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The title compound, C
18H
19N
5O
7S, can be considered as a synthetic analogue of nucleosides. The molecule displays an
anti conformation. The occurrence of N—H
O hydrogen bonds results in the formation of centrosymmetric dimers. The crystal packing is characterized by π–π stacking interactions between the purine systems.
Supporting information
CCDC reference: 287552
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.004 Å
- R factor = 0.056
- wR factor = 0.129
- Data-to-parameter ratio = 16.1
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
1 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
4-Toluenesulfonylchloride (0.25 g, 1.3 mmol) was added at 273 K to a solution containing 9-(2-acetoxyethoxymethyl)-2-(N,N-dimethylimidoformamido)-6-oxopurine (0.16 g, 0.5 mmol), DMAP (Please define; 15.3 mg, 0.13 mmol), NEt3 (0.19 g, 1.85 mmol) and dichloromethane (10 ml). After the mixture had been allowed to reach ambient temperature, stirring was continued for 4 h. It was then washed with aqueous NaHCO3 (1 × 2 ml) and water (2 × 2 ml). The organic layer was dried (MgSO4) and evaporated under reduced pressure. The residue was dissolved in dichloromethane and subjected to column chromatography (silica gel, CH2Cl2–EtOH 100:1), and crystallized from ethanol (yield 0.29 g, 79%; m.p. 436–438 K). Spectroscopic analysis: 1H NMR (200 MHz, DMSO-d6, δ): 11.26 (d, 1H, J = 10.3 Hz, NH), 9.08 (d, 1H, J = 10.3 Hz, CH), 8.58 (s, 1H, CH), 8.09 (d, 2H, C6H4), 7.51 (d, 2H, C6H4), 5.59 (s, 2H, NCH2), 4.09–4.01 (m, 2H, CH2), 3.75–3.68 (m, 2H, CH2), 2.43 (s, 3H, CH3), 1.88 (s, 3H, OAc). Analysis calculated for C18H19N5O7S: C 48.10, H 4.26, N 15.58%: found: C 48.47, H 4.31, N 15.73%. Crystals of (I) suitable for X-ray structure analysis were obtained by slow evaporation from an EtOH–H2O (2:1) solution at room temperature.
All H atoms were introduced in calculated positions and treated as riding atoms, with C—H distances of 0.93 (aromatic), 0.96 (methyl) and 0.97 Å (CH2), and N—H = 0.86 Å, with Uiso(H)= 1.2Ueq(aromatic C, CH2 or N) and 1.5Ueq(methyl C).
Data collection: KappaCCD Server Software (Nonius, 1999); cell refinement: HKL SCALEPACK (Otwinowski & Minor 1997); data reduction: DENZO and SCALEPAK (Otwinowski & Minor, 1997); program(s) used to solve structure: DIRDIF96 (Beurskens et al., 1996); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and PLATON (Spek, 2003); software used to prepare material for publication: maXus (Mackay et al., 1999) and SHELXL97.
9-(2-Acetoxyethoxymethyl)-2-formamido-6-(4-toluenesulfonyl)oxypurine
top
Crystal data top
C18H19N5O7S | F(000) = 936 |
Mr = 449.44 | Dx = 1.486 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4435 reflections |
a = 10.4397 (3) Å | θ = 1.0–27.5° |
b = 10.8046 (3) Å | µ = 0.21 mm−1 |
