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The mixed-ligand fluoro­phore-labelled copper(II) complex aqua­[2,4-dioxo-3-aza­tri­cyclo­[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaen-3-olato-κ2O2,O3](1,10-phenanthroline-κ2N,N′)copper(II) nitrate, [Cu(C12H6NO3)(C12H8N2)(H2O)]NO3·CH3OH or [Cu(L)(phen)(H2O)]NO3·CH3OH (where phen is 1,10-phen­anthroline and HL is N-hy­droxy­naph­tha­lene-1,8-di­car­box­imide), (1), was synthesized and structurally characterized. The structure of (1) was confirmed by single-crystal X-ray structure determination. The complex crystallized in the triclinic space group P\overline{1}. The geometry around the copper centre is distorted square pyramidal, with the apical position occupied by a water mol­ecule. The complex is highly fluorescent in organic and aqueous solutions. It has good anti­cancer activity, with an IC50 value of 17 µM, which is almost five times greater than cis­platin (IC50 = 82 µM) under identical experimental conditions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229622011147/ef3037sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229622011147/ef3037Isup2.hkl
Contains datablock I

CCDC reference: 2220960

Computing details top

Data collection: APEX2 (Bruker, 2010); cell refinement: SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: olex2.solve (Bourhis et al., 2015) and SHELXT2018 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).

Aqua[2,4-dioxo-3-azatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaen-3-olato-κO2,O3](1,10-phenanthroline-κN,N')copper(II) nitrate methanol monosolvate top
Crystal data top
[Cu(C12H6NO3)(C12H8N2)(H2O)]NO3·CH4OZ = 2
Mr = 567.99F(000) = 582
Triclinic, P1Dx = 1.649 Mg m3
a = 10.4795 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.1326 (4) ÅCell parameters from 6405 reflections
c = 12.1768 (7) Åθ = 2.2–27.8°
α = 101.393 (3)°µ = 1.02 mm1
β = 105.793 (3)°T = 296 K
γ = 115.958 (2)°Block, clear dark blue
V = 1143.78 (9) Å30.23 × 0.21 × 0.2 mm
Data collection top
Bruker SMART X2S benchtop
diffractometer
5312 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
φ and ω scansθmax = 31.9°, θmin = 1.9°
Absorption correction: multi-scan
(SADABS; Bruker, 2010)
h = 1515
Tmin = 0.618, Tmax = 0.746k = 1616
27013 measured reflectionsl = 1817
7598 independent reflections
Refinement top
