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Different tautomeric and zwitterionic forms of chelidamic acid (4-hydroxypyridine-2,6-dicarboxylic acid) are present in the crystal structures of chelidamic acid methanol monosolvate, C
7H
5NO
5·CH
4O, (I
a), dimethylammonium chelidamate (dimethylammonium 6-carboxy-4-hydroxypyridine-2-carboxylate), C
2H
8N
+·C
7H
4NO
5−, (I
b), and chelidamic acid dimethyl sulfoxide monosolvate, C
7H
5NO
5·C
2H
6OS, (I
c). While the zwitterionic pyridinium carboxylate in (I
a) can be explained from the p
Ka values, a (partially) deprotonated hydroxy group in the presence of a neutral carboxy group, as observed in (I
b) and (I
c), is unexpected. In (I
b), there are two formula units in the asymmetric unit with the chelidamic acid entities connected by a symmetric O—H
O hydrogen bond. Also, crystals of chelidamic acid dimethyl ester (dimethyl 4-hydroxypyridine-2,6-dicarboxylate) were obtained as a monohydrate, C
9H
9NO
5·H
2O, (II
a), and as a solvent-free modification, in which both ester molecules adopt the hydroxypyridine form. In (II
a), the solvent water molecule stabilizes the synperiplanar conformation of both carbonyl O atoms with respect to the pyridine N atom by two O—H
O hydrogen bonds, whereas an antiperiplanar arrangement is observed in the water-free structure. A database study and
ab initio energy calculations help to compare the stabilities of the various ester conformations.
Supporting information
CCDC references: 908132; 908133; 908134; 908135
Single crystals of (Ia), (Ib) and (Ic) were obtained by
recrystallization of commercially available chelidamic acid from various
solvents. Chelidamic acid (5.5 mg, 0.030 mmol) dissolved in methanol (520 µl)
at 323 K yielded (Ia) by slow evaporation over several days. Compound
(Ib) was obtained by recrystallization of chelidamic acid (5.1 mg,
0.028 mmol) from dimethylformamide (75 µl) at 323 K, pseudopolymorph
(Ic) by recrystallization of chelidamic acid (5.1 mg, 0.028 mmol) from
dimethyl sulfoxide (55 µl) at 269 K.
Chelidamic acid dimethyl ester was prepared from chelidamic acid (1.0 g, 0.005 mol) by reaction with methanol (75 ml) in the presence of sulfuric acid (100
µl). After refluxing at 373 K for 2 h, the mixture was cooled and extracted
with ethyl acetate (3 × 185 ml) from water. The organic layer was dried
over magnesium sulfate. The solvent was removed, whereupon (IIa)
precipitated as a light-yellow solid (0.97 g, 84%). [The solvent-free form had
been obtained by recrystallization of chelidamic acid dimethyl ester (5.5 mg,
0.026 mmol) from tetrahydrofuran (50 µl) at room temperature.]
All H atoms were initially located by difference Fourier synthesis.
Subsequently, H atoms bonded to C atoms were refined using a riding model,
with methyl C—H = 0.98 Å and aromatic C—H = 0.95 Å, and with
Uiso(H) = 1.5Ueq(C) for methyl or 1.2Ueq(C) for
aromatic H atoms. Apart from (IIa), the methyl groups were allowed to
rotate about their local threefold axes.
In (Ia), (Ib) and (IIa), H atoms bonded to N or O atoms
were refined isotropically.
In (Ib), a symmetric hydrogen bond was verified by close examination of
the difference electron-density map, which clearly showed one maximum between
two O atoms.
In (Ic), H atoms bonded to the N atom and to the carboxy O62 atom were
refined isotropically. A free isotropic refinement of the H atoms bonded to
carboxy atom O22 and hydroxy atom O41 resulted in symmetric hydrogen bonds,
with both H atoms at inversion centres. However, the difference
electron-density map revealed that both H atoms are disordered over two
positions. Therefore they were refined isotropically with O—H = 0.84 Å and
a site-occupation factor of 0.5, and were allowed to rotate about the C—O
bond.
In (IIa), the H atoms of both methyl groups are disordered over two
positions, with site-occupation factors of 0.61 (2) and 0.70 (2) for the major
occupied orientations. Owing to the large β value of 118.86 (1)° and
correlation coefficients larger than 0.5 for several U13/U11
and U13/U33 pairs the nonstandard space group
I2/a was used instead of C2/c.
Ab initio energy calculations were performed with geometry optimization
using GAUSSIAN (Frisch et al., 2004) at the
B3LYP/6–31++G(d,p)
level starting from the crystal structures and conformations derived thereof.
For all compounds, data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008) and XP (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).
(Ia) 4-hydroxypyridine-2,6-dicarboxylic acid methanol monosolvate
top
Crystal data top
C7H5NO5·CH4O | F(000) = 448 |
Mr = 215.16 | Dx = 1.557 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 12422 reflections |
a = 5.8256 (5) Å | θ = 3.2–25.9° |
b = 12.5648 (12) Å | µ = 0.14 mm−1 |
c = 12.7464 (11) Å | T = 173 K |
β = 100.303 (7)° | Block, yellow |
V = 917.96 (14) Å3 | 0.52 × 0.50 × 0.44 mm |
Z = 4 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1491 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.043 |
Graphite monochromator | θmax = 25.6°, θmin = 3.2° |
ω scans | h = −5→7 |
8713 measured reflections | k = −15→15 |
1712 independent reflections | l = −15→15 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0521P)2 + 0.3671P] where P = (Fo2 + 2Fc2)/3 |
1712 reflections | (Δ/σ)max < 0.001 |
153 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
Crystal data top
C7H5NO5·CH4O | V = 917.96 (14) Å3 |
Mr = 215.16 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 5.8256 (5) Å | µ = 0.14 mm−1 |
b = 12.5648 (12) Å | T = 173 K |
c = 12.7464 (11) Å | 0.52 × 0.50 × 0.44 mm |
β = 100.303 (7)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1491 reflections with I > 2σ(I) |
8713 measured reflections | Rint = 0.043 |
1712 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.18 e Å−3 |
1712 reflections | Δρmin = −0.26 e Å−3 |
153 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.6359 (2) | 0.63208 (10) | 0.45800 (9) | 0.0174 (3) | |
H1 | 0.760 (4) | 0.6038 (17) | 0.4439 (16) | 0.037 (5)* | |
C2 | 0.4981 (2) | 0.68738 (11) | 0.37964 (11) | 0.0170 (3) | |
C3 | 0.2995 (3) | 0.73542 (11) | 0.39842 (11) | 0.0183 (3) | |
H3 | 0.2024 | 0.7731 | 0.3428 | 0.022* | |
C4 | 0.2381 (3) | 0.72914 (11) | 0.50048 (11) | 0.0181 (3) | |
C5 | 0.3849 (3) | 0.66925 (11) | 0.58014 (11) | 0.0182 (3) | |
H5 | 0.3469 | 0.6617 | 0.6492 | 0.022* | |
C6 | 0.5812 (3) | 0.62263 (11) | 0.55661 (11) | 0.0171 (3) | |
C21 | 0.5859 (3) | 0.69354 (11) | 0.27464 (11) | 0.0174 (3) | |