c = 17.8259 (7) Å | T = 293 K |
β = 92.5932 (12)° | Needle, colourless |
V = 2008.65 (11) Å3 | 0.31 × 0.08 × 0.07 mm |
Z = 4 | |
Data collection top
Nonius KappaCCD area-detector diffractometer | Rint = 0.036 |
Radiation source: fine-focus sealed tube | θmax = 27.5° |
ϕ and ω scans | h = −13→13 |
8435 measured reflections | k = −12→13 |
4539 independent reflections | l = −23→23 |
3215 reflections with I > 2σ(I) | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.13 | w = 1/[σ2(Fo2) + (0.0341P)2 + 1.0912P] where P = (Fo2 + 2Fc2)/3 |
4539 reflections | (Δ/σ)max = 0.001 |
282 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
Crystal data top
C18H19N5O7S | V = 2008.65 (11) Å3 |
Mr = 449.44 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.4397 (3) Å | µ = 0.21 mm−1 |
b = 10.8046 (3) Å | T = 293 K |
c = 17.8259 (7) Å | 0.31 × 0.08 × 0.07 mm |
β = 92.5932 (12)° | |
Data collection top
Nonius KappaCCD area-detector diffractometer | 3215 reflections with I > 2σ(I) |
8435 measured reflections | Rint = 0.036 |
4539 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.13 | Δρmax = 0.22 e Å−3 |
4539 reflections | Δρmin = −0.26 e Å−3 |
282 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S14 | 0.55890 (6) | 0.68629 (6) | 0.39233 (4) | 0.0506 (2) | |
N3 | 1.05770 (17) | 0.63145 (16) | 0.43073 (10) | 0.0361 (4) | |
O25 | 1.24505 (17) | 0.42047 (16) | 0.30720 (10) | 0.0523 (5) | |
O13 | 0.66492 (15) | 0.57651 (14) | 0.40495 (11) | 0.0492 (4) | |
O28 | 1.43384 (17) | 0.35773 (16) | 0.20441 (10) | 0.0526 (4) | |
O12 | 1.16224 (17) | 0.95714 (15) | 0.52254 (11) | 0.0548 (5) | |
N7 | 0.8559 (2) | 0.38003 (17) | 0.36786 (12) | 0.0458 (5) | |
N1 | 0.83974 (18) | 0.70322 (16) | 0.43803 (11) | 0.0396 (4) | |
N9 | 1.06760 (18) | 0.41967 (16) | 0.38531 (11) | 0.0406 (4) | |
N10 | 1.00882 (18) | 0.82823 (17) | 0.47505 (11) | 0.0408 (5) | |
H10 | 0.9522 | 0.8856 | 0.4779 | 0.049* | |
O30 | 1.4215 (2) | 0.5537 (2) | 0.16451 (14) | 0.0794 (7) | |
C4 | 1.0053 (2) | 0.52569 (19) | 0.40496 (12) | 0.0344 (5) | |
O15 | 0.44770 (18) | 0.6167 (2) | 0.37159 (13) | 0.0698 (6) | |
O16 | 0.6090 (2) | 0.77441 (19) | 0.34273 (12) | 0.0670 (6) | |
C2 | 0.9682 (2) | 0.71425 (19) | 0.44615 (13) | 0.0360 (5) | |
C8 | 0.9720 (2) | 0.3373 (2) | 0.36364 (14) | 0.0467 (6) | |
H8 | 0.9891 | 0.2575 | 0.3473 | 0.056* | |
C22 | 0.6035 (2) | 0.8581 (2) | 0.50152 (17) | 0.0514 (6) | |
H22 | 0.6576 | 0.8966 | 0.4687 | 0.062* | |
C11 | 1.1299 (2) | 0.8557 (2) | 0.49892 (14) | 0.0438 (6) | |
H11 | 1.1918 | 0.7939 | 0.4972 | 0.053* | |
C5 | 0.8751 (2) | 0.50019 (19) | 0.39418 (13) | 0.0369 (5) | |
C6 | 0.7953 (2) | 0.5964 (2) | 0.41197 (13) | 0.0385 (5) | |
C21 | 0.5839 (3) | 0.9083 (2) | 0.57099 (18) | 0.0573 (7) | |
H21 | 0.6262 | 0.9811 | 0.5850 | 0.069* | |
C17 | 0.5415 (2) | 0.7494 (2) | 0.48142 (16) | 0.0455 (6) | |