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.042 w = 1/[σ2(Fo2) + (0.0591P)2 + 0.0324P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.116(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.51 e Å3
7598 reflectionsΔρmin = 0.52 e Å3
424 parametersExtinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0026 (8)
Primary atom site location: iterative
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Single crystal data of complex (1) was collected on a Bruker SMART X2S benchtop crystallographic system. Intensity measurements were performed using monochromated (doubly curved silicon crystal) Mo Kα radiation (λ = 0.71073 Å) from a sealed microfocus tube. Generator settings were 50 kV, 1 mA. APEX2 software was used for preliminary determination of the unit cell. Determination of integrated intensities and unit cell refinement were performed using SAINT (Bruker, 2010). Data were corrected for absorption effects with SADABS (Bruker, 2010) using the multiscan technique. The structure was resolved on Olex2.0 (Dolomanov et al., 2009) package using ShelxT (Sheldrick, 2015a) and refined by full-matrix least squares based on F2, using ShelexL (Sheldrick, 2015b). Crystal data, data collection and structurerefinementdetails for complex (1) were summarized in Table1. All non-H atoms were refined anisotropically.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cu10.64849 (3)0.47282 (2)0.09574 (2)0.03270 (9)
O20.60399 (16)0.59194 (13)0.20029 (13)0.0378 (3)
O10.82505 (16)0.65190 (13)0.12556 (13)0.0378 (3)
O31.05760 (17)0.92025 (15)0.20820 (14)0.0444 (3)
N30.83009 (18)0.75864 (15)0.20769 (14)0.0300 (3)
O40.7782 (2)0.4286 (2)0.25361 (19)0.0527 (4)
N10.67338 (18)0.35070 (16)0.02946 (14)0.0313 (3)
N20.44867 (18)0.29220 (16)0.04833 (14)0.0314 (3)
N41.1322 (2)0.4470 (2)0.26569 (18)0.0502 (5)
O61.2572 (2)0.4545 (2)0.2942 (2)0.0767 (6)
C130.7114 (2)0.72106 (19)0.24422 (16)0.0296 (4)
C110.4391 (2)0.17856 (18)0.02764 (15)0.0292 (4)
O71.1117 (3)0.5264 (2)0.33672 (19)0.0781 (6)
C120.5604 (2)0.21025 (18)0.06963 (16)0.0295 (4)
C240.8370 (2)0.97461 (19)0.37522 (16)0.0301 (4)
C140.7135 (2)0.83134 (19)0.33304 (16)0.0302 (4)
C40.5598 (2)0.1002 (2)0.14860 (16)0.0335 (4)
C220.9561 (2)1.01076 (19)0.33264 (16)0.0311 (4)
O51.0225 (3)0.3588 (2)0.16730 (19)0.0938 (8)
C230.9582 (2)0.89902 (19)0.24617 (17)0.0310 (4)