O21 | 0.44112 (19) | 0.72881 (9) | 0.19653 (8) | 0.0246 (3) | |
O22 | 0.79039 (19) | 0.66493 (9) | 0.27627 (8) | 0.0252 (3) | |
O41 | 0.04962 (18) | 0.77874 (9) | 0.51697 (8) | 0.0219 (3) | |
H41 | 0.021 (5) | 0.774 (2) | 0.597 (2) | 0.064 (7)* | |
C61 | 0.7573 (3) | 0.56000 (11) | 0.63437 (11) | 0.0187 (3) | |
O61 | 0.9366 (2) | 0.52961 (9) | 0.60839 (8) | 0.0266 (3) | |
O62 | 0.69101 (19) | 0.54420 (9) | 0.72637 (8) | 0.0230 (3) | |
H62 | 0.825 (5) | 0.505 (2) | 0.775 (2) | 0.065 (7)* | |
C1M | 1.1971 (3) | 0.52753 (15) | 0.89663 (16) | 0.0395 (5) | |
H1M1 | 1.1487 | 0.5720 | 0.9519 | 0.059* | |
H1M2 | 1.2307 | 0.5728 | 0.8386 | 0.059* | |
H1M3 | 1.3374 | 0.4875 | 0.9273 | 0.059* | |
O1M | 1.0126 (2) | 0.45452 (9) | 0.85558 (9) | 0.0273 (3) | |
H1M | 1.077 (4) | 0.403 (2) | 0.8130 (19) | 0.055 (7)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0171 (7) | 0.0204 (6) | 0.0148 (6) | −0.0007 (5) | 0.0028 (5) | −0.0001 (5) |
C2 | 0.0191 (7) | 0.0175 (7) | 0.0138 (7) | −0.0041 (5) | 0.0009 (5) | −0.0003 (5) |
C3 | 0.0192 (7) | 0.0215 (7) | 0.0138 (7) | −0.0011 (6) | 0.0013 (6) | 0.0016 (5) |
C4 | 0.0176 (7) | 0.0205 (7) | 0.0157 (7) | −0.0039 (6) | 0.0017 (6) | −0.0024 (5) |
C5 | 0.0205 (7) | 0.0226 (7) | 0.0113 (6) | −0.0037 (6) | 0.0028 (5) | −0.0008 (5) |
C6 | 0.0189 (7) | 0.0181 (7) | 0.0137 (7) | −0.0045 (6) | 0.0010 (5) | −0.0008 (5) |
C21 | 0.0194 (7) | 0.0185 (7) | 0.0151 (7) | −0.0003 (5) | 0.0049 (5) | −0.0004 (5) |
O21 | 0.0230 (6) | 0.0378 (6) | 0.0138 (5) | 0.0073 (5) | 0.0052 (4) | 0.0057 (4) |
O22 | 0.0214 (6) | 0.0361 (6) | 0.0192 (5) | 0.0071 (5) | 0.0064 (4) | 0.0016 (5) |
O41 | 0.0189 (6) | 0.0321 (6) | 0.0153 (5) | 0.0037 (4) | 0.0046 (4) | −0.0001 (4) |
C61 | 0.0211 (8) | 0.0196 (7) | 0.0147 (7) | −0.0025 (6) | 0.0015 (6) | −0.0013 (5) |
O61 | 0.0271 (6) | 0.0336 (6) | 0.0198 (6) | 0.0080 (5) | 0.0057 (5) | 0.0031 (4) |
O62 | 0.0239 (6) | 0.0310 (6) | 0.0138 (5) | 0.0027 (5) | 0.0025 (4) | 0.0046 (4) |
C1M | 0.0359 (10) | 0.0373 (10) | 0.0412 (10) | 0.0040 (8) | −0.0044 (8) | −0.0034 (8) |
O1M | 0.0280 (6) | 0.0334 (6) | 0.0197 (6) | 0.0064 (5) | 0.0020 (5) | −0.0002 (5) |
Geometric parameters (Å, º) top
N1—C2 | 1.3556 (19) | C21—O22 | 1.2409 (19) |
N1—C6 | 1.3559 (19) | C21—O21 | 1.2644 (18) |
N1—H1 | 0.86 (2) | O41—H41 | 1.07 (3) |
C2—C3 | 1.364 (2) | C61—O61 | 1.2124 (19) |
C2—C21 | 1.5179 (19) | C61—O62 | 1.3136 (18) |
C3—C4 | 1.412 (2) | O62—H62 | 1.03 (3) |
C3—H3 | 0.9500 | C1M—O1M | 1.439 (2) |
C4—O41 | 1.3118 (18) | C1M—H1M1 | 0.9800 |
C4—C5 | 1.421 (2) | C1M—H1M2 | 0.9800 |
C5—C6 | 1.365 (2) | C1M—H1M3 | 0.9800 |
C5—H5 | 0.9500 | O1M—H1M | 0.97 (3) |
C6—C61 | 1.513 (2) | | |
| | | |
C2—N1—C6 | 121.45 (13) | C5—C6—C61 | 125.13 (13) |
C2—N1—H1 | 118.1 (14) | O22—C21—O21 | 128.17 (14) |
C6—N1—H1 | 120.4 (14) | O22—C21—C2 | 116.38 (12) |
N1—C2—C3 | 120.45 (13) | O21—C21—C2 | 115.45 (12) |
N1—C2—C21 | 115.30 (13) | C4—O41—H41 | 114.1 (14) |
C3—C2—C21 | 124.23 (13) | O61—C61—O62 | 126.96 (13) |
C2—C3—C4 | 119.98 (13) | O61—C61—C6 | 120.06 (13) |
C2—C3—H3 | 120.0 | O62—C61—C6 | 112.98 (13) |
C4—C3—H3 | 120.0 | C61—O62—H62 | 107.2 (15) |
O41—C4—C3 | 118.57 (13) | O1M—C1M—H1M1 | 109.5 |
O41—C4—C5 | 123.47 (13) | O1M—C1M—H1M2 | 109.5 |
C3—C4—C5 | 117.96 (14) | H1M1—C1M—H1M2 | 109.5 |
C6—C5—C4 | 119.42 (13) | O1M—C1M—H1M3 | 109.5 |
C6—C5—H5 | 120.3 | H1M1—C1M—H1M3 | 109.5 |
C4—C5—H5 | 120.3 | H1M2—C1M—H1M3 | 109.5 |
N1—C6—C5 | 120.72 (13) | C1M—O1M—H1M | 107.0 (14) |
N1—C6—C61 | 114.14 (13) | | |
| | | |
C6—N1—C2—C3 | 0.1 (2) | C4—C5—C6—N1 | −0.6 (2) |
C6—N1—C2—C21 | 178.30 (12) | C4—C5—C6—C61 | 177.79 (13) |
N1—C2—C3—C4 | 1.0 (2) | N1—C2—C21—O22 | −12.50 (19) |
C21—C2—C3—C4 | −177.04 (13) | C3—C2—C21—O22 | 165.63 (14) |
C2—C3—C4—O41 | 178.04 (13) | N1—C2—C21—O21 | 168.44 (13) |
C2—C3—C4—C5 | −1.9 (2) | C3—C2—C21—O21 | −13.4 (2) |
O41—C4—C5—C6 | −178.22 (13) | N1—C6—C61—O61 | 5.00 (19) |
C3—C4—C5—C6 | 1.7 (2) | C5—C6—C61—O61 | −173.51 (14) |
C2—N1—C6—C5 | −0.3 (2) | N1—C6—C61—O62 | −174.55 (12) |
C2—N1—C6—C61 | −178.86 (12) | C5—C6—C61—O62 | 6.9 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O61i | 0.86 (2) | 2.61 (2) | 3.4354 (18) | 163.7 (19) |
O41—H41···O21ii | 1.07 (3) | 1.43 (3) | 2.4827 (14) | 170 (2) |
O62—H62···O1M | 1.03 (3) | 1.50 (3) | 2.5274 (15) | 174 (3) |
O1M—H1M···O22i | 0.97 (3) | 1.71 (3) | 2.6617 (16) | 167 (2) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x−1/2, −y+3/2, z+1/2. |
(Ib) dimethylammonium 6-carboxy-4-hydroxypyridine-2-carboxylate
top
Crystal data top
C2H8N+·C7H4NO5− | Z = 4 |
Mr = 228.20 | F(000) = 480 |
Triclinic, P1 | Dx = 1.449 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.3688 (8) Å | Cell parameters from 11295 reflections |
b = 11.1416 (12) Å | θ = 3.0–25.7° |
c = 14.3584 (15) Å | µ = 0.12 mm−1 |
α = 69.025 (8)° | T = 173 K |
β = 79.438 (9)° | Block, colourless |
γ = 72.455 (9)° | 0.42 × 0.40 × 0.40 mm |
V = 1045.74 (19) Å3 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 3102 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.066 |
Graphite monochromator | θmax = 25.5°, θmin = 3.0° |
ω scans | h = −7→8 |
10298 measured reflections | k = −13→13 |
3884 independent reflections | l = −17→17 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0746P)2] where P = (Fo2 + 2Fc2)/3 |
3884 reflections | (Δ/σ)max < 0.001 |
325 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
Crystal data top
C2H8N+·C7H4NO5− | γ = 72.455 (9)° |
Mr = 228.20 | V = 1045.74 (19) Å3 |
Triclinic, P1 | Z = 4 |
a = 7.3688 (8) Å | Mo Kα radiation |
b = 11.1416 (12) Å | µ = 0.12 mm−1 |
c = 14.3584 (15) Å | T = 173 K |
α = 69.025 (8)° | 0.42 × 0.40 × 0.40 mm |
β = 79.438 (9)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 3102 reflections with I > 2σ(I) |
10298 measured reflections | Rint = 0.066 |
3884 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.30 e Å−3 |
3884 reflections | Δρmin = −0.24 e Å−3 |
325 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 1.07354 (19) | 0.18057 (13) | 0.69845 (10) | 0.0147 (3) | |
C2 | 1.0139 (2) | 0.28878 (15) | 0.72811 (11) | 0.0144 (3) | |
C3 | 1.0279 (2) | 0.28679 (15) | 0.82396 (12) | 0.0175 (3) | |
H3 | 0.9845 | 0.3665 | 0.8407 | 0.021* | |
C4 | 1.1065 (2) | 0.16621 (16) | 0.89543 (12) | 0.0176 (3) | |
C5 | 1.1719 (2) | 0.05255 (15) | 0.86574 (12) | 0.0172 (3) | |
H5 | 1.2275 | −0.0314 | 0.9115 | 0.021* | |
C6 | 1.1536 (2) | 0.06554 (15) | 0.76771 (12) | 0.0153 (3) | |
C21 | 0.9266 (2) | 0.42058 (15) | 0.65175 (11) | 0.0149 (3) | |
