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The main features of the crystal structure of the title radical, C
13H
7D
16N
2O
2, are N—H
O and C—H
O hydrogen bonds, which are responsible for the formation of chains of molecules in the [001] direction.
Supporting information
CCDC reference: 298434
Key indicators
- Single-crystal X-ray study
- T = 150 K
- Mean (C-C) = 0.002 Å
- R factor = 0.039
- wR factor = 0.109
- Data-to-parameter ratio = 11.6
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.69 Ratio
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
1 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: CrysAlis CCD (Oxford Diffraction, 2004); cell refinement: CrysAlis RED (Oxford Diffraction, 2004); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: SHELXL97.
3,3,5,5[
2H
4]-4-Methacrylamido-2,2,6,6-tetra([
2H
3]methyl)piperidin-
1-yloxyl
top
Crystal data top
C13H7D16N2O2 | F(000) = 524 |
Mr = 255.44 | Dx = 1.169 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.7107 Å |
Hall symbol: -P 2ybc | Cell parameters from 16217 reflections |
a = 12.0838 (5) Å | θ = 1.0–29.5° |
b = 11.6346 (6) Å | µ = 0.07 mm−1 |
c = 11.5420 (6) Å | T = 150 K |
β = 116.522 (4)° | Irregular, yellow |
V = 1451.92 (13) Å3 | 0.27 × 0.18 × 0.09 mm |
Z = 4 | |
Data collection top
Oxford Sapphire 2 CCD area-detector diffractometer | 2147 reflections with I > 2σ(I) |
Radiation source: sealed tube | Rint = 0.038 |
Graphite monochromator | θmax = 25.4°, θmin = 3.5° |
Detector resolution: 8.3438 pixels mm-1 | h = −14→14 |
ω scans | k = −14→14 |
16217 measured reflections | l = −13→13 |
2632 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.109 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0616P)2] where P = (Fo2 + 2Fc2)/3 |
2632 reflections | (Δ/σ)max = 0.001 |
226 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.19148 (10) | 0.25664 (9) | 0.41034 (10) | 0.0213 (3) | |
C2 | 0.07348 (12) | 0.20618 (11) | 0.30986 (12) | 0.0228 (3) | |
C3 | 0.10042 (13) | 0.13321 (12) | 0.21510 (13) | 0.0227 (3) | |
H3A | 0.1152 (13) | 0.1852 (12) | 0.1556 (13) | 0.025 (4)* | |
H3B | 0.0260 (13) | 0.0871 (12) | 0.1627 (13) | 0.025 (4)* | |
C4 | 0.21217 (12) | 0.05503 (11) | 0.27942 (12) | 0.0214 (3) | |
H4A | 0.2005 (11) | −0.0022 (11) | 0.3360 (11) | 0.013 (3)* | |
C5 | 0.32586 (13) | 0.12779 (12) | 0.35805 (13) | 0.0234 (3) | |
H5A | 0.3985 (13) | 0.0769 (11) | 0.4001 (13) | 0.021 (3)* | |
H5B | 0.3395 (13) | 0.1805 (12) | 0.2988 (13) | 0.025 (4)* | |
C6 | 0.31554 (12) | 0.19942 (11) | 0.46433 (12) | 0.0237 (3) | |
O7 | 0.17835 (9) | 0.33633 (8) | 0.48079 (9) | 0.0307 (3) | |
C8 | 0.01282 (16) | 0.13525 (14) | 0.37832 (16) | 0.0321 (4) | |
H8A | 0.0608 (14) | 0.0651 (13) | 0.4244 (14) | 0.031 (4)* | |
H8B | −0.0667 (16) | 0.1093 (14) | 0.3180 (15) | 0.042 (5)* | |
H8C | 0.0018 (14) | 0.1826 (13) | 0.4454 (15) | 0.036 (4)* | |
C9 | −0.01029 (15) | 0.30642 (13) | 0.23774 (16) | 0.0328 (4) | |
H9A | −0.0859 (16) | 0.2743 (13) | 0.1631 (16) | 0.041 (4)* | |
H9B | 0.0321 (14) | 0.3573 (13) | 0.2027 (14) | 0.033 (4)* | |