C70.3184 (2)0.03686 (19)0.06388 (17)0.0342 (4)
C100.3371 (2)0.2677 (2)0.08843 (18)0.0378 (4)
C180.8392 (2)1.0827 (2)0.46117 (17)0.0370 (4)
C10.7878 (2)0.3845 (2)0.06660 (19)0.0394 (4)
C150.5978 (3)0.7963 (2)0.37510 (19)0.0380 (4)
C30.6844 (3)0.1400 (2)0.18313 (19)0.0419 (5)
C211.0734 (3)1.1519 (2)0.3729 (2)0.0409 (5)
C190.9624 (3)1.2259 (2)0.5010 (2)0.0465 (5)
C50.4337 (3)0.0446 (2)0.18556 (19)0.0413 (5)
C60.3202 (3)0.0743 (2)0.14541 (19)0.0406 (5)
C80.2061 (2)0.0145 (2)0.0164 (2)0.0423 (5)
C90.2157 (3)0.1295 (2)0.0591 (2)0.0450 (5)
C170.7203 (3)1.0430 (2)0.5032 (2)0.0443 (5)
C20.7980 (3)0.2812 (2)0.1430 (2)0.0446 (5)
C160.6031 (3)0.9044 (3)0.4617 (2)0.0456 (5)
C201.0754 (3)1.2593 (2)0.4568 (2)0.0488 (6)
O80.6589 (3)0.3415 (2)0.42340 (19)0.0636 (5)
C250.5354 (4)0.3651 (4)0.4039 (3)0.0671 (7)
H90.146 (3)0.119 (2)0.094 (2)0.039 (6)*
H10.863 (2)0.483 (2)0.0347 (18)0.035 (5)*
H160.535 (3)0.881 (2)0.489 (2)0.035 (6)*
H211.147 (3)1.171 (2)0.3417 (19)0.035 (6)*
H30.691 (3)0.076 (3)0.229 (2)0.052 (7)*
H20.885 (3)0.309 (2)0.165 (2)0.051 (7)*
H100.347 (3)0.345 (2)0.141 (2)0.041 (6)*
H170.713 (3)1.106 (3)0.558 (2)0.054 (7)*
H80.131 (3)0.073 (3)0.035 (3)0.069 (8)*
H150.513 (3)0.705 (3)0.346 (2)0.048 (7)*
H25A0.554 (4)0.439 (4)0.366 (3)0.097 (11)*
H60.242 (3)0.168 (3)0.163 (2)0.053 (7)*
H201.147 (4)1.358 (3)0.480 (3)0.081 (9)*
H50.437 (3)0.117 (3)0.240 (2)0.059 (7)*
H190.959 (3)1.284 (3)0.556 (2)0.061 (8)*
H25B0.436 (4)0.283 (4)0.345 (3)0.098 (11)*
H25C0.513 (4)0.385 (4)0.475 (3)0.095 (11)*
H8A0.712 (3)0.372 (3)0.492 (3)0.068 (10)*
H4A0.769 (3)0.410 (3)0.308 (2)0.041 (7)*
H4B0.845 (3)0.443 (3)0.257 (3)0.042 (9)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu10.03265 (14)0.02420 (12)0.03814 (14)0.01289 (9)0.01809 (10)0.00498 (9)
O20.0349 (7)0.0276 (6)0.0519 (8)0.0143 (6)0.0258 (6)0.0097 (6)
O10.0407 (8)0.0268 (6)0.0485 (8)0.0169 (6)0.0281 (6)0.0063 (5)
O30.0376 (8)0.0369 (7)0.0583 (9)0.0159 (6)0.0296 (7)0.0112 (6)
N30.0321 (8)0.0254 (7)0.0349 (8)0.0154 (6)0.0184 (6)0.0080 (6)
O40.0438 (11)0.0670 (12)0.0522 (11)0.0299 (9)0.0220 (9)0.0250 (9)
N10.0318 (8)0.0275 (7)0.0338 (8)0.0146 (6)0.0161 (6)0.0081 (6)
N20.0285 (7)0.0313 (7)0.0306 (7)0.0136 (6)0.0129 (6)0.0076 (6)
N40.0464 (11)0.0515 (11)0.0468 (11)0.0189 (9)0.0219 (9)0.0189 (9)
O60.0591 (12)0.0926 (15)0.0833 (14)0.0443 (12)0.0350 (11)0.0218 (11)