O21 | 0.92447 (18) | 0.52509 (11) | 0.66324 (9) | 0.0219 (3) | |
O22 | 0.85769 (17) | 0.41137 (11) | 0.57818 (8) | 0.0192 (3) | |
H22 | 0.767 (5) | 0.522 (4) | 0.526 (3) | 0.098 (12)* | |
O41 | 1.1166 (2) | 0.16544 (12) | 0.98795 (9) | 0.0270 (3) | |
H41 | 1.190 (5) | 0.079 (3) | 1.030 (2) | 0.077 (9)* | |
C61 | 1.2267 (2) | −0.05173 (15) | 0.72877 (12) | 0.0190 (4) | |
O61 | 1.2311 (2) | −0.03798 (12) | 0.64113 (10) | 0.0376 (4) | |
O62 | 1.2869 (2) | −0.16665 (11) | 0.79828 (9) | 0.0253 (3) | |
H62 | 1.327 (5) | −0.242 (3) | 0.767 (3) | 0.089 (10)* | |
N1' | 0.4435 (2) | 0.69879 (13) | 0.22462 (10) | 0.0153 (3) | |
H1' | 0.399 (3) | 0.711 (2) | 0.1687 (16) | 0.024 (5)* | |
C2' | 0.4312 (2) | 0.80344 (15) | 0.25502 (12) | 0.0142 (3) | |
C3' | 0.5037 (2) | 0.78274 (15) | 0.34220 (11) | 0.0149 (3) | |
H3' | 0.4905 | 0.8560 | 0.3643 | 0.018* | |
C4' | 0.5991 (2) | 0.65216 (15) | 0.40032 (11) | 0.0149 (3) | |
C5' | 0.6102 (2) | 0.54665 (15) | 0.36362 (12) | 0.0166 (3) | |
H5' | 0.6732 | 0.4580 | 0.3995 | 0.020* | |
C6' | 0.5312 (2) | 0.57165 (15) | 0.27748 (12) | 0.0154 (3) | |
C21' | 0.3387 (2) | 0.94067 (15) | 0.18491 (12) | 0.0178 (3) | |
O21' | 0.3214 (2) | 1.03734 (11) | 0.21314 (9) | 0.0269 (3) | |
O22' | 0.29196 (19) | 0.93962 (11) | 0.10517 (9) | 0.0248 (3) | |
O41' | 0.67307 (17) | 0.63405 (11) | 0.48060 (8) | 0.0198 (3) | |
C61' | 0.5305 (2) | 0.46417 (15) | 0.23593 (12) | 0.0183 (3) | |
O61' | 0.42720 (19) | 0.49618 (11) | 0.16680 (9) | 0.0246 (3) | |
O62' | 0.6373 (2) | 0.35127 (12) | 0.27677 (10) | 0.0325 (3) | |
C1Y | 0.9274 (3) | 0.1873 (2) | 0.47622 (18) | 0.0404 (6) | |
H1Y1 | 0.9031 | 0.2087 | 0.4065 | 0.061* | |
H1Y2 | 0.8229 | 0.2415 | 0.5085 | 0.061* | |
H1Y3 | 0.9356 | 0.0929 | 0.5119 | 0.061* | |
N2Y | 1.1090 (2) | 0.21580 (14) | 0.47896 (11) | 0.0223 (3) | |
H2Y1 | 1.132 (3) | 0.198 (2) | 0.5439 (18) | 0.032 (6)* | |
H2Y2 | 1.097 (3) | 0.309 (2) | 0.4466 (18) | 0.039 (6)* | |
C3Y | 1.2769 (3) | 0.14836 (19) | 0.42541 (15) | 0.0360 (5) | |
H3Y1 | 1.3070 | 0.0523 | 0.4605 | 0.054* | |
H3Y2 | 1.3866 | 0.1820 | 0.4232 | 0.054* | |
H3Y3 | 1.2482 | 0.1661 | 0.3570 | 0.054* | |
C1Z | 0.3843 (4) | 0.3340 (2) | 0.02766 (15) | 0.0401 (5) | |
H1Z1 | 0.3347 | 0.2929 | −0.0088 | 0.060* | |
H1Z2 | 0.5226 | 0.2964 | 0.0300 | 0.060* | |
H1Z3 | 0.3573 | 0.4302 | −0.0065 | 0.060* | |
N2Z | 0.2908 (2) | 0.30742 (14) | 0.13127 (11) | 0.0243 (3) | |
H2Z1 | 0.344 (3) | 0.350 (2) | 0.1637 (16) | 0.031 (5)* | |
H2Z2 | 0.317 (4) | 0.213 (3) | 0.1651 (18) | 0.046 (7)* | |
C3Z | 0.0795 (3) | 0.3568 (2) | 0.13578 (17) | 0.0358 (5) | |
H3Z1 | 0.0439 | 0.4517 | 0.0971 | 0.054* | |
H3Z2 | 0.0280 | 0.3440 | 0.2056 | 0.054* | |
H3Z3 | 0.0271 | 0.3074 | 0.1077 | 0.054* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0160 (7) | 0.0110 (6) | 0.0150 (6) | −0.0018 (5) | −0.0034 (5) | −0.0019 (5) |
C2 | 0.0124 (8) | 0.0122 (7) | 0.0162 (8) | −0.0020 (6) | −0.0018 (6) | −0.0025 (6) |
C3 | 0.0215 (9) | 0.0108 (7) | 0.0183 (8) | −0.0002 (6) | −0.0044 (6) | −0.0044 (6) |
C4 | 0.0205 (9) | 0.0160 (8) | 0.0148 (8) | −0.0026 (7) | −0.0053 (6) | −0.0033 (6) |
C5 | 0.0190 (8) | 0.0109 (7) | 0.0187 (8) | −0.0010 (6) | −0.0062 (6) | −0.0013 (6) |
C6 | 0.0159 (8) | 0.0105 (7) | 0.0176 (8) | −0.0012 (6) | −0.0033 (6) | −0.0032 (6) |
C21 | 0.0124 (8) | 0.0142 (8) | 0.0132 (8) | 0.0004 (6) | −0.0004 (6) | −0.0020 (6) |
O21 | 0.0306 (7) | 0.0117 (5) | 0.0200 (6) | −0.0009 (5) | −0.0080 (5) | −0.0022 (4) |
O22 | 0.0221 (6) | 0.0151 (5) | 0.0177 (6) | −0.0003 (5) | −0.0078 (5) | −0.0028 (5) |
O41 | 0.0472 (9) | 0.0154 (6) | 0.0159 (6) | 0.0019 (6) | −0.0138 (6) | −0.0050 (5) |
C61 | 0.0225 (9) | 0.0132 (8) | 0.0189 (8) | 0.0002 (7) | −0.0051 (7) | −0.0048 (6) |
O61 | 0.0678 (11) | 0.0175 (6) | 0.0208 (7) | 0.0062 (7) | −0.0122 (7) | −0.0085 (5) |
O62 | 0.0413 (8) | 0.0095 (5) | 0.0215 (6) | 0.0017 (5) | −0.0105 (6) | −0.0038 (5) |
N1' | 0.0173 (7) | 0.0126 (6) | 0.0149 (7) | −0.0012 (5) | −0.0041 (5) | −0.0040 (5) |
C2' | 0.0135 (8) | 0.0103 (7) | 0.0164 (8) | −0.0013 (6) | −0.0016 (6) | −0.0028 (6) |
C3' | 0.0147 (8) | 0.0118 (7) | 0.0170 (8) | −0.0008 (6) | −0.0019 (6) | −0.0050 (6) |
C4' | 0.0119 (8) | 0.0145 (7) | 0.0153 (7) | −0.0020 (6) | −0.0015 (6) | −0.0024 (6) |
C5' | 0.0170 (8) | 0.0102 (7) | 0.0192 (8) | 0.0003 (6) | −0.0030 (6) | −0.0031 (6) |
C6' | 0.0130 (8) | 0.0121 (7) | 0.0187 (8) | −0.0009 (6) | −0.0006 (6) | −0.0046 (6) |
C21' | 0.0195 (9) | 0.0121 (7) | 0.0182 (8) | −0.0009 (6) | −0.0044 (7) | −0.0018 (6) |
O21' | 0.0407 (8) | 0.0109 (5) | 0.0264 (7) | −0.0010 (5) | −0.0112 (6) | −0.0036 (5) |
O22' | 0.0339 (8) | 0.0168 (6) | 0.0204 (6) | −0.0006 (5) | −0.0122 (5) | −0.0022 (5) |
O41' | 0.0243 (7) | 0.0145 (5) | 0.0181 (6) | −0.0004 (5) | −0.0103 (5) | −0.0022 (4) |
C61' | 0.0222 (9) | 0.0131 (8) | 0.0186 (8) | −0.0035 (7) | 0.0000 (7) | −0.0056 (6) |
O61' | 0.0325 (7) | 0.0203 (6) | 0.0238 (6) | −0.0067 (5) | −0.0082 (5) | −0.0076 (5) |
O62' | 0.0446 (9) | 0.0146 (6) | 0.0384 (8) | 0.0071 (6) | −0.0193 (6) | −0.0134 (5) |
C1Y | 0.0389 (13) | 0.0246 (10) | 0.0634 (15) | −0.0008 (9) | −0.0247 (11) | −0.0168 (10) |
N2Y | 0.0335 (9) | 0.0168 (7) | 0.0170 (7) | −0.0069 (6) | −0.0052 (6) | −0.0040 (6) |
C3Y | 0.0445 (13) | 0.0268 (10) | 0.0291 (10) | 0.0023 (9) | 0.0001 (9) | −0.0110 (8) |
C1Z | 0.0496 (14) | 0.0513 (13) | 0.0254 (10) | −0.0269 (11) | −0.0006 (9) | −0.0091 (9) |
N2Z | 0.0344 (9) | 0.0157 (7) | 0.0226 (8) | −0.0072 (7) | −0.0075 (7) | −0.0029 (6) |
C3Z | 0.0334 (11) | 0.0332 (10) | 0.0451 (12) | 0.0010 (9) | −0.0112 (9) | −0.0218 (9) |
Geometric parameters (Å, º) top
N1—C2 | 1.344 (2) | C5'—H5' | 0.9500 |
N1—C6 | 1.351 (2) | C6'—C61' | 1.519 (2) |
C2—C3 | 1.391 (2) | C21'—O21' | 1.246 (2) |
C2—C21 | 1.520 (2) | C21'—O22' | 1.2594 (19) |
C3—C4 | 1.398 (2) | O41'—H22 | 1.24 (4) |
C3—H3 | 0.9500 | C61'—O61' | 1.246 (2) |
C4—O41 | 1.3410 (19) | C61'—O62' | 1.261 (2) |
C4—C5 | 1.400 (2) | C1Y—N2Y | 1.475 (3) |
C5—C6 | 1.390 (2) | C1Y—H1Y1 | 0.9800 |
C5—H5 | 0.9500 | C1Y—H1Y2 | 0.9800 |
C6—C61 | 1.516 (2) | C1Y—H1Y3 | 0.9800 |
C21—O21 | 1.2285 (19) | N2Y—C3Y | 1.480 (3) |
C21—O22 | 1.2998 (18) | N2Y—H2Y1 | 0.92 (2) |
O22—H22 | 1.24 (4) | N2Y—H2Y2 | 0.96 (2) |
O41—H41 | 0.99 (3) | C3Y—H3Y1 | 0.9800 |
C61—O61 | 1.208 (2) | C3Y—H3Y2 | 0.9800 |
C61—O62 | 1.318 (2) | C3Y—H3Y3 | 0.9800 |
O62—H62 | 1.03 (3) | C1Z—N2Z | 1.486 (3) |
N1'—C2' | 1.3580 (19) | C1Z—H1Z1 | 0.9800 |
N1'—C6' | 1.363 (2) | C1Z—H1Z2 | 0.9800 |
