Buy article online - an online subscription or single-article purchase is required to access this article.
In the title compound, C9H13NO5, the N-methoxy group adopts a conformation almost at right angles to the least-squares mean plane through the other two nitrogen substituents, in a direction opposite to that of the axial methyl substituent on the ring of the Meldrum's acid (2,2-dimethyl-1,3-dioxane-4,6-dione) moiety. There is an indication, at the limits of precision, that delocalization of the N-atom lone pair into the Meldrum's acid ring may be favoured in the direction of one of the two carbonyl groups. The structure is otherwise very similar to that of previously reported 2,2-dimethyl-5-(N,N-dimethylaminomethylene)-1,3-dioxane-4,6-dione [Blake et al. (1991). J. Chem. Soc. Perkin Trans. 2, pp. 2003-2010].
Supporting information
CCDC reference: 214841
Key indicators
- Single-crystal X-ray study
- T = 150 K
- Mean (C-C) = 0.004 Å
- R factor = 0.043
- wR factor = 0.119
- Data-to-parameter ratio = 11.3
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
Alert Level B:
REFLT_03
From the CIF: _diffrn_reflns_theta_max 24.97
From the CIF: _reflns_number_total 1580
TEST2: Reflns within _diffrn_reflns_theta_max
Count of symmetry unique reflns 1828
Completeness (_total/calc) 86.43%
Alert B: < 90% complete (theta max?)
0 Alert Level A = Potentially serious problem
1 Alert Level B = Potential problem
0 Alert Level C = Please check
The title compound was made by treatment of N,O-dimethylhydroxylamine hydrochloride with methoxymethylene Meldrum's acid in acetonitrile solution, in the presence of triethylamine (McNab & Withell, 2000). Crystals were grown from an ethanol solution.
All H atoms were located from a ΔF synthesis, but they were included at geometrically calculated positions. From methyl H atoms C—H was fixed at 0.98 Å; for the remaining atom this distance was 0.95 Å, and Uiso(H) = xUeq(C), with x = 1.5 for methyl H atoms and 1.2 for the other.
Data collection: DIF4 (Stoe & Cie, 1992); cell refinement: DIF4; data reduction: REDU4 (Stoe & Cie, 1992); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2001); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
Crystal data top
C9H13NO5 | Z = 2 |
Mr = 215.20 | F(000) = 228 |
Triclinic, P1 | Dx = 1.379 Mg m−3 |
a = 6.477 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.769 (5) Å | Cell parameters from 14 reflections |
c = 11.675 (12) Å | θ = 5.5–12.3° |
α = 98.04 (7)° | µ = 0.11 mm−1 |
β = 100.50 (7)° | T = 150 K |
γ = 112.71 (5)° | Cube, colourless |
V = 518.4 (7) Å3 | 0.23 × 0.19 × 0.19 mm |
Data collection top
Stoe Stadi-4 four-circle diffractometer | Rint = 0.022 |
Radiation source: fine-focus sealed tube | θmax = 25.0°, θmin = 2.9° |
Graphite monochromator | h = −7→6 |
ω–2θ scans | k = −8→9 |
2066 measured reflections | l = 0→13 |
1580 independent reflections | 3 standard reflections every 60 min |
1259 reflections with I > 2σ(I) | intensity decay: +−12% |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0399P)2 + 0.537P] where P = (Fo2 + 2Fc2)/3 |
1580 reflections | (Δ/σ)max < 0.001 |
140 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
Crystal data top
C9H13NO5 | γ = 112.71 (5)° |
Mr = 215.20 | V = 518.4 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.477 (5) Å | Mo Kα radiation |
b = 7.769 (5) Å | µ = 0.11 mm−1 |
c = 11.675 (12) Å | T = 150 K |
α = 98.04 (7)° | 0.23 × 0.19 × 0.19 mm |
β = 100.50 (7)° | |
Data collection top
Stoe Stadi-4 four-circle diffractometer | Rint = 0.022 |