C26 | 1.2329 (3) | 0.3137 (3) | 0.26141 (16) | 0.0533 (6) | |
H26A | 1.1431 | 0.2947 | 0.2508 | 0.064* | |
H26B | 1.2729 | 0.2433 | 0.2869 | 0.064* | |
C20 | 0.5025 (3) | 0.8534 (2) | 0.62082 (17) | 0.0556 (7) | |
C18 | 0.4610 (3) | 0.6914 (3) | 0.53024 (18) | 0.0598 (7) | |
H18 | 0.4202 | 0.6178 | 0.5166 | 0.072* | |
C29 | 1.4836 (3) | 0.4699 (3) | 0.19077 (16) | 0.0538 (7) | |
C19 | 0.4423 (3) | 0.7442 (3) | 0.59913 (19) | 0.0665 (8) | |
H19 | 0.3879 | 0.7056 | 0.6318 | 0.080* | |
C27 | 1.2982 (3) | 0.3398 (3) | 0.18940 (16) | 0.0590 (7) | |
H27A | 1.2844 | 0.2711 | 0.1550 | 0.071* | |
H27B | 1.2614 | 0.4135 | 0.1660 | 0.071* | |
C24 | 1.2059 (2) | 0.4027 (2) | 0.38036 (14) | 0.0479 (6) | |
H24A | 1.2505 | 0.4609 | 0.4137 | 0.057* | |
H24B | 1.2289 | 0.3197 | 0.3968 | 0.057* | |
C23 | 0.4792 (4) | 0.9119 (3) | 0.6961 (2) | 0.0776 (9) | |
H23A | 0.4277 | 0.8574 | 0.7248 | 0.116* | |
H23B | 0.4352 | 0.9892 | 0.6884 | 0.116* | |
H23C | 0.5598 | 0.9261 | 0.7227 | 0.116* | |
C31 | 1.6233 (3) | 0.4727 (3) | 0.2095 (2) | 0.0732 (9) | |
H31A | 1.6531 | 0.5567 | 0.2087 | 0.110* | |
H31B | 1.6673 | 0.4248 | 0.1733 | 0.110* | |
H31C | 1.6399 | 0.4384 | 0.2587 | 0.110* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S14 | 0.0394 (3) | 0.0482 (4) | 0.0632 (4) | −0.0016 (3) | −0.0079 (3) | −0.0005 (3) |
N3 | 0.0369 (10) | 0.0326 (9) | 0.0388 (11) | −0.0047 (7) | 0.0026 (8) | −0.0014 (8) |
O25 | 0.0519 (11) | 0.0483 (10) | 0.0577 (11) | −0.0042 (8) | 0.0136 (9) | −0.0107 (8) |
O13 | 0.0346 (9) | 0.0385 (9) | 0.0746 (12) | −0.0058 (7) | 0.0020 (8) | −0.0050 (8) |
O28 | 0.0502 (10) | 0.0513 (10) | 0.0569 (11) | 0.0032 (8) | 0.0109 (8) | 0.0041 (8) |
O12 | 0.0498 (10) | 0.0421 (10) | 0.0722 (13) | −0.0128 (8) | −0.0011 (9) | −0.0115 (9) |
N7 | 0.0466 (12) | 0.0347 (10) | 0.0566 (13) | −0.0090 (9) | 0.0083 (10) | −0.0074 (9) |
N1 | 0.0354 (10) | 0.0344 (10) | 0.0494 (12) | −0.0029 (8) | 0.0044 (8) | −0.0013 (8) |
N9 | 0.0425 (11) | 0.0332 (9) | 0.0465 (12) | −0.0004 (8) | 0.0061 (9) | −0.0028 (8) |
N10 | 0.0394 (11) | 0.0319 (9) | 0.0511 (12) | −0.0042 (8) | 0.0025 (9) | −0.0065 (8) |
O30 | 0.0832 (16) | 0.0523 (12) | 0.1022 (18) | 0.0074 (11) | 0.0002 (13) | 0.0137 (12) |
C4 | 0.0381 (12) | 0.0331 (11) | 0.0323 (11) | −0.0021 (9) | 0.0058 (9) | 0.0019 (9) |
O15 | 0.0430 (11) | 0.0746 (13) | 0.0901 (16) | −0.0087 (9) | −0.0172 (10) | −0.0156 (11) |
O16 | 0.0708 (13) | 0.0638 (12) | 0.0658 (13) | −0.0003 (10) | −0.0031 (10) | 0.0128 (10) |
C2 | 0.0384 (12) | 0.0320 (11) | 0.0381 (12) | −0.0042 (9) | 0.0057 (9) | 0.0002 (9) |
C8 | 0.0537 (15) | 0.0345 (12) | 0.0526 (15) | −0.0063 (10) | 0.0108 (12) | −0.0052 (10) |
C22 | 0.0408 (14) | 0.0410 (13) | 0.0724 (19) | −0.0064 (10) | 0.0034 (12) | 0.0033 (12) |
C11 | 0.0440 (14) | 0.0371 (12) | 0.0505 (14) | −0.0068 (10) | 0.0053 (11) | −0.0019 (10) |