C130.0312 (9)0.0288 (8)0.0318 (8)0.0175 (7)0.0148 (7)0.0097 (7)
C110.0272 (8)0.0276 (8)0.0273 (8)0.0123 (7)0.0085 (7)0.0077 (6)
O70.0967 (16)0.0973 (16)0.0668 (12)0.0713 (14)0.0359 (11)0.0263 (11)
C120.0318 (9)0.0272 (8)0.0280 (8)0.0158 (7)0.0108 (7)0.0079 (6)
C240.0347 (9)0.0286 (8)0.0289 (8)0.0197 (7)0.0111 (7)0.0088 (7)
C140.0323 (9)0.0311 (8)0.0321 (9)0.0196 (7)0.0152 (7)0.0106 (7)
C40.0382 (10)0.0322 (9)0.0291 (8)0.0217 (8)0.0100 (7)0.0066 (7)
C220.0325 (9)0.0276 (8)0.0314 (9)0.0160 (7)0.0114 (7)0.0085 (7)
O50.0658 (13)0.0812 (14)0.0640 (12)0.0015 (11)0.0078 (11)0.0156 (11)
C230.0310 (9)0.0279 (8)0.0343 (9)0.0154 (7)0.0139 (7)0.0109 (7)
C70.0283 (9)0.0296 (9)0.0351 (9)0.0119 (7)0.0066 (7)0.0101 (7)
C100.0306 (9)0.0427 (11)0.0354 (10)0.0169 (8)0.0150 (8)0.0081 (8)
C180.0447 (11)0.0374 (10)0.0325 (9)0.0269 (9)0.0141 (8)0.0081 (8)
C10.0377 (11)0.0360 (10)0.0418 (10)0.0162 (9)0.0209 (9)0.0098 (8)
C150.0373 (10)0.0410 (11)0.0417 (10)0.0235 (9)0.0203 (9)0.0129 (9)
C30.0494 (12)0.0440 (11)0.0363 (10)0.0305 (10)0.0185 (9)0.0060 (9)
C210.0404 (11)0.0311 (9)0.0452 (11)0.0153 (8)0.0168 (9)0.0111 (8)
C190.0574 (14)0.0317 (10)0.0435 (11)0.0255 (10)0.0155 (10)0.0021 (9)
C50.0438 (11)0.0289 (9)0.0404 (10)0.0197 (9)0.0086 (9)0.0023 (8)
C60.0370 (10)0.0248 (9)0.0430 (11)0.0122 (8)0.0053 (9)0.0052 (8)
C80.0280 (10)0.0381 (11)0.0476 (12)0.0095 (8)0.0110 (9)0.0155 (9)
C90.0313 (10)0.0529 (13)0.0473 (12)0.0170 (9)0.0202 (9)0.0177 (10)
C170.0554 (13)0.0465 (12)0.0395 (10)0.0352 (11)0.0220 (10)0.0075 (9)
C20.0435 (12)0.0507 (12)0.0464 (12)0.0257 (10)0.0274 (10)0.0153 (10)
C160.0484 (13)0.0562 (13)0.0467 (12)0.0337 (11)0.0295 (10)0.0165 (10)
C200.0524 (14)0.0298 (10)0.0500 (12)0.0162 (10)0.0159 (10)0.0069 (9)
O80.0681 (13)0.0665 (12)0.0513 (11)0.0357 (10)0.0237 (10)0.0115 (9)
C250.0637 (19)0.080 (2)0.0540 (16)0.0337 (17)0.0247 (14)0.0257 (15)
Geometric parameters (Å, º) top
Cu1—O21.9480 (13)C7—C81.397 (3)
Cu1—O11.9102 (14)C10—C91.391 (3)
Cu1—O42.307 (2)C10—H100.91 (2)
Cu1—N11.9870 (15)C18—C191.412 (3)
Cu1—N21.9897 (15)C18—C171.401 (3)
O2—C131.254 (2)C1—C21.392 (3)
O1—N31.3645 (18)C1—H10.94 (2)
O3—C231.202 (2)C15—C161.404 (3)
N3—C131.356 (2)C15—H150.92 (2)
N3—C231.413 (2)C3—C21.367 (3)
O4—H4A0.75 (3)C3—H30.85 (2)
O4—H4B0.63 (3)C21—C201.399 (3)
N1—C121.359 (2)C21—H210.92 (2)
N1—C11.324 (3)C19—C201.368 (4)
N2—C111.358 (2)C19—H190.85 (3)
N2—C101.328 (3)C5—C61.341 (3)