N1'—H1' | 0.87 (2) | C1Z—H1Z3 | 0.9800 |
C2'—C3' | 1.368 (2) | N2Z—C3Z | 1.484 (3) |
C2'—C21' | 1.529 (2) | N2Z—H2Z1 | 0.96 (2) |
C3'—C4' | 1.427 (2) | N2Z—H2Z2 | 0.96 (3) |
C3'—H3' | 0.9500 | C3Z—H3Z1 | 0.9800 |
C4'—O41' | 1.2899 (18) | C3Z—H3Z2 | 0.9800 |
C4'—C5' | 1.427 (2) | C3Z—H3Z3 | 0.9800 |
C5'—C6' | 1.366 (2) | | |
| | | |
C2—N1—C6 | 116.01 (13) | O21'—C21'—O22' | 128.95 (14) |
N1—C2—C3 | 123.88 (14) | O21'—C21'—C2' | 116.58 (13) |
N1—C2—C21 | 117.60 (13) | O22'—C21'—C2' | 114.46 (13) |
C3—C2—C21 | 118.52 (13) | C4'—O41'—H22 | 119.5 (15) |
C2—C3—C4 | 119.30 (14) | O61'—C61'—O62' | 127.66 (14) |
C2—C3—H3 | 120.4 | O61'—C61'—C6' | 117.61 (14) |
C4—C3—H3 | 120.4 | O62'—C61'—C6' | 114.73 (14) |
O41—C4—C3 | 118.66 (14) | N2Y—C1Y—H1Y1 | 109.5 |
O41—C4—C5 | 123.58 (14) | N2Y—C1Y—H1Y2 | 109.5 |
C3—C4—C5 | 117.76 (14) | H1Y1—C1Y—H1Y2 | 109.5 |
C6—C5—C4 | 118.42 (14) | N2Y—C1Y—H1Y3 | 109.5 |
C6—C5—H5 | 120.8 | H1Y1—C1Y—H1Y3 | 109.5 |
C4—C5—H5 | 120.8 | H1Y2—C1Y—H1Y3 | 109.5 |
N1—C6—C5 | 124.59 (14) | C1Y—N2Y—C3Y | 115.05 (16) |
N1—C6—C61 | 113.74 (13) | C1Y—N2Y—H2Y1 | 110.2 (14) |
C5—C6—C61 | 121.66 (14) | C3Y—N2Y—H2Y1 | 110.8 (14) |
O21—C21—O22 | 125.28 (14) | C1Y—N2Y—H2Y2 | 108.8 (14) |
O21—C21—C2 | 119.51 (13) | C3Y—N2Y—H2Y2 | 105.5 (15) |
O22—C21—C2 | 115.21 (13) | H2Y1—N2Y—H2Y2 | 106.0 (18) |
C21—O22—H22 | 111.5 (15) | N2Y—C3Y—H3Y1 | 109.5 |
C4—O41—H41 | 112.8 (18) | N2Y—C3Y—H3Y2 | 109.5 |
O61—C61—O62 | 124.21 (14) | H3Y1—C3Y—H3Y2 | 109.5 |
O61—C61—C6 | 121.75 (14) | N2Y—C3Y—H3Y3 | 109.5 |
O62—C61—C6 | 114.03 (13) | H3Y1—C3Y—H3Y3 | 109.5 |
C61—O62—H62 | 109.8 (19) | H3Y2—C3Y—H3Y3 | 109.5 |
C2'—N1'—C6' | 121.91 (13) | N2Z—C1Z—H1Z1 | 109.5 |
C2'—N1'—H1' | 120.8 (13) | N2Z—C1Z—H1Z2 | 109.5 |
C6'—N1'—H1' | 117.2 (13) | H1Z1—C1Z—H1Z2 | 109.5 |
N1'—C2'—C3' | 120.11 (14) | N2Z—C1Z—H1Z3 | 109.5 |
N1'—C2'—C21' | 115.84 (13) | H1Z1—C1Z—H1Z3 | 109.5 |
C3'—C2'—C21' | 124.03 (13) | H1Z2—C1Z—H1Z3 | 109.5 |
C2'—C3'—C4' | 120.64 (13) | C3Z—N2Z—C1Z | 113.65 (16) |
C2'—C3'—H3' | 119.7 | C3Z—N2Z—H2Z1 | 110.5 (13) |
C4'—C3'—H3' | 119.7 | C1Z—N2Z—H2Z1 | 106.3 (13) |
O41'—C4'—C5' | 123.14 (14) | C3Z—N2Z—H2Z2 | 105.7 (15) |
O41'—C4'—C3' | 120.28 (13) | C1Z—N2Z—H2Z2 | 109.8 (15) |
C5'—C4'—C3' | 116.57 (13) | H2Z1—N2Z—H2Z2 | 111.0 (19) |
C6'—C5'—C4' | 120.72 (14) | N2Z—C3Z—H3Z1 | 109.5 |
C6'—C5'—H5' | 119.6 | N2Z—C3Z—H3Z2 | 109.5 |
C4'—C5'—H5' | 119.6 | H3Z1—C3Z—H3Z2 | 109.5 |
N1'—C6'—C5' | 120.01 (13) | N2Z—C3Z—H3Z3 | 109.5 |
N1'—C6'—C61' | 116.22 (13) | H3Z1—C3Z—H3Z3 | 109.5 |
C5'—C6'—C61' | 123.75 (14) | H3Z2—C3Z—H3Z3 | 109.5 |
| | | |
C6—N1—C2—C3 | −1.1 (2) | C6'—N1'—C2'—C3' | −1.6 (2) |
C6—N1—C2—C21 | 178.83 (13) | C6'—N1'—C2'—C21' | 176.68 (14) |
N1—C2—C3—C4 | −0.6 (3) | N1'—C2'—C3'—C4' | 2.3 (2) |
C21—C2—C3—C4 | 179.49 (15) | C21'—C2'—C3'—C4' | −175.86 (15) |
C2—C3—C4—O41 | −179.07 (15) | C2'—C3'—C4'—O41' | 177.55 (15) |
C2—C3—C4—C5 | 1.4 (3) | C2'—C3'—C4'—C5' | −1.3 (2) |
O41—C4—C5—C6 | 179.93 (16) | O41'—C4'—C5'—C6' | −179.23 (15) |
C3—C4—C5—C6 | −0.6 (2) | C3'—C4'—C5'—C6' | −0.5 (2) |
C2—N1—C6—C5 | 2.0 (2) | C2'—N1'—C6'—C5' | −0.1 (2) |
C2—N1—C6—C61 | −177.23 (14) | C2'—N1'—C6'—C61' | 178.70 (15) |
C4—C5—C6—N1 | −1.2 (3) | C4'—C5'—C6'—N1' | 1.1 (3) |
C4—C5—C6—C61 | 177.98 (16) | C4'—C5'—C6'—C61' | −177.57 (15) |
N1—C2—C21—O21 | −157.69 (15) | N1'—C2'—C21'—O21' | 178.02 (15) |
C3—C2—C21—O21 | 22.2 (2) | C3'—C2'—C21'—O21' | −3.7 (3) |
N1—C2—C21—O22 | 22.7 (2) | N1'—C2'—C21'—O22' | −2.7 (2) |
C3—C2—C21—O22 | −157.35 (15) | C3'—C2'—C21'—O22' | 175.56 (16) |
N1—C6—C61—O61 | 7.9 (3) | N1'—C6'—C61'—O61' | −10.6 (2) |
C5—C6—C61—O61 | −171.34 (18) | C5'—C6'—C61'—O61' | 168.19 (16) |
N1—C6—C61—O62 | −173.35 (14) | N1'—C6'—C61'—O62' | 169.38 (15) |
C5—C6—C61—O62 | 7.4 (2) | C5'—C6'—C61'—O62' | −11.9 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O41′—H22···O22 | 1.24 (4) | 1.24 (4) | 2.4788 (15) | 176 (3) |
O41—H41···O22′i | 0.99 (3) | 1.59 (3) | 2.5765 (16) | 175 (3) |
O62—H62···O62′ii | 1.03 (3) | 1.50 (3) | 2.5255 (16) | 174 (3) |
N1′—H1′···O22′ | 0.87 (2) | 2.31 (2) | 2.6437 (17) | 102.8 (15) |
N1′—H1′···O61′ | 0.87 (2) | 2.348 (19) | 2.7095 (17) | 105.0 (15) |
N2Y—H2Y1···N1 | 0.92 (2) | 2.13 (2) | 3.005 (2) | 159 (2) |
N2Y—H2Y2···O21iii | 0.96 (2) | 1.94 (3) | 2.8459 (19) | 157.1 (19) |
N2Z—H2Z2···O21′iv | 0.96 (3) | 1.82 (3) | 2.7645 (19) | 167 (2) |
N2Z—H2Z1···O61′ | 0.96 (2) | 1.93 (2) | 2.8151 (19) | 152.5 (18) |
Symmetry codes: (i) x+1, y−1, z+1; (ii) −x+2, −y, −z+1; (iii) −x+2, −y+1, −z+1; (iv) x, y−1, z. |
(Ic) 4-hydroxypyridine-2,6-dicarboxylic acid dimethyl sulfoxide monosolvate
top
Crystal data top
C7H5NO5·C2H6OS | Z = 2 |
Mr = 261.25 | F(000) = 272 |
Triclinic, P1 | Dx = 1.556 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.7460 (4) Å | Cell parameters from 17750 reflections |
b = 10.4917 (9) Å | θ = 3.6–27.9° |
c = 11.9787 (11) Å | µ = 0.31 mm−1 |
α = 103.592 (7)° | T = 173 K |
β = 97.606 (7)° | Plate, colourless |
γ = 101.651 (7)° | 0.36 × 0.28 × 0.22 mm |
V = 557.59 (9) Å3 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2552 independent reflections |
Radiation source: fine-focus sealed tube | 2458 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
ω scans | θmax = 27.6°, θmin = 3.6° |
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) | h = −6→6 |
Tmin = 0.897, Tmax = 0.936 | k = −13→13 |
11141 measured reflections | l = −15→14 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.028 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.078 | w = 1/[σ2(Fo2) + (0.045P)2 + 0.1667P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
2552 reflections | Δρmax = 0.39 e Å−3 |
169 parameters | Δρmin = −0.32 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.086 (9) |
Crystal data top
C7H5NO5·C2H6OS | γ = 101.651 (7)° |
Mr = 261.25 | V = 557.59 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 4.7460 (4) Å | Mo Kα radiation |
b = 10.4917 (9) Å | µ = 0.31 mm−1 |
c = 11.9787 (11) Å | T = 173 K |
α = 103.592 (7)° | 0.36 × 0.28 × 0.22 mm |
β = 97.606 (7)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2552 independent reflections |
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) | 2458 reflections with I > 2σ(I) |
Tmin = 0.897, Tmax = 0.936 | Rint = 0.038 |
11141 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.028 | 0 restraints |
wR(F2) = 0.078 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.39 e Å−3 |
2552 reflections | Δρmin = −0.32 e Å−3 |