C5 | 0.0386 (12) | 0.0322 (11) | 0.0401 (12) | −0.0056 (9) | 0.0036 (9) | −0.0004 (9) |
C6 | 0.0358 (12) | 0.0370 (12) | 0.0428 (13) | −0.0062 (9) | 0.0034 (10) | 0.0025 (9) |
C21 | 0.0514 (16) | 0.0432 (14) | 0.077 (2) | −0.0048 (12) | 0.0004 (14) | −0.0073 (13) |
C17 | 0.0324 (12) | 0.0375 (12) | 0.0661 (17) | 0.0008 (9) | −0.0026 (11) | 0.0003 (11) |
C26 | 0.0498 (15) | 0.0529 (15) | 0.0577 (16) | −0.0057 (12) | 0.0083 (12) | −0.0093 (12) |
C20 | 0.0460 (15) | 0.0495 (15) | 0.0711 (19) | 0.0112 (12) | 0.0000 (13) | 0.0015 (13) |
C18 | 0.0532 (16) | 0.0461 (14) | 0.080 (2) | −0.0163 (12) | 0.0061 (15) | −0.0018 (14) |
C29 | 0.0627 (17) | 0.0498 (15) | 0.0497 (16) | 0.0016 (13) | 0.0112 (13) | −0.0026 (12) |
C19 | 0.0610 (19) | 0.0642 (18) | 0.076 (2) | −0.0102 (14) | 0.0183 (16) | 0.0060 (16) |
C27 | 0.0508 (16) | 0.0748 (19) | 0.0517 (16) | −0.0028 (14) | 0.0056 (13) | −0.0055 (14) |
C24 | 0.0438 (14) | 0.0519 (14) | 0.0480 (15) | 0.0062 (11) | 0.0014 (11) | −0.0068 (11) |
C23 | 0.084 (2) | 0.073 (2) | 0.076 (2) | 0.0162 (18) | 0.0094 (18) | −0.0101 (17) |
C31 | 0.0613 (19) | 0.086 (2) | 0.072 (2) | −0.0131 (17) | 0.0022 (16) | 0.0008 (17) |
Geometric parameters (Å, º) top
S14—O16 | 1.416 (2) | C22—C17 | 1.380 (3) |
S14—O15 | 1.4180 (19) | C22—H22 | 0.9300 |
S14—O13 | 1.6310 (17) | C11—H11 | 0.9300 |
S14—C17 | 1.745 (3) | C5—C6 | 1.379 (3) |
N3—C2 | 1.331 (3) | C21—C20 | 1.389 (4) |
N3—C4 | 1.339 (3) | C21—H21 | 0.9300 |
O25—C24 | 1.398 (3) | C17—C18 | 1.387 (4) |
O25—C26 | 1.416 (3) | C26—C27 | 1.507 (4) |
O13—C6 | 1.378 (3) | C26—H26A | 0.9700 |
O28—C29 | 1.345 (3) | C26—H26B | 0.9700 |
O28—C27 | 1.442 (3) | C20—C19 | 1.384 (4) |
O12—C11 | 1.217 (3) | C20—C23 | 1.512 (4) |
N7—C8 | 1.302 (3) | C18—C19 | 1.376 (4) |
N7—C5 | 1.392 (3) | C18—H18 | 0.9300 |
N1—C6 | 1.321 (3) | C29—C31 | 1.481 (4) |
N1—C2 | 1.348 (3) | C19—H19 | 0.9300 |
N9—C4 | 1.371 (3) | C27—H27A | 0.9700 |
N9—C8 | 1.379 (3) | C27—H27B | 0.9700 |
N9—C24 | 1.462 (3) | C24—H24A | 0.9700 |
N10—C11 | 1.348 (3) | C24—H24B | 0.9700 |
N10—C2 | 1.393 (3) | C23—H23A | 0.9600 |
N10—H10 | 0.8600 | C23—H23B | 0.9600 |
O30—C29 | 1.197 (3) | C23—H23C | 0.9600 |
C4—C5 | 1.391 (3) | C31—H31A | 0.9600 |
C8—H8 | 0.9300 | C31—H31B | 0.9600 |
C22—C21 | 1.376 (4) | C31—H31C | 0.9600 |
| | | |
O16—S14—O15 | 121.01 (14) | C18—C17—S14 | 119.0 (2) |
O16—S14—O13 | 107.91 (11) | O25—C26—C27 | 107.8 (2) |
O15—S14—O13 | 101.12 (11) | O25—C26—H26A | 110.1 |
O16—S14—C17 | 111.22 (12) | C27—C26—H26A | 110.1 |
O15—S14—C17 | 109.08 (13) | O25—C26—H26B | 110.1 |
O13—S14—C17 | 104.86 (11) | C27—C26—H26B | 110.1 |
C2—N3—C4 | 111.39 (18) | H26A—C26—H26B | 108.5 |
C24—O25—C26 | 113.80 (19) | C19—C20—C21 | 117.9 (3) |
C6—O13—S14 | 124.08 (14) | C19—C20—C23 | 121.0 (3) |
C29—O28—C27 | 118.1 (2) | C21—C20—C23 | 121.1 (3) |
