Journal of Applied Crystallography

Volume 39, Part 2 (April 2006)


research papers



J. Appl. Cryst. (2006). 39, 158-168    [ doi:10.1107/S0021889805042299 ]

Improved statistics for determining the Patterson symmetry from unmerged diffraction intensities

N. K. Sauter, R. W. Grosse-Kunstleve and P. D. Adams

Abstract: Procedures for detecting the point-group symmetry of macromolecular data sets are examined and enhancements are proposed. To validate a point group, it is sufficient to compare pairs of Bragg reflections that are related by each of the group's component symmetry operators. Correlation is commonly expressed in the form of a single statistical quantity (such as Rmerge) that incorporates information from all of the observed reflections. However, the usual practice of weighting all pairs of symmetry-related intensities equally can obscure the fact that the various symmetry operators of the point group contribute differing fractions of the total set. In some cases where particular symmetry elements are significantly under-represented, statistics calculated globally over all observations do not permit conclusions about the point group and Patterson symmetry. The problem can be avoided by repartitioning the data in a way that explicitly takes note of individual operators. The new analysis methods, incorporated into the program LABELIT (http://cci.lbl.gov/labelit), can be performed early enough during data acquisition, and are quick enough that it is feasible to pause to optimize the data collection strategy.

Keywords: point-group symmetry; Patterson symmetry; macromolecular crystallography; computer programs.

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