169 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.4687 (2) | 0.78021 (9) | 0.73731 (8) | 0.01689 (19) | |
H1 | 0.441 (4) | 0.8353 (18) | 0.7014 (15) | 0.035 (4)* | |
C2 | 0.3755 (2) | 0.78845 (10) | 0.84006 (9) | 0.0164 (2) | |
C3 | 0.4164 (2) | 0.69729 (11) | 0.90262 (9) | 0.0183 (2) | |
H3 | 0.3517 | 0.7037 | 0.9750 | 0.022* | |
C4 | 0.5572 (2) | 0.59265 (11) | 0.85821 (9) | 0.0184 (2) | |
C5 | 0.6547 (2) | 0.58953 (11) | 0.74974 (9) | 0.0181 (2) | |
H5 | 0.7520 | 0.5226 | 0.7180 | 0.022* | |
C6 | 0.6069 (2) | 0.68340 (10) | 0.69208 (9) | 0.0164 (2) | |
C21 | 0.2199 (2) | 0.90220 (11) | 0.87362 (10) | 0.0190 (2) | |
O21 | 0.1828 (2) | 0.96876 (10) | 0.80321 (8) | 0.0312 (2) | |
O22 | 0.13897 (19) | 0.91346 (8) | 0.97273 (7) | 0.0247 (2) | |
H22 | 0.0514 | 0.9760 | 0.9851 | 0.051 (11)* | 0.50 |
O41 | 0.5992 (2) | 0.50148 (9) | 0.91080 (7) | 0.0270 (2) | |
H41 | 0.5245 | 0.5119 | 0.9711 | 0.042 (10)* | 0.50 |
C61 | 0.6967 (2) | 0.69305 (11) | 0.57736 (9) | 0.0184 (2) | |
O61 | 0.6429 (2) | 0.78174 (9) | 0.53434 (7) | 0.0273 (2) | |
O62 | 0.8340 (2) | 0.60150 (9) | 0.53520 (7) | 0.0277 (2) | |
H62 | 0.875 (5) | 0.617 (2) | 0.464 (2) | 0.068 (7)* | |
S1 | 0.90608 (6) | 0.74888 (3) | 0.29997 (2) | 0.01996 (11) | |
O1S | 0.9724 (2) | 0.62973 (8) | 0.34301 (7) | 0.0256 (2) | |
C1S | 1.1706 (3) | 0.89513 (12) | 0.39007 (11) | 0.0305 (3) | |
H1S1 | 1.1381 | 0.9111 | 0.4708 | 0.046* | |
H1S2 | 1.1513 | 0.9736 | 0.3613 | 0.046* | |
H1S3 | 1.3679 | 0.8810 | 0.3876 | 0.046* | |
C2S | 1.0555 (3) | 0.73813 (13) | 0.16945 (11) | 0.0277 (3) | |
H2S1 | 1.2636 | 0.7390 | 0.1870 | 0.042* | |
H2S2 | 1.0342 | 0.8154 | 0.1393 | 0.042* | |
H2S3 | 0.9507 | 0.6541 | 0.1106 | 0.042* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0229 (4) | 0.0171 (4) | 0.0166 (4) | 0.0107 (3) | 0.0078 (3) | 0.0088 (3) |
C2 | 0.0185 (5) | 0.0169 (5) | 0.0171 (5) | 0.0087 (4) | 0.0067 (4) | 0.0049 (4) |
C3 | 0.0245 (5) | 0.0199 (5) | 0.0164 (5) | 0.0118 (4) | 0.0102 (4) | 0.0074 (4) |
C4 | 0.0249 (5) | 0.0183 (5) | 0.0177 (5) | 0.0112 (4) | 0.0084 (4) | 0.0080 (4) |
C5 | 0.0248 (5) | 0.0173 (5) | 0.0175 (5) | 0.0112 (4) | 0.0095 (4) | 0.0064 (4) |
C6 | 0.0200 (5) | 0.0168 (5) | 0.0152 (5) | 0.0080 (4) | 0.0072 (4) | 0.0048 (4) |
C21 | 0.0226 (5) | 0.0190 (5) | 0.0210 (5) | 0.0126 (4) | 0.0082 (4) | 0.0075 (4) |
O21 | 0.0480 (5) | 0.0346 (5) | 0.0279 (4) | 0.0302 (4) | 0.0172 (4) | 0.0179 (4) |
O22 | 0.0349 (4) | 0.0263 (4) | 0.0256 (4) | 0.0216 (3) | 0.0179 (3) | 0.0122 (3) |
O41 | 0.0472 (5) | 0.0268 (4) | 0.0227 (4) | 0.0247 (4) | 0.0194 (4) | 0.0160 (3) |
C61 | 0.0249 (5) | 0.0184 (5) | 0.0158 (5) | 0.0088 (4) | 0.0081 (4) | 0.0065 (4) |
O61 | 0.0443 (5) | 0.0267 (4) | 0.0227 (4) | 0.0197 (4) | 0.0158 (4) | 0.0144 (3) |
O62 | 0.0459 (5) | 0.0299 (4) | 0.0233 (4) | 0.0250 (4) | 0.0224 (4) | 0.0153 (3) |
S1 | 0.02493 (16) | 0.02090 (16) | 0.02033 (16) | 0.01183 (11) | 0.01011 (10) | 0.00898 (11) |
O1S | 0.0436 (5) | 0.0200 (4) | 0.0240 (4) | 0.0165 (3) | 0.0195 (4) | 0.0118 (3) |
C1S | 0.0409 (7) | 0.0210 (5) | 0.0299 (6) | 0.0101 (5) | 0.0060 (5) | 0.0056 (5) |
C2S | 0.0393 (7) | 0.0315 (6) | 0.0221 (5) | 0.0164 (5) | 0.0149 (5) | 0.0143 (5) |
Geometric parameters (Å, º) top
N1—C2 | 1.3519 (13) | O22—H22 | 0.8400 |
N1—C6 | 1.3638 (13) | O41—H41 | 0.8400 |
N1—H1 | 0.818 (18) | C61—O61 | 1.2180 (13) |
C2—C3 | 1.3739 (14) | C61—O62 | 1.3095 (13) |
C2—C21 | 1.5298 (14) | O62—H62 | 0.94 (2) |
C3—C4 | 1.4319 (14) | S1—O1S | 1.5318 (8) |
C3—H3 | 0.9500 | S1—C1S | 1.7834 (13) |
C4—O41 | 1.2956 (13) | S1—C2S | 1.7898 (12) |
C4—C5 | 1.4314 (14) | C1S—H1S1 | 0.9800 |
C5—C6 | 1.3662 (14) | C1S—H1S2 | 0.9800 |
C5—H5 | 0.9500 | C1S—H1S3 | 0.9800 |
C6—C61 | 1.5110 (14) | C2S—H2S1 | 0.9800 |
C21—O21 | 1.2317 (14) | C2S—H2S2 | 0.9800 |
C21—O22 | 1.2823 (13) | C2S—H2S3 | 0.9800 |
| | | |
C2—N1—C6 | 122.14 (9) | C21—O22—H22 | 109.5 |
C2—N1—H1 | 118.7 (12) | C4—O41—H41 | 109.5 |
C6—N1—H1 | 119.2 (12) | O61—C61—O62 | 126.58 (10) |
N1—C2—C3 | 120.35 (9) | O61—C61—C6 | 119.79 (9) |
N1—C2—C21 | 113.80 (9) | O62—C61—C6 | 113.62 (9) |
C3—C2—C21 | 125.82 (9) | C61—O62—H62 | 105.7 (14) |
C2—C3—C4 | 119.69 (9) | O1S—S1—C1S | 105.86 (6) |
C2—C3—H3 | 120.2 | O1S—S1—C2S | 104.46 (5) |
C4—C3—H3 | 120.2 | C1S—S1—C2S | 97.38 (6) |
O41—C4—C5 | 118.88 (9) | S1—C1S—H1S1 | 109.5 |
O41—C4—C3 | 123.46 (9) | S1—C1S—H1S2 | 109.5 |
C5—C4—C3 | 117.65 (9) | H1S1—C1S—H1S2 | 109.5 |
C6—C5—C4 | 119.59 (9) | S1—C1S—H1S3 | 109.5 |
C6—C5—H5 | 120.2 | H1S1—C1S—H1S3 | 109.5 |
C4—C5—H5 | 120.2 | H1S2—C1S—H1S3 | 109.5 |
N1—C6—C5 | 120.56 (9) | S1—C2S—H2S1 | 109.5 |
N1—C6—C61 | 113.75 (9) | S1—C2S—H2S2 | 109.5 |
C5—C6—C61 | 125.69 (9) | H2S1—C2S—H2S2 | 109.5 |
O21—C21—O22 | 128.33 (10) | S1—C2S—H2S3 | 109.5 |
O21—C21—C2 | 117.44 (10) | H2S1—C2S—H2S3 | 109.5 |
O22—C21—C2 | 114.21 (9) | H2S2—C2S—H2S3 | 109.5 |
| | | |
C6—N1—C2—C3 | −0.42 (16) | C4—C5—C6—N1 | 0.34 (16) |
C6—N1—C2—C21 | −178.69 (9) | C4—C5—C6—C61 | 179.97 (10) |
N1—C2—C3—C4 | −0.36 (16) | N1—C2—C21—O21 | 3.46 (15) |
C21—C2—C3—C4 | 177.69 (10) | C3—C2—C21—O21 | −174.70 (11) |
C2—C3—C4—O41 | −178.73 (10) | N1—C2—C21—O22 | −177.90 (9) |
C2—C3—C4—C5 | 1.07 (16) | C3—C2—C21—O22 | 3.94 (16) |
O41—C4—C5—C6 | 178.75 (10) | N1—C6—C61—O61 | −0.11 (15) |
C3—C4—C5—C6 | −1.06 (16) | C5—C6—C61—O61 | −179.77 (11) |
C2—N1—C6—C5 | 0.43 (16) | N1—C6—C61—O62 | 178.82 (9) |
C2—N1—C6—C61 | −179.24 (9) | C5—C6—C61—O62 | −0.83 (16) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O21 | 0.818 (18) | 2.289 (18) | 2.6478 (12) | 107.2 (14) |
N1—H1···O61 | 0.818 (18) | 2.331 (17) | 2.6720 (12) | 105.8 (14) |
C5—H5···O1Si | 0.95 | 2.31 | 3.2593 (13) | 174 |
O22—H22···O22ii | 0.84 | 1.64 | 2.4703 (15) | 170 |
O41—H41···O41iii | 0.84 | 1.63 | 2.4509 (16) | 166 |
O62—H62···O1S | 0.94 (2) | 1.61 (2) | 2.5419 (12) | 173 (2) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x, −y+2, −z+2; (iii) −x+1, −y+1, −z+2. |
(IIa) dimethyl 4-hydroxypyridine-2,6-dicarboxylate monohydrate
top
Crystal data top
C9H9NO5·H2O | F(000) = 960 |
Mr = 229.19 | Dx = 1.457 Mg m−3 |
Monoclinic, I2/a | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -I 2ya | Cell parameters from 4497 reflections |
a = 17.241 (3) Å | θ = 3.5–25.8° |
b = 6.1519 (12) Å | µ = 0.12 mm−1 |
c = 20.710 (4) Å | T = 173 K |
β = 107.96 (3)° | Plate, colourless |
V = 2089.6 (7) Å3 | 0.40 × 0.28 × 0.13 mm |
Z = 8 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1474 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.080 |
Graphite monochromator | θmax = 25.7°, θmin = 3.5° |