C8—N7—C5 | 103.31 (19) | C19—C18—C17 | 119.2 (3) |
C6—N1—C2 | 116.58 (19) | C19—C18—H18 | 120.4 |
C4—N9—C8 | 105.38 (19) | C17—C18—H18 | 120.4 |
C4—N9—C24 | 126.99 (19) | O30—C29—O28 | 123.0 (3) |
C8—N9—C24 | 127.3 (2) | O30—C29—C31 | 125.7 (3) |
C11—N10—C2 | 125.2 (2) | O28—C29—C31 | 111.2 (3) |
C11—N10—H10 | 117.4 | C18—C19—C20 | 121.4 (3) |
C2—N10—H10 | 117.4 | C18—C19—H19 | 119.3 |
N3—C4—N9 | 127.6 (2) | C20—C19—H19 | 119.3 |
N3—C4—C5 | 126.7 (2) | O28—C27—C26 | 110.2 (2) |
N9—C4—C5 | 105.73 (18) | O28—C27—H27A | 109.6 |
N3—C2—N1 | 128.51 (19) | C26—C27—H27A | 109.6 |
N3—C2—N10 | 117.76 (19) | O28—C27—H27B | 109.6 |
N1—C2—N10 | 113.73 (19) | C26—C27—H27B | 109.6 |
N7—C8—N9 | 114.7 (2) | H27A—C27—H27B | 108.1 |
N7—C8—H8 | 122.6 | O25—C24—N9 | 111.8 (2) |
N9—C8—H8 | 122.6 | O25—C24—H24A | 109.3 |
C21—C22—C17 | 118.8 (3) | N9—C24—H24A | 109.3 |
C21—C22—H22 | 120.6 | O25—C24—H24B | 109.3 |
C17—C22—H22 | 120.6 | N9—C24—H24B | 109.3 |
O12—C11—N10 | 123.3 (2) | H24A—C24—H24B | 107.9 |
O12—C11—H11 | 118.4 | C20—C23—H23A | 109.5 |
N10—C11—H11 | 118.4 | C20—C23—H23B | 109.5 |
C6—C5—C4 | 114.58 (19) | H23A—C23—H23B | 109.5 |
C6—C5—N7 | 134.6 (2) | C20—C23—H23C | 109.5 |
C4—C5—N7 | 110.85 (19) | H23A—C23—H23C | 109.5 |
N1—C6—O13 | 119.9 (2) | H23B—C23—H23C | 109.5 |
N1—C6—C5 | 122.2 (2) | C29—C31—H31A | 109.5 |
O13—C6—C5 | 117.81 (19) | C29—C31—H31B | 109.5 |
C22—C21—C20 | 121.8 (3) | H31A—C31—H31B | 109.5 |
C22—C21—H21 | 119.1 | C29—C31—H31C | 109.5 |
C20—C21—H21 | 119.1 | H31A—C31—H31C | 109.5 |
C22—C17—C18 | 120.8 (3) | H31B—C31—H31C | 109.5 |
C22—C17—S14 | 120.1 (2) | | |
| | | |
N1—C2—N10—C11 | 169.5 (2) | C8—N9—C24—O25 | 77.6 (3) |
C2—N10—C11—O12 | 178.6 (2) | N9—C24—O25—C26 | −84.9 (3) |
C6—O13—S14—O15 | 167.0 (2) | C24—O25—C26—C27 | −170.8 (2) |
C6—O13—S14—O16 | 39.0 (2) | O25—C26—C27—O28 | 64.6 (3) |
C6—O13—S14—C17 | −79.6 (2) | C26—C27—O28—C29 | −115.3 (3) |
O13—S14—C17—C18 | −82.3 (2) | C27—O28—C29—O30 | −2.6 (4) |
O13—S14—C17—C22 | 100.1 (2) | C27—O28—C29—C31 | 179.7 (2) |
C4—N9—C24—O25 | −94.9 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···O12i | 0.86 | 2.08 | 2.928 (3) | 171 |
Symmetry code: (i) −x+2, −y+2, −z+1. |
Experimental details
Crystal data |
Chemical formula | C18H19N5O7S |
Mr | 449.44 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.4397 (3), 10.8046 (3), 17.8259 (7) |
β (°) | 92.5932 (12) |
V (Å3) | 2008.65 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.31 × 0.08 × 0.07 |
|
Data collection |
Diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8435, 4539, 3215 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.649 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.129, 1.13 |
No. of reflections | 4539 |
No. of parameters | 282 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.26 |