H9C | −0.0302 (14) | 0.3522 (13) | 0.2956 (15) | 0.036 (4)* | |
N10 | 0.22804 (11) | −0.01080 (9) | 0.17994 (11) | 0.0259 (3) | |
H10 | 0.2151 (14) | 0.0225 (13) | 0.1112 (15) | 0.036 (4)* | |
C11 | 0.28168 (11) | −0.11508 (11) | 0.20321 (12) | 0.0195 (3) | |
O12 | 0.31476 (9) | −0.16342 (8) | 0.30842 (9) | 0.0280 (3) | |
C13 | 0.29670 (12) | −0.17229 (11) | 0.09358 (12) | 0.0204 (3) | |
C14 | 0.28749 (13) | −0.11195 (12) | −0.01252 (13) | 0.0283 (3) | |
H14A | 0.2990 | −0.1493 | −0.0776 | 0.042* | |
H14B | 0.2698 | −0.0337 | −0.0194 | 0.042* | |
C15 | 0.32418 (15) | −0.29466 (12) | 0.10982 (14) | 0.0321 (4) | |
H15A | 0.3284 | −0.3241 | 0.0342 | 0.048* | |
H15B | 0.2602 | −0.3340 | 0.1218 | 0.048* | |
H15C | 0.4021 | −0.3066 | 0.1843 | 0.048* | |
C16 | 0.33133 (17) | 0.12413 (14) | 0.57972 (15) | 0.0339 (4) | |
H16A | 0.2732 (14) | 0.0562 (13) | 0.5517 (14) | 0.035 (4)* | |
H16B | 0.4186 (17) | 0.0988 (14) | 0.6224 (16) | 0.046 (5)* | |
H16C | 0.3134 (16) | 0.1669 (14) | 0.6408 (16) | 0.046 (5)* | |
C17 | 0.41298 (15) | 0.29402 (14) | 0.50904 (17) | 0.0338 (4) | |
H17A | 0.4935 (16) | 0.2575 (13) | 0.5372 (15) | 0.039 (4)* | |
H17B | 0.3977 (13) | 0.3451 (12) | 0.4338 (14) | 0.027 (4)* | |
H17C | 0.4050 (14) | 0.3405 (13) | 0.5777 (15) | 0.035 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0273 (6) | 0.0161 (6) | 0.0237 (6) | −0.0014 (4) | 0.0141 (5) | −0.0053 (4) |
C2 | 0.0232 (7) | 0.0204 (7) | 0.0254 (7) | −0.0018 (5) | 0.0115 (6) | −0.0046 (5) |
C3 | 0.0279 (8) | 0.0194 (7) | 0.0207 (7) | 0.0008 (6) | 0.0109 (6) | −0.0019 (6) |
C4 | 0.0332 (8) | 0.0167 (7) | 0.0187 (7) | 0.0031 (6) | 0.0156 (6) | 0.0008 (5) |
C5 | 0.0276 (8) | 0.0210 (7) | 0.0245 (7) | 0.0051 (6) | 0.0143 (6) | 0.0024 (6) |
C6 | 0.0255 (8) | 0.0205 (7) | 0.0229 (7) | 0.0020 (5) | 0.0087 (6) | −0.0017 (5) |
O7 | 0.0372 (6) | 0.0235 (5) | 0.0379 (6) | −0.0041 (4) | 0.0225 (5) | −0.0149 (4) |
C8 | 0.0350 (9) | 0.0320 (9) | 0.0376 (9) | −0.0099 (7) | 0.0235 (8) | −0.0108 (7) |
C9 | 0.0305 (9) | 0.0278 (8) | 0.0376 (9) | 0.0060 (7) | 0.0129 (8) | −0.0053 (7) |
N10 | 0.0460 (8) | 0.0176 (6) | 0.0190 (6) | 0.0079 (5) | 0.0189 (5) | 0.0036 (5) |
C11 | 0.0217 (7) | 0.0169 (7) | 0.0211 (7) | −0.0002 (5) | 0.0108 (6) | 0.0003 (5) |
O12 | 0.0402 (6) | 0.0248 (5) | 0.0224 (5) | 0.0106 (4) | 0.0169 (4) | 0.0056 (4) |
C13 | 0.0218 (7) | 0.0190 (7) | 0.0213 (7) | −0.0002 (5) | 0.0105 (6) | −0.0025 (5) |
C14 | 0.0401 (9) | 0.0245 (7) | 0.0255 (7) | 0.0043 (6) | 0.0193 (7) | −0.0037 (6) |
C15 | 0.0434 (9) | 0.0260 (8) | 0.0316 (8) | 0.0065 (6) | 0.0210 (7) | −0.0021 (6) |
C16 | 0.0496 (11) | 0.0277 (8) | 0.0228 (8) | 0.0039 (8) | 0.0148 (8) | −0.0011 (6) |
C17 | 0.0266 (9) | 0.0290 (8) | 0.0402 (9) | −0.0013 (6) | 0.0098 (7) | −0.0051 (7) |
Geometric parameters (Å, º) top
N1—O7 | 1.289 (1) | C9—H9A | 1.007 (17) |
N1—C2 | 1.499 (2) | C9—H9B | 0.981 (16) |
N1—C6 | 1.498 (2) | C9—H9C | 0.965 (16) |
C2—C9 | 1.525 (2) | N10—C11 | 1.345 (2) |
C2—C3 | 1.530 (2) | N10—H10 | 0.833 (16) |