ω scans | h = −18→20 |
5752 measured reflections | k = −7→7 |
1951 independent reflections | l = −25→25 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0477P)2] where P = (Fo2 + 2Fc2)/3 |
1951 reflections | (Δ/σ)max < 0.001 |
159 parameters | Δρmax = 0.17 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
Crystal data top
C9H9NO5·H2O | V = 2089.6 (7) Å3 |
Mr = 229.19 | Z = 8 |
Monoclinic, I2/a | Mo Kα radiation |
a = 17.241 (3) Å | µ = 0.12 mm−1 |
b = 6.1519 (12) Å | T = 173 K |
c = 20.710 (4) Å | 0.40 × 0.28 × 0.13 mm |
β = 107.96 (3)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1474 reflections with I > 2σ(I) |
5752 measured reflections | Rint = 0.080 |
1951 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.17 e Å−3 |
1951 reflections | Δρmin = −0.23 e Å−3 |
159 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.61782 (8) | 0.8964 (2) | 0.11852 (7) | 0.0208 (3) | |
C2 | 0.65285 (10) | 0.7200 (3) | 0.15439 (8) | 0.0202 (4) | |
C3 | 0.73477 (10) | 0.6671 (3) | 0.16862 (8) | 0.0218 (4) | |
H3 | 0.7565 | 0.5417 | 0.1947 | 0.026* | |
C4 | 0.78472 (10) | 0.8015 (3) | 0.14384 (8) | 0.0212 (4) | |
C5 | 0.74899 (10) | 0.9820 (3) | 0.10443 (8) | 0.0220 (4) | |
H5 | 0.7801 | 1.0747 | 0.0853 | 0.026* | |
C6 | 0.66635 (10) | 1.0211 (3) | 0.09425 (8) | 0.0194 (4) | |
C21 | 0.59473 (10) | 0.5840 (3) | 0.17920 (8) | 0.0204 (4) | |
C22 | 0.58219 (12) | 0.2723 (3) | 0.24261 (10) | 0.0309 (4) | |
H22A | 0.5452 | 0.3622 | 0.2590 | 0.046* | 0.61 (2) |
H22B | 0.6174 | 0.1873 | 0.2804 | 0.046* | 0.61 (2) |
H22C | 0.5503 | 0.1736 | 0.2072 | 0.046* | 0.61 (2) |
H22D | 0.5917 | 0.1198 | 0.2336 | 0.046* | 0.39 (2) |
H22E | 0.5245 | 0.3079 | 0.2213 | 0.046* | 0.39 (2) |
H22F | 0.5966 | 0.2954 | 0.2917 | 0.046* | 0.39 (2) |
O21 | 0.52335 (7) | 0.6269 (2) | 0.16812 (6) | 0.0277 (3) | |
O22 | 0.63235 (7) | 0.41172 (19) | 0.21477 (6) | 0.0260 (3) | |
O41 | 0.86443 (7) | 0.7511 (2) | 0.15935 (6) | 0.0272 (3) | |
H41 | 0.8940 (18) | 0.849 (4) | 0.1359 (14) | 0.063 (8)* | |
C61 | 0.62268 (11) | 1.2146 (3) | 0.05374 (8) | 0.0217 (4) | |
C62 | 0.63320 (13) | 1.5086 (3) | −0.01640 (10) | 0.0333 (4) | |
H62A | 0.5876 | 1.4572 | −0.0546 | 0.050* | 0.70 (2) |
H62B | 0.6735 | 1.5805 | −0.0337 | 0.050* | 0.70 (2) |
H62C | 0.6130 | 1.6120 | 0.0106 | 0.050* | 0.70 (2) |
H62D | 0.6323 | 1.4821 | −0.0633 | 0.050* | 0.30 (2) |
H62E | 0.6646 | 1.6408 | 0.0007 | 0.050* | 0.30 (2) |
H62F | 0.5773 | 1.5268 | −0.0150 | 0.050* | 0.30 (2) |
O61 | 0.55315 (8) | 1.2644 (2) | 0.04852 (7) | 0.0320 (3) | |
O62 | 0.67108 (8) | 1.32419 (19) | 0.02594 (6) | 0.0272 (3) | |
O1W | 0.44055 (8) | 1.0083 (2) | 0.09349 (7) | 0.0314 (3) | |
H1W | 0.4801 (18) | 1.090 (5) | 0.0769 (14) | 0.065 (8)* | |
H2W | 0.4657 (17) | 0.895 (4) | 0.1095 (13) | 0.052 (8)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0174 (7) | 0.0252 (7) | 0.0196 (7) | 0.0014 (6) | 0.0052 (6) | −0.0018 (6) |
C2 | 0.0194 (9) | 0.0236 (8) | 0.0178 (8) | 0.0010 (7) | 0.0061 (6) | −0.0032 (7) |
C3 | 0.0193 (8) | 0.0254 (8) | 0.0205 (9) | 0.0028 (7) | 0.0057 (7) | −0.0004 (7) |
C4 | 0.0160 (8) | 0.0270 (8) | 0.0207 (9) | 0.0024 (7) | 0.0056 (6) | −0.0045 (7) |
C5 | 0.0190 (9) | 0.0246 (8) | 0.0227 (9) | −0.0012 (7) | 0.0069 (7) | −0.0013 (7) |
C6 | 0.0168 (8) | 0.0227 (8) | 0.0185 (8) | 0.0002 (6) | 0.0053 (6) | −0.0030 (6) |
C21 | 0.0201 (9) | 0.0230 (8) | 0.0189 (8) | −0.0007 (7) | 0.0070 (7) | −0.0041 (7) |
C22 | 0.0267 (10) | 0.0337 (9) | 0.0336 (10) | −0.0053 (8) | 0.0113 (8) | 0.0060 (8) |
O21 | 0.0187 (6) | 0.0340 (7) | 0.0322 (7) | 0.0020 (5) | 0.0106 (5) | 0.0031 (5) |
O22 | 0.0215 (6) | 0.0264 (6) | 0.0313 (7) | 0.0007 (5) | 0.0099 (5) | 0.0054 (5) |
O41 | 0.0122 (6) | 0.0345 (7) | 0.0340 (7) | 0.0038 (5) | 0.0060 (5) | 0.0033 (6) |
C61 | 0.0208 (9) | 0.0238 (8) | 0.0198 (8) | 0.0007 (7) | 0.0053 (7) | −0.0017 (7) |
C62 | 0.0334 (10) | 0.0302 (9) | 0.0329 (10) | 0.0013 (8) | 0.0052 (8) | 0.0118 (8) |
O61 | 0.0242 (7) | 0.0347 (7) | 0.0401 (8) | 0.0104 (6) | 0.0141 (6) | 0.0094 (6) |
O62 | 0.0217 (6) | 0.0282 (6) | 0.0304 (7) | 0.0007 (5) | 0.0062 (5) | 0.0078 (5) |
O1W | 0.0192 (7) | 0.0365 (7) | 0.0394 (8) | 0.0039 (6) | 0.0103 (6) | −0.0002 (6) |
Geometric parameters (Å, º) top
N1—C6 | 1.342 (2) | C22—H22C | 0.9800 |
N1—C2 | 1.348 (2) | C22—H22D | 0.9800 |
C2—C3 | 1.390 (2) | C22—H22E | 0.9800 |
C2—C21 | 1.512 (2) | C22—H22F | 0.9800 |
C3—C4 | 1.401 (2) | O41—H41 | 1.00 (3) |
C3—H3 | 0.9500 | C61—O61 | 1.209 (2) |
C4—O41 | 1.348 (2) | C61—O62 | 1.333 (2) |
C4—C5 | 1.403 (2) | C62—O62 | 1.459 (2) |
C5—C6 | 1.395 (2) | C62—H62A | 0.9800 |
C5—H5 | 0.9500 | C62—H62B | 0.9800 |
C6—C61 | 1.516 (2) | C62—H62C | 0.9800 |
C21—O21 | 1.210 (2) | C62—H62D | 0.9800 |
C21—O22 | 1.339 (2) | C62—H62E | 0.9800 |
C22—O22 | 1.457 (2) | C62—H62F | 0.9800 |
C22—H22A | 0.9800 | O1W—H1W | 0.99 (3) |
C22—H22B | 0.9800 | O1W—H2W | 0.84 (3) |
| | | |
C6—N1—C2 | 116.20 (14) | O22—C22—H22F | 109.5 |
N1—C2—C3 | 123.98 (15) | H22A—C22—H22F | 62.8 |
N1—C2—C21 | 113.67 (14) | H22B—C22—H22F | 49.6 |
C3—C2—C21 | 122.35 (15) | H22C—C22—H22F | 140.4 |
C2—C3—C4 | 118.91 (15) | H22D—C22—H22F | 109.5 |
C2—C3—H3 | 120.5 | H22E—C22—H22F | 109.5 |
C4—C3—H3 | 120.5 | C21—O22—C22 | 115.96 (14) |
O41—C4—C3 | 118.28 (15) | C4—O41—H41 | 112.3 (16) |
O41—C4—C5 | 123.61 (16) | O61—C61—O62 | 124.64 (15) |
C3—C4—C5 | 118.11 (15) | O61—C61—C6 | 123.89 (16) |
C6—C5—C4 | 117.98 (15) | O62—C61—C6 | 111.46 (14) |
C6—C5—H5 | 121.0 | O62—C62—H62A | 109.5 |
C4—C5—H5 | 121.0 | O62—C62—H62B | 109.5 |
N1—C6—C5 | 124.77 (15) | H62A—C62—H62B | 109.5 |
N1—C6—C61 | 113.31 (14) | O62—C62—H62C | 109.5 |
C5—C6—C61 | 121.92 (15) | H62A—C62—H62C | 109.5 |
O21—C21—O22 | 124.71 (16) | H62B—C62—H62C | 109.5 |
O21—C21—C2 | 123.84 (15) | O62—C62—H62D | 109.5 |
O22—C21—C2 | 111.45 (14) | H62A—C62—H62D | 51.9 |
O22—C22—H22A | 109.5 | H62B—C62—H62D | 60.6 |
O22—C22—H22B | 109.5 | H62C—C62—H62D | 140.8 |
H22A—C22—H22B | 109.5 | O62—C62—H62E | 109.5 |
O22—C22—H22C | 109.5 | H62A—C62—H62E | 140.8 |
H22A—C22—H22C | 109.5 | H62B—C62—H62E | 51.9 |
H22B—C22—H22C | 109.5 | H62C—C62—H62E | 60.6 |
O22—C22—H22D | 109.5 | H62D—C62—H62E | 109.5 |
H22A—C22—H22D | 140.4 | O62—C62—H62F | 109.5 |
H22B—C22—H22D | 62.8 | H62A—C62—H62F | 60.6 |
H22C—C22—H22D | 49.6 | H62B—C62—H62F | 140.8 |
O22—C22—H22E | 109.5 | H62C—C62—H62F | 51.9 |
H22A—C22—H22E | 49.6 | H62D—C62—H62F | 109.5 |
H22B—C22—H22E | 140.4 | H62E—C62—H62F | 109.5 |
H22C—C22—H22E | 62.8 | C61—O62—C62 | 115.39 (14) |