Selected torsion angles (º) topN1—C2—N10—C11 | 169.5 (2) | C8—N9—C24—O25 | 77.6 (3) |
C2—N10—C11—O12 | 178.6 (2) | N9—C24—O25—C26 | −84.9 (3) |
C6—O13—S14—O15 | 167.0 (2) | C24—O25—C26—C27 | −170.8 (2) |
C6—O13—S14—O16 | 39.0 (2) | O25—C26—C27—O28 | 64.6 (3) |
C6—O13—S14—C17 | −79.6 (2) | C26—C27—O28—C29 | −115.3 (3) |
O13—S14—C17—C18 | −82.3 (2) | C27—O28—C29—O30 | −2.6 (4) |
O13—S14—C17—C22 | 100.1 (2) | C27—O28—C29—C31 | 179.7 (2) |
C4—N9—C24—O25 | −94.9 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···O12i | 0.86 | 2.08 | 2.928 (3) | 171 |
Symmetry code: (i) −x+2, −y+2, −z+1. |
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The present crystallographic analysis of the title compound, (I), extends our ongoing investigation of the synthesis of C-6 aryl purine derivatives using the Suzuki–Miyaura reaction, i.e. the Pd-mediated cross-coupling of haloaromatics or aryltriflates with an aryl boronic acid (Miyaura & Suzuki 1995; Suzuki, 1999). This method has led to the development of several biologically active nucleoside analogues, which are generally prepared using 6-chloropurines as substrates (Česnek et al., 2000). Commercially available 6-chloroguanosine derivatives are expensive, but their preparation via chlorination of 6-oxopurines proceeds mostly with low yields. Therefore, the development of O6-tosylated guanine derivatives as alternative substrates for cross-coupling reactions is important (Lakshman et al., 2002). We report here the single-crystal structure of an O6-tosylate derivative, (I), of acyclic guanosine, as a typical example of the class of intermediates synthesized by tosylation of N2-amidine-protected 9-(2-acetoxyethoxymethyl)guanine and related analogues. The chemical structures of O6-tosylates of acyclic guanosine analogues have not been confirmed in the literature by single-crystal X-ray diffraction analysis.
The molecular structure of (I) is shown in Fig. 1. The bond lengths and angles of (I) compare well with those of related compounds extracted from the Cambridge Structural Database (CSD, Version 5.26; Allen, 2002). Only 18 entries containing 9-oxymethylpurine derivatives could be found. Selected torsion angles for (I) are reported in Table 1. The value of 77.1 (3)° observed for C8—N9—C24—O25 indicates that the purine system exhibits the anti conformation across the pseudo-glycosidic bond.
The packing of the molecules in the crystal structure of (I) viewed down the a axis is shown in Fig. 2. Intermolecular N—H···O hydrogen bonds result in the formation of centrosymmetric dimers. Slipped π–π stacking interactions are observed between purine systems related by an inversion centre (Fig. 2). The distance between the planes of these overlaped purine fragments is 3.358 (3) Å, whereas the centroid-to-centroid distance is 3.658 Å [symmetry code: −x + 2, −y + 1, −z + 1].