C2—C8 | 1.536 (2) | C11—O12 | 1.232 (1) |
C3—C4 | 1.519 (2) | C11—C13 | 1.511 (2) |
C3—H3A | 0.989 (14) | C13—C14 | 1.372 (2) |
C3—H3B | 0.988 (14) | C13—C15 | 1.455 (1) |
C4—N10 | 1.462 (2) | C14—H14A | 0.9300 |
C4—C5 | 1.521 (2) | C14—H14B | 0.9300 |
C4—H4A | 0.986 (12) | C15—H15A | 0.9600 |
C5—C6 | 1.533 (2) | C15—H15B | 0.9600 |
C5—H5A | 0.989 (19) | C15—H15C | 0.9600 |
C5—H5B | 0.986 (14) | C16—H16A | 1.010 (16) |
C6—C17 | 1.524 (2) | C16—H16B | 0.989 (18) |
C6—C16 | 1.533 (2) | C16—H16C | 0.963 (17) |
C8—H8A | 1.005 (15) | C17—H17A | 0.975 (17) |
C8—H8B | 0.949 (17) | C17—H17B | 0.999 (14) |
C8—H8C | 1.006 (16) | C17—H17C | 0.999 (16) |
| | | |
O7—N1—C2 | 115.3 (1) | H8B—C8—H8C | 107.5 (13) |
O7—N1—C6 | 116.1 (1) | C2—C9—H9A | 108.1 (9) |
C2—N1—C6 | 125.3 (1) | C2—C9—H9B | 110.2 (9) |
N1—C2—C9 | 107.0 (1) | H9A—C9—H9B | 108.3 (13) |
N1—C2—C3 | 109.8 (1) | C2—C9—H9C | 110.8 (9) |
C9—C2—C3 | 109.6 (1) | H9A—C9—H9C | 112.6 (13) |
N1—C2—C8 | 108.7 (1) | H9B—C9—H9C | 106.9 (12) |
C9—C2—C8 | 109.8 (1) | C11—N10—C4 | 122.4 (1) |
C3—C2—C8 | 111.9 (1) | C11—N10—H10 | 118.6 (11) |
C4—C3—C2 | 114.2 (1) | C4—N10—H10 | 118.0 (11) |
C4—C3—H3A | 108.0 (8) | O12—C11—N10 | 121.6 (1) |
C2—C3—H3A | 108.6 (8) | O12—C11—C13 | 121.1 (1) |
C4—C3—H3B | 110.0 (8) | N10—C11—C13 | 117.2 (1) |
C2—C3—H3B | 108.2 (8) | C14—C13—C15 | 122.6 (1) |
H3A—C3—H3B | 107.7 (11) | C14—C13—C11 | 122.0 (1) |
N10—C4—C3 | 109.2 (1) | C15—C13—C11 | 115.4 (1) |
N10—C4—C5 | 111.1 (1) | C13—C14—H14A | 120.0 |
C3—C4—C5 | 109.1 (1) | C13—C14—H14B | 120.0 |
N10—C4—H4A | 105.9 (7) | H14A—C14—H14B | 120.0 |
C3—C4—H4A | 111.7 (7) | C13—C15—H15A | 109.5 |
C5—C4—H4A | 109.8 (7) | C13—C15—H15B | 109.5 |
C4—C5—C6 | 113.91 (11) | H15A—C15—H15B | 109.5 |
C4—C5—H5A | 109.1 (8) | C13—C15—H15C | 109.5 |
C6—C5—H5A | 107.8 (8) | H15A—C15—H15C | 109.5 |
C4—C5—H5B | 108.6 (8) | H15B—C15—H15C | 109.5 |
C6—C5—H5B | 108.4 (8) | C6—C16—H16A | 111.7 (8) |
H5A—C5—H5B | 109.0 (11) | C6—C16—H16B | 107.1 (9) |
N1—C6—C17 | 107.4 (1) | H16A—C16—H16B | 111.2 (13) |
N1—C6—C5 | 109.4 (1) | C6—C16—H16C | 111.1 (10) |
C17—C6—C5 | 109.7 (1) | H16A—C16—H16C | 106.7 (13) |
N1—C6—C16 | 109.2 (1) | H16B—C16—H16C | 109.1 (14) |
C17—C6—C16 | 109.9 (1) | C6—C17—H17A | 107.7 (9) |
C5—C6—C16 | 111.2 (1) | C6—C17—H17B | 108.7 (8) |
C2—C8—H8A | 114.4 (8) | H17A—C17—H17B | 108.5 (12) |
C2—C8—H8B | 110.6 (10) | C6—C17—H17C | 109.0 (9) |
H8A—C8—H8B | 106.6 (13) | H17A—C17—H17C | 114.0 (12) |
C2—C8—H8C | 111.1 (9) | H17B—C17—H17C | 108.8 (11) |
H8A—C8—H8C | 106.3 (12) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···O7i | 0.99 (1) | 2.47 (2) | 3.256 (2) | 136 (1) |
N10—H10···O7i | 0.83 (2) | 2.14 (2) | 2.921 (1) | 157 (1) |
C14—H14B···O7i | 0.93 | 2.55 | 3.455 (1) | 165 |
C17—H17A···O12ii | 0.97 (2) | 2.46 (1) | 3.373 (2) | 156 (1) |
C15—H15A···O12iii | 0.96 | 2.54 | 3.464 (2) | 161 |
C14—H14A···O12iii | 0.93 | 2.59 | 3.438 (2) | 151 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+1, −y, −z+1; (iii) x, −y−1/2, z−1/2. |
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