H22D—C22—H22E | 109.5 | H1W—O1W—H2W | 104 (2) |
| | | |
C6—N1—C2—C3 | 2.0 (2) | N1—C2—C21—O21 | 0.2 (2) |
C6—N1—C2—C21 | −178.91 (14) | C3—C2—C21—O21 | 179.35 (17) |
N1—C2—C3—C4 | −0.9 (3) | N1—C2—C21—O22 | −179.68 (13) |
C21—C2—C3—C4 | −179.95 (15) | C3—C2—C21—O22 | −0.5 (2) |
C2—C3—C4—O41 | 178.48 (15) | O21—C21—O22—C22 | −1.4 (2) |
C2—C3—C4—C5 | −1.3 (2) | C2—C21—O22—C22 | 178.48 (14) |
O41—C4—C5—C6 | −177.52 (15) | N1—C6—C61—O61 | 6.3 (2) |
C3—C4—C5—C6 | 2.2 (2) | C5—C6—C61—O61 | −173.56 (17) |
C2—N1—C6—C5 | −0.9 (2) | N1—C6—C61—O62 | −174.92 (14) |
C2—N1—C6—C61 | 179.27 (13) | C5—C6—C61—O62 | 5.2 (2) |
C4—C5—C6—N1 | −1.2 (2) | O61—C61—O62—C62 | −3.6 (2) |
C4—C5—C6—C61 | 178.65 (14) | C6—C61—O62—C62 | 177.62 (14) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O41—H41···O1Wi | 1.00 (3) | 1.62 (3) | 2.6225 (19) | 176 (2) |
O1W—H1W···O61 | 0.99 (3) | 1.88 (3) | 2.869 (2) | 176 (2) |
O1W—H2W···O21 | 0.84 (3) | 2.11 (3) | 2.928 (2) | 168 (2) |
Symmetry code: (i) x+1/2, −y+2, z. |
Experimental details
| (Ia) | (Ib) | (Ic) | (IIa) |
Crystal data |
Chemical formula | C7H5NO5·CH4O | C2H8N+·C7H4NO5− | C7H5NO5·C2H6OS | C9H9NO5·H2O |
Mr | 215.16 | 228.20 | 261.25 | 229.19 |
Crystal system, space group | Monoclinic, P21/n | Triclinic, P1 | Triclinic, P1 | Monoclinic, I2/a |
Temperature (K) | 173 | 173 | 173 | 173 |
a, b, c (Å) | 5.8256 (5), 12.5648 (12), 12.7464 (11) | 7.3688 (8), 11.1416 (12), 14.3584 (15) | 4.7460 (4), 10.4917 (9), 11.9787 (11) | 17.241 (3), 6.1519 (12), 20.710 (4) |
α, β, γ (°) | 90, 100.303 (7), 90 | 69.025 (8), 79.438 (9), 72.455 (9) | 103.592 (7), 97.606 (7), 101.651 (7) | 90, 107.96 (3), 90 |
V (Å3) | 917.96 (14) | 1045.74 (19) | 557.59 (9) | 2089.6 (7) |
Z | 4 | 4 | 2 | 8 |
Radiation type | Mo Kα | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.14 | 0.12 | 0.31 | 0.12 |
Crystal size (mm) | 0.52 × 0.50 × 0.44 | 0.42 × 0.40 × 0.40 | 0.36 × 0.28 × 0.22 | 0.40 × 0.28 × 0.13 |
|
Data collection |
Diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer |
Absorption correction | – | – | Multi-scan (MULABS; Spek, 2009; Blessing, 1995) | – |
Tmin, Tmax | – | – | 0.897, 0.936 | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8713, 1712, 1491 | 10298, 3884, 3102 | 11141, 2552, 2458 | 5752, 1951, 1474 |
Rint | 0.043 | 0.066 | 0.038 | 0.080 |
(sin θ/λ)max (Å−1) | 0.607 | 0.607 | 0.652 | 0.610 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.096, 1.07 | 0.043, 0.114, 1.00 | 0.028, 0.078, 1.06 | 0.039, 0.100, 1.01 |
No. of reflections | 1712 | 3884 | 2552 | 1951 |
No. of parameters | 153 | 325 | 169 | 159 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.26 | 0.30, −0.24 | 0.39, −0.32 | 0.17, −0.23 |
Hydrogen-bond geometry (Å, º) for (Ia) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O61i | 0.86 (2) | 2.61 (2) | 3.4354 (18) | 163.7 (19) |
O41—H41···O21ii | 1.07 (3) | 1.43 (3) | 2.4827 (14) | 170 (2) |
O62—H62···O1M | 1.03 (3) | 1.50 (3) | 2.5274 (15) | 174 (3) |
O1M—H1M···O22i | 0.97 (3) | 1.71 (3) | 2.6617 (16) | 167 (2) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x−1/2, −y+3/2, z+1/2. |
Hydrogen-bond geometry (Å, º) for (Ib) top
D—H···A | D—H | H···A | D···A | D—H···A |
O41'—H22···O22 | 1.24 (4) | 1.24 (4) | 2.4788 (15) | 176 (3) |
O41—H41···O22'i | 0.99 (3) | 1.59 (3) | 2.5765 (16) | 175 (3) |
O62—H62···O62'ii | 1.03 (3) | 1.50 (3) | 2.5255 (16) | 174 (3) |
N1'—H1'···O22' | 0.87 (2) | 2.31 (2) | 2.6437 (17) | 102.8 (15) |
N1'—H1'···O61' | 0.87 (2) | 2.348 (19) | 2.7095 (17) | 105.0 (15) |
N2Y—H2Y1···N1 | 0.92 (2) | 2.13 (2) | 3.005 (2) | 159 (2) |
N2Y—H2Y2···O21iii | 0.96 (2) | 1.94 (3) | 2.8459 (19) | 157.1 (19) |
N2Z—H2Z2···O21'iv | 0.96 (3) | 1.82 (3) | 2.7645 (19) | 167 (2) |
N2Z—H2Z1···O61' | 0.96 (2) | 1.93 (2) | 2.8151 (19) | 152.5 (18) |
Symmetry codes: (i) x+1, y−1, z+1; (ii) −x+2, −y, −z+1; (iii) −x+2, −y+1, −z+1; (iv) x, y−1, z. |
Hydrogen-bond geometry (Å, º) for (Ic) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O21 | 0.818 (18) | 2.289 (18) | 2.6478 (12) | 107.2 (14) |
N1—H1···O61 | 0.818 (18) | 2.331 (17) | 2.6720 (12) | 105.8 (14) |
C5—H5···O1Si | 0.95 | 2.31 | 3.2593 (13) | 174.1 |
O22—H22···O22ii | 0.84 | 1.64 | 2.4703 (15) | 169.9 |
O41—H41···O41iii | 0.84 | 1.63 | 2.4509 (16) | 166.3 |
O62—H62···O1S | 0.94 (2) | 1.61 (2) | 2.5419 (12) | 173 (2) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x, −y+2, −z+2; (iii) −x+1, −y+1, −z+2. |
Hydrogen-bond geometry (Å, º) for (IIa) top
D—H···A | D—H | H···A | D···A | D—H···A |
O41—H41···O1Wi | 1.00 (3) | 1.62 (3) | 2.6225 (19) | 176 (2) |
O1W—H1W···O61 | 0.99 (3) | 1.88 (3) | 2.869 (2) | 176 (2) |
O1W—H2W···O21 | 0.84 (3) | 2.11 (3) | 2.928 (2) | 168 (2) |
Symmetry code: (i) x+1/2, −y+2, z. |
Selected C—O bond lengths (Å) top | (Ia) | (Ib) | (Ic) |
C4—O41 | 1.3118 (18) | 1.3410 (19) | 1.2956 (13) |
C4'—O41' | | 1.2899 (18) | |
C21—O21 | 1.2644 (18) | 1.2285 (19) | 1.2317 (14) |
C21'—O21' | | 1.246 (2) | |
C21—O22 | 1.2409 (19) | 1.2998 (18) | 1.2823 (13) |
C21'—O22' | | 1.2594 (19) | |
C61—O61 | 1.2124 (19) | 1.208 (2) | 1.2180 (13) |
C61'—O61' | | 1.246 (2) | |
C61—O62 | 1.3136 (18) | 1.318 (2) | 1.3095 (13) |
C61'—O62' | | 1.261 (2) | |
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Chelidamic acid, (I), and its derivatives are widely used as starting materials for multichelating ligands in coordination chemistry, biochemistry and medicinal chemistry (Zou et al., 2009). They can adopt different tautomeric and zwitterionic forms, resulting from intra- or intermolecular proton transfer. A search of the Cambridge Structural Database (CSD, Version 5.33 of November 2011, plus two updates; Allen, 2002) for 4-hydroxypyridine and 4-pyridone fragments yielded 68 structures, of which 36 exhibit the hydroxypyridine tautomer [mean C—O = 1.34 (2) Å] and 32 the pyridone form [mean C—O = 1.268 (14) Å]. According to a density functional theory (DFT) study, unsubstituted 4-hydroxypyridine is more stable than 4-pyridone; however, the stabilities are reversed if two methyl ester groups are substituted at positions 2 and 6 (Alkorta & Elguero, 2001). In order to examine these interesting structural aspects, we recrystallized chelidamic acid from various solvents and obtained a methanol monosolvate, (Ia), a dimethylammonium salt, (Ib), and a dimethyl sulfoxide monosolvate, (Ic). For comparison, we also crystallized its dimethyl ester as a monohydrate, (IIa), and a solvent-free modification, (II), of minor crystal quality (Tutughamiarso et al., 2009).