N4—O61.220 (3)C5—H50.96 (3)
N4—O71.242 (3)C6—H60.94 (3)
N4—O51.232 (3)C8—C91.367 (3)
C13—C141.455 (2)C8—H80.87 (3)
C11—C121.426 (3)C9—H90.91 (2)
C11—C71.399 (2)C17—C161.356 (3)
C12—C41.397 (2)C17—H170.92 (3)
C24—C141.411 (3)C2—H20.96 (3)
C24—C221.408 (3)C16—H160.83 (2)
C24—C181.417 (2)C20—H200.94 (3)
C14—C151.374 (3)O8—C251.399 (4)
C4—C31.394 (3)O8—H8A0.77 (3)
C4—C51.439 (3)C25—H25A0.99 (4)
C22—C231.475 (2)C25—H25B0.97 (4)
C22—C211.377 (3)C25—H25C0.97 (4)
C7—C61.436 (3)
O2—Cu1—O494.28 (7)C8—C7—C6125.03 (17)
O2—Cu1—N1172.42 (6)N2—C10—C9122.01 (19)
O2—Cu1—N294.60 (6)N2—C10—H10116.8 (14)
O1—Cu1—O284.06 (5)C9—C10—H10121.1 (14)
O1—Cu1—O494.95 (7)C19—C18—C24118.1 (2)
O1—Cu1—N197.09 (6)C17—C18—C24118.80 (19)
O1—Cu1—N2172.46 (6)C17—C18—C19123.07 (18)
N1—Cu1—O493.08 (7)N1—C1—C2122.31 (19)
N1—Cu1—N283.28 (6)N1—C1—H1114.7 (13)
N2—Cu1—O492.55 (7)C2—C1—H1123.0 (13)
C13—O2—Cu1111.09 (12)C14—C15—C16119.5 (2)
N3—O1—Cu1108.65 (10)C14—C15—H15122.9 (15)
O1—N3—C23116.88 (14)C16—C15—H15117.5 (16)
C13—N3—O1117.31 (14)C4—C3—H3120.0 (17)
C13—N3—C23125.81 (14)C2—C3—C4120.54 (18)
Cu1—O4—H4A138 (2)C2—C3—H3119.4 (17)
Cu1—O4—H4B113 (3)C22—C21—C20120.3 (2)
H4A—O4—H4B109 (3)C22—C21—H21117.0 (13)
C12—N1—Cu1111.23 (12)C20—C21—H21122.7 (14)
C1—N1—Cu1129.78 (13)C18—C19—H19112.9 (19)
C1—N1—C12118.58 (16)C20—C19—C18120.86 (19)
C11—N2—Cu1111.38 (12)C20—C19—H19126.1 (19)
C10—N2—Cu1129.86 (13)C4—C5—H5115.3 (16)
C10—N2—C11118.40 (16)C6—C5—C4121.54 (18)
O6—N4—O7120.5 (2)C6—C5—H5123.1 (16)
O6—N4—O5121.1 (2)C7—C6—H6115.5 (16)
O5—N4—O7118.4 (2)C5—C6—C7121.63 (18)
O2—C13—N3118.53 (15)C5—C6—H6122.7 (16)
O2—C13—C14122.44 (17)C7—C8—H8119.9 (19)
N3—C13—C14119.03 (16)C9—C8—C7119.58 (19)
N2—C11—C12116.43 (15)C9—C8—H8120.5 (19)
N2—C11—C7122.90 (17)C10—C9—H9117.7 (14)
C7—C11—C12120.67 (16)C8—C9—C10119.9 (2)
N1—C12—C11116.76 (15)C8—C9—H9122.4 (14)
N1—C12—C4122.81 (17)C18—C17—H17124.5 (17)
C4—C12—C11120.43 (16)C16—C17—C18121.25 (19)
C14—C24—C18118.88 (18)C16—C17—H17114.3 (17)
C22—C24—C14120.95 (16)C1—C2—H2120.1 (14)
C22—C24—C18120.16 (17)C3—C2—C1119.0 (2)
C24—C14—C13118.60 (17)C3—C2—H2121.0 (14)
C15—C14—C13120.57 (17)C15—C16—H16118.4 (15)
C15—C14—C24120.83 (17)C17—C16—C15120.7 (2)
C12—C4—C5117.93 (18)C17—C16—H16120.8 (15)
C3—C4—C12116.77 (17)C21—C20—H20123 (2)
C3—C4—C5125.29 (17)C19—C20—C21120.7 (2)
C24—C22—C23120.86 (16)C19—C20—H20115.9 (19)
