 (2)°]. Thes values can be compared with 60° for an ideal chair conformation and 55.8–61.7° for an ideal pyranose ring (Kim & Jeffrey, 1967). The Cremer & Pople (1975) puckering parameters [Q=0.568 (2) Å, θ=5.1 (2) and ϕ=218 (3)°] are analogous to those found for other mannose derivatives in the Cambridge Structural Database (Version 5.23; Allen, 2002).
The Csp3—Csp3 bond lengths within the pyranosyl moiety range from 1.505 (3) to 1.531 (3) Å [(mean = 1.518 (4) Å], which agrees with the values reported for other carbohydrates (Jeffrey, 1990; Allen et al., 1987). The external C5—C6 bond is short [1.505 (3) Å] and the ring C4—C5 distance is long [1.531 (3) Å]. The Csp3—O bond distances, however, show a greater variation, ranging between 1.405 (3) and 1.447 (3) Å.
The anomeric C1—O1 bond [1.405 (3) Å] is slightly shorter than the endocyclic C1—O5 and C5—O5 bonds [1.414 (3) and 1.433 (3) Å], as is found in pyranosidic compounds. These bond lengths, which are related to the acetal sequence C5—O5—C1—O1—C7, are ascribed to the anomeric effect and are consistent with observations in many α- and β-pyranoses. A systematic survey of this geometry in α-anomers of hexapyranosides gave the following average values: C1—O1 = 1.398, C1—O5 = 1.419 and C5—O5 = 1.434 Å (Jeffrey, 1990; Jeffrey & Taylor, 1980), or C1—O1 = 1.413((2), C1—O5 = 1.418 (1) and C5—O5 = 1.439 (2) Å (Allen & Fortier, 1993). The exocyclic C—O bonds in (I) are in the range 1.405 (3)–1.447 (3) Å [mean = 1.427 (9) Å]. The two O—H bonds are 0.82 (5) and 0.78 (3) Å.
The crystal structure is dominated by a two-dimensional network of O—H···O-type hydrogen bonds and involves free hydroxyl groups: OH4 acts both as a donor and as an acceptor, whereas OH2 acts only as a donor (Table 2 and Fig. 2). The OH4 H atom appears to be hydrogen bonded to O9(2 − x, −1/2 + y, 1/2 − z) at a distance of 2.23 (3) Å, with the two O atoms subtending an angle of 167 (3)°. The associated O4···O9 distance is 2.995 (3) Å. The OH2 H atom is hydrogen bonded to O4(−1 + x, y, z) at a distance of 2.08 (5) Å, with an OH2···O4 angle of 149 (5)° and an O2···O4 distance of 2.811 (3) Å. The resulting motif, in the formalism of graph-set analysis of hydrogen-bond patterns (Etter et al., 1990), is characterized as an R44(28) ring pattern. According to Jeffrey's (Jeffrey, 1990) investigation, cyclic hydrogen-bonded systems are rare in mono- and disaccharide crystal structures.
In addition, a short intramolecular C—H···O hydrogen bond occurs in (I). Atom C6 acts as hydrogen-bond donor and O4 as hydrogen-bond acceptor (Table 2). This C—H···O contact, where H and O are separated by four covalent bonds, is characterized as S(5) according to Etter's classification (Etter et al., 1990). These interactions are a structural characteristic of the carbohydrates. Because of the conformational flexibility, the geometric parameters of C—H···O contacts may vary over considerable ranges [the mean values are H···O = 2.60, C···O = 2.92 Å and C—H···O = 96°; Steiner & Saenger, 1992]. Several other C—H···O interactions in (I), which include methyl C atoms, exhibit geometrical parameters similar to these reported average values (with angles ranging from 93 to 100°), but these interactions are not included in Table 2.
The calculated density is 1.194 g cm−3, which is significantly lower than that of carbohydrates with free OH groups, e.g. 1.412 g cm−3 in 3-deoxy-methyl-α-D-mannopyranoside (Evdokimov & Frolow, 1997), 1.416 g cm−3 in methyl α-L-mannopyranoside (Shalaby et al., 1994a), 1.461 g cm−3 in methyl α-D-mannopyranoside (Jeffrey et al., 1977) and 1.564 g cm−3 in α-D-mannopyranose (Longchambon et al., 1976), or the values reported for acylated monosaccharides, e.g. 1.244 g cm−3 in methyl 2,3,4-tri-O-acetyl-α-L-mannopyranoside (Shalaby et al., 1994b) and 1.324 g cm−3 in 1,2,3,4,6,7-hexa-O-acetyl-L-glycero-D-mannopyranoside (Duda et al., 1986). This fact points to a looser packing, probably caused by the bulky pivaloyl groups, which exhibit augmented displacements. Also, the intramolecular C—H···O contacts mentioned above have no significant influence in reducing the thermal vibrations of the pivaloyl C atoms.