Pseudopolymorph (Ia) crystallized in the monoclinic space group P21/n, with one chelidamic acid and one methanol molecule in the asymmetric unit (Fig. 1). Proton transfer from one of the carboxy groups to the pyridine N atom has led to a zwitterionic form. The O atoms of the carboxylate group are displaced by 0.183 (2) and 0.326 (2) Å at opposite directions from the planar pyridine ring [N1—C2—C21—O21 = 168.44 (13)° and N1—C2—C21—O22 = -12.50 (19)°]. The planes through the neutral carboxy group and the pyridine ring enclose a dihedral angle of 6.1 (2)°, with the carbonyl O atom synperiplanar to the N atom [N1—C6—C61—O61 = 5.00 (19)°]. Two chelidamic acid and two methanol molecules form a centrosymmetric dimer held together by six hydrogen bonds: the chelidamic acid molecules are connected by an R22(10) interaction (Bernstein et al., 1995) with two N—H···O hydrogen bonds, the chelidamic acid and the methanol molecules by an R33(11) interaction with four O—H···O hydrogen bonds (Table 1 and Fig. 2). However, since the N1···O61 distance of 3.4354 (18) Å is well beyond the expected value for that kind of hydrogen bond, it seems that the two N—H···O interactions are more like close contacts resulting from the dimer formation through the O—H···O hydrogen bonds with the solvent. These dimers are linked [in?]to chains running along the ac diagonal by further O—H···O bonds between the 4-hydroxy and the carboxylate groups, with a dihedral angle of 65.21 (2)° between neighbouring chelidamic acid molecules.
Compound (Ib), which crystallized in the triclinic space group P1, was obtained by recrystallization of chelidamic acid from commercial dimethylformamide. Under the crystallization conditions, the solvent probably reacted with water to [form?] formic acid and dimethylamine, which would explain the unexpected formation of the dimethylammonium salt of chelidamic acid. As another surprise, the asymmetric unit of (Ib) consists, apart from two dimethylammonium cations, either of one neutral acid molecule and one dianion or of two monoanions with different constitution, depending on the position of one H atom between the two chelidamic acid entities (Fig. 3). Actually carboxy atom O22 and hydroxy atom O41' are connected by a symmetric O—H···O hydrogen bond characterized by a very short O22···O41' distance of 2.4788 (15) Å and O22—H22 and O41'—H22 distances of 1.24 (4)Å, which are significantly longer than a standard O—H bond. In the unprimed entity, the pyridine N atom is antiperiplanar to one of the carbonyl O atoms [N1—C2—C21—O21 = -157.69 (15)°] and synperiplanar to the other one [N1—C6—C61—O61 = 7.9 (3)°]. In the primed entity, the carboxylate groups and the pyridine ring enclose dihedral angles of 4.9 (2) and 11.5 (2)°, respectively. The short distances between the N1'—H group and the carboxylate O atoms give rise to strong electrostatic interactions. Alternating chelidamic acid entities, whose planes enclose a dihedral angle of 17.45 (3)°, form double chains held together by two different R44(30) arrangements of O—H···O hydrogen bonds. The dimethylammonium cations connect these double chains into a three-dimensional network by N—H···N and N—H···O interactions (Table 2 and Fig. 4).
The asymmetric unit of pseudopolymorph (Ic), which also crystallized in P1, contains one planar chelidamic acid (r.m.s. deviation = 0.022 Å for all non-H atoms) and one dimethyl sulfoxide molecule connected by an O—H···O hydrogen bond (Fig. 5). Both carbonyl O atoms are synperiplanar to the pyridine N atom [torsion angles = 3.46 (15) and -0.11 (15)°]. Since the latter is protonated, one would expect that, similar to (Ia), one of the carboxy groups is deprotonated. However, not only the H atom bonded to carboxy atom O22, but also that bonded to hydroxy atom O41, is disordered over two equally occupied positions on both sides of inversion centres. Thus the molecular structure may be described as a superposition of four distinct forms: protonated and zwitterionic hydroxypyridine as well as neutral and deprotonated pyridone. As in (Ib), there are close contacts between the protonated N atom and the neighbouring O atoms. The crystal packing of (Ic) shows layers parallel to the (111) plane held together by O—H···O and C—H···O interactions (the latter from atom C5 to the solvent molecule) (Table 3 and Fig. 6).
Compound (IIa) crystallized in the monoclinic space group I2/a, with one chelidamic acid dimethyl ester and one water molecule in the asymmetric unit (Fig. 7). An R22(10) hydrogen-bonding pattern between the carbonyl O atoms and the water molecule stabilizes the synperiplanar conformation between these O atoms and the pyridine N atom [torsion angles = 0.2 (2) and 6.3 (2)°]. Furthermore, the water molecule accepts a hydrogen bond from the hydroxy group, thus forming chains along the a axis (Table 4 and Fig. 8). The conformation of (IIa) differs from that of the solvent-free structure of (II) (Fig. 9), where both carbonyl O atoms are antiperiplanar to the N atom (Tutughamiarso et al., 2009).
In contrast to the DFT study (Alkorta & Elguero, 2001), chelidamic acid dimethyl ester adopts the hydroxypyridine tautomeric form in the solid state. However, the situation is more complex for the structures (Ia)–(Ic). The pKa values of chelidamic acid [pKa1 = 1.4, pKa2 = 3.1 and pKa3 = 10.9 (Norkus et al., 2003)] suggest a proton transfer from one of the carboxy groups to the pyridine N atom. The zwitterionic form present in (Ia) is therefore expected; it is also observed in the crystal structure of chelidamic acid monohydrate (CSD refcode KIXCUP; Hall et al., 2000), but with an antiperiplanar conformation between the carbonyl O and the pyridine N atom.
In the short O41'—H···O22 hydrogen bond observed in (Ib), the H atom is located very close to the mid-point between the two O atoms. Therefore it is not possible to clearly distinguish which group is deprotonated. A similar hydrogen bond is observed in the structure of the guanidinium salt of chelidamic acid [O···O and O—H distances = 2.46, 1.19 and 1.30 Å; refcode SARJIF (Moghimi et al., 2005)]. A comparison of the C—O bond lengths in (Ib) with standard values (Allen et al., 1987) and those in (Ia) shows that the substituent at atom C2 is rather close to a neutral carboxy group, while the C4'—O41' bond length of 1.2899 (18) Å resembles that of a phenolate ion (Table 5). So it seems that this hydroxy group is at least partially deprotonated in the presence of a neutral carboxy group at C6.
That this is not pure speculation is confirmed by structure (Ic), which shows C—O bond lengths similar to those in (Ib). Here clearly one H atom is shared between two carboxy groups and one between two hydroxy groups, again in the presence of a –COOH group at atom C6. In view of the pKa values mentioned above, these are unexpected results. The O—H···O hydrogen bond connecting two hydroxy groups (of which one is deprotonated) may also be regarded as a connection between a protonated hydroxypyridine and a pyridone moiety (Fig. 6).
Although three of the four pyridine N atoms in (Ia)–(Ic) are protonated, there are no strong intermolecular N—H···O interactions resulting from that. In (Ia) there is only a rather long N—H···O hydrogen bond, whereas in (Ib) and (Ic), the N—H groups are not involved in the intermolecular hydrogen bonding. Instead they form close contacts (or perhaps intramolecular hydrogen bonds) to the neighbouring carboxylate and carboxy groups.
In (IIa) and the solvent-free form of (II), different conformations of the ester groups are observed. A CSD study of diesters of pyridine-2,6-dicarboxylic acids yielded 18 entries. Comparable with (IIa), ten entries show a synperiplanar (sp) conformation between both carbonyl O atoms and the pyridine N atom [refcodes ADEKOK (Huang & Xu, 2006), DELXUO (Gao et al., 2006), EMOJAS (Felsmann et al., 2011), TIFQUU, TIFRAB, TIFREF, TIFRIJ, TIFROP, TIFRUV (Grossel et al., 2001) and XEFDUH (Froidevaux et al., 2000)]. In three entries, an antiperiplanar (ap) conformation similar to the solvent-free structure of (II) is observed [refcodes SAYXUM (Du et al., 2006), VAHFOA (Habata et al., 2001) and YIVYOC (Abhayawardhana et al., 2007)]. In the remaining five entries, one carbonyl O atom adopts an sp, the other one an ap conformation with respect to the pyridine N atom [refcodes DUZPIY (Kaboub et al., 2010), GARROH (Bettencourt-Dias et al., 2005), HOSPAG (Boger et al., 1999), KITVOZ (Picot et al., 2008) and XIBRUW (Santoni et al., 2007)].
In order to compare the stabilities of the various conformers and tautomers of chelidamic acid dimethyl ester, (II), we have calculated the energies of the main conformers (sp/sp, sp/ap and ap/ap) of the hydroxypyridine and the pyridone tautomer by quantum-mechanical methods. For the hydroxypyridine tautomer, the ap/ap conformation [as in the solvent-free structure of (II)] is favoured by about 15 kJ mol-1 compared to sp/sp. The opposite order resulted for the pyridone tautomer:; here the sp/sp conformation is more stable than ap/ap by about 13 kJ mol-1. For both series, the sp/ap energy is approximately the average of the other two. Obviously it makes a big difference for the preferred ester conformation if there is just an N atom or instead an N—H group between the COOR substituents. These calculations confirm that the sp/sp conformation observed in (IIa) is considerably stabilized by the bridging water molecule.