C21—C22—C24119.87 (17)C25—O8—H8A111 (2)
C21—C22—C23119.26 (18)O8—C25—H25A108 (2)
O3—C23—N3120.30 (16)O8—C25—H25B114 (2)
O3—C23—C22125.03 (17)O8—C25—H25C115 (2)
N3—C23—C22114.67 (16)H25A—C25—H25B104 (3)
C11—C7—C6117.80 (19)H25A—C25—H25C114 (3)
C8—C7—C11117.16 (18)H25B—C25—H25C101 (3)
Cu1—O2—C13—N34.6 (2)C24—C22—C23—N32.6 (2)
Cu1—O2—C13—C14175.06 (13)C24—C22—C21—C200.6 (3)
Cu1—O1—N3—C133.82 (18)C24—C18—C19—C200.7 (3)
Cu1—O1—N3—C23176.80 (12)C24—C18—C17—C161.0 (3)
Cu1—N1—C12—C116.80 (19)C14—C24—C22—C232.3 (3)
Cu1—N1—C12—C4173.48 (14)C14—C24—C22—C21178.44 (17)
Cu1—N1—C1—C2170.53 (15)C14—C24—C18—C19179.05 (17)
Cu1—N2—C11—C126.89 (19)C14—C24—C18—C171.3 (3)
Cu1—N2—C11—C7172.88 (13)C14—C15—C16—C170.7 (3)
Cu1—N2—C10—C9169.80 (15)C4—C3—C2—C10.3 (3)
O2—C13—C14—C24178.36 (16)C4—C5—C6—C70.2 (3)
O2—C13—C14—C151.8 (3)C22—C24—C14—C130.0 (3)
O1—N3—C13—O20.6 (2)C22—C24—C14—C15179.76 (17)
O1—N3—C13—C14179.13 (14)C22—C24—C18—C190.6 (3)
O1—N3—C23—O31.0 (3)C22—C24—C18—C17179.06 (17)
O1—N3—C23—C22178.62 (14)C22—C21—C20—C190.7 (3)
N3—C13—C14—C241.9 (2)C23—N3—C13—O2178.74 (16)
N3—C13—C14—C15177.86 (17)C23—N3—C13—C141.6 (3)
N1—C12—C4—C31.6 (3)C23—C22—C21—C20178.73 (18)
N1—C12—C4—C5179.70 (16)C7—C11—C12—N1179.71 (15)
N1—C1—C2—C31.3 (3)C7—C11—C12—C40.6 (3)
N2—C11—C12—N10.1 (2)C7—C8—C9—C100.2 (3)
N2—C11—C12—C4179.67 (15)C10—N2—C11—C12179.21 (16)
N2—C11—C7—C6179.49 (17)C10—N2—C11—C71.0 (3)
N2—C11—C7—C81.3 (3)C18—C24—C14—C13179.60 (16)
N2—C10—C9—C82.2 (3)C18—C24—C14—C150.6 (3)
C13—N3—C23—O3179.71 (18)C18—C24—C22—C23178.07 (16)
C13—N3—C23—C220.7 (3)C18—C24—C22—C211.2 (3)
C13—C14—C15—C16179.38 (17)C18—C19—C20—C211.3 (3)
C11—N2—C10—C92.8 (3)C18—C17—C16—C150.0 (3)
C11—C12—C4—C3178.64 (17)C1—N1—C12—C11179.86 (17)
C11—C12—C4—C50.0 (3)C1—N1—C12—C40.1 (3)
C11—C7—C6—C50.4 (3)C3—C4—C5—C6178.1 (2)
C11—C7—C8—C91.8 (3)C21—C22—C23—O31.5 (3)
C12—N1—C1—C21.4 (3)C21—C22—C23—N3178.10 (17)
C12—C11—C7—C60.7 (2)C19—C18—C17—C16179.4 (2)
C12—C11—C7—C8178.49 (17)C5—C4—C3—C2179.77 (19)
C12—C4—C3—C21.7 (3)C6—C7—C8—C9179.00 (19)
C12—C4—C5—C60.4 (3)C8—C7—C6—C5178.8 (2)
C24—C14—C15—C160.4 (3)C17—C18—C19—C20179.7 (2)
C24—C22—C23—O3177.80 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O8—H8A···O7i0.77 (3)2.05 (3)2.804 (3)168 (3)
O4—H4A···O80.75 (3)2.10 (3)2.813 (3)159 (3)
Symmetry code: (i) x+2, y+1, z+1.
 

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