2066 measured reflections | 3 standard reflections every 60 min |
1580 independent reflections | intensity decay: +−12% |
1259 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.21 e Å−3 |
1580 reflections | Δρmin = −0.24 e Å−3 |
140 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.0150 (3) | 1.2135 (2) | 0.23415 (15) | 0.0270 (4) | |
C2 | −0.0116 (5) | 1.1785 (3) | 0.3508 (2) | 0.0255 (6) | |
C2A | 0.2275 (5) | 1.2909 (4) | 0.4349 (2) | 0.0309 (6) | |
H2A1 | 0.2245 | 1.2676 | 0.5134 | 0.046* | |
H2A2 | 0.2743 | 1.4253 | 0.4389 | 0.046* | |
H2A3 | 0.3355 | 1.2512 | 0.4060 | 0.046* | |
C2B | −0.1916 (5) | 1.2329 (4) | 0.3897 (3) | 0.0341 (7) | |
H2B1 | −0.1941 | 1.2158 | 0.4694 | 0.051* | |
H2B2 | −0.3410 | 1.1528 | 0.3360 | 0.051* | |
H2B3 | −0.1545 | 1.3647 | 0.3886 | 0.051* | |
O3 | −0.0887 (3) | 0.9764 (2) | 0.34389 (16) | 0.0271 (4) | |
C4 | 0.0039 (4) | 0.8786 (4) | 0.2788 (2) | 0.0244 (6) | |
O4 | −0.0448 (3) | 0.7140 (2) | 0.28763 (17) | 0.0328 (5) | |
C5 | 0.1327 (4) | 0.9775 (3) | 0.2019 (2) | 0.0227 (6) | |
C6 | 0.0990 (4) | 1.1398 (3) | 0.1683 (2) | 0.0240 (6) | |
O6 | 0.1558 (3) | 1.2128 (2) | 0.08764 (16) | 0.0315 (5) | |
C7 | 0.2555 (4) | 0.9123 (3) | 0.1341 (2) | 0.0236 (6) | |
H7 | 0.2831 | 0.9702 | 0.0706 | 0.028* | |
N8 | 0.3388 (4) | 0.7853 (3) | 0.14329 (19) | 0.0261 (5) | |
C9 | 0.3595 (5) | 0.6835 (4) | 0.2379 (3) | 0.0319 (6) | |
H9A | 0.2318 | 0.5590 | 0.2164 | 0.048* | |
H9B | 0.3580 | 0.7551 | 0.3116 | 0.048* | |
H9C | 0.5023 | 0.6696 | 0.2480 | 0.048* | |
O10 | 0.4618 (3) | 0.7640 (2) | 0.05947 (17) | 0.0317 (5) | |
C11 | 0.3105 (5) | 0.6064 (4) | −0.0407 (2) | 0.0294 (6) | |
H11A | 0.3958 | 0.5915 | −0.0976 | 0.044* | |
H11B | 0.1842 | 0.6322 | −0.0781 | 0.044* | |
H11C | 0.2510 | 0.4906 | −0.0130 | 0.044* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0348 (10) | 0.0247 (9) | 0.0281 (10) | 0.0194 (8) | 0.0095 (8) | 0.0047 (8) |
C2 | 0.0311 (14) | 0.0195 (13) | 0.0266 (14) | 0.0110 (11) | 0.0101 (12) | 0.0031 (10) |
C2A | 0.0319 (15) | 0.0277 (14) | 0.0299 (15) | 0.0119 (12) | 0.0063 (13) | 0.0014 (12) |
C2B | 0.0347 (16) | 0.0338 (15) | 0.0361 (16) | 0.0176 (13) | 0.0133 (13) | 0.0007 (12) |
O3 | 0.0323 (10) | 0.0213 (9) | 0.0303 (10) | 0.0110 (8) | 0.0154 (8) | 0.0049 (7) |
C4 | 0.0276 (13) | 0.0222 (13) | 0.0237 (13) | 0.0118 (11) | 0.0055 (11) | 0.0040 (10) |
O4 | 0.0404 (11) | 0.0202 (10) | 0.0414 (11) | 0.0120 (8) | 0.0177 (9) | 0.0112 (8) |
C5 | 0.0274 (13) | 0.0170 (12) | 0.0236 (13) | 0.0105 (11) | 0.0052 (11) | 0.0029 (10) |
C6 | 0.0266 (13) | 0.0179 (12) | 0.0256 (14) | 0.0098 (11) | 0.0045 (11) | 0.0005 (10) |
O6 | 0.0471 (12) | 0.0258 (10) | 0.0299 (10) | 0.0192 (9) | 0.0163 (9) | 0.0124 (8) |
C7 | 0.0267 (13) | 0.0169 (12) | 0.0252 (13) | 0.0071 (11) | 0.0073 (11) | 0.0038 (10) |
N8 | 0.0320 (12) | 0.0223 (11) | 0.0288 (12) | 0.0143 (10) | 0.0132 (10) | 0.0047 (9) |
C9 | 0.0355 (15) | 0.0278 (14) | 0.0382 (16) | 0.0175 (12) | 0.0107 (13) | 0.0114 (12) |
O10 | 0.0313 (10) | 0.0287 (10) | 0.0390 (11) | 0.0150 (8) | 0.0176 (9) | 0.0021 (8) |
C11 | 0.0352 (15) | 0.0269 (14) | 0.0300 (15) | 0.0178 (12) | 0.0096 (12) | 0.0034 (11) |
Geometric parameters (Å, º) top
O1—C6 | 1.369 (3) | C5—C7 | 1.394 (3) |
O1—C2 | 1.424 (3) | C5—C6 | 1.453 (4) |
C2—O3 | 1.437 (3) | C6—O6 | 1.208 (3) |
C2—C2B | 1.505 (4) | C7—N8 | 1.302 (3) |
C2—C2A | 1.512 (4) | N8—O10 | 1.400 (3) |
O3—C4 | 1.368 (3) | N8—C9 | 1.462 (4) |
C4—O4 | 1.218 (3) | O10—C11 | 1.443 (4) |
C4—C5 | 1.437 (4) | | |
| | | |
C6—O1—C2 | 117.3 (2) | C7—C5—C4 | 126.2 (2) |
O1—C2—O3 | 109.6 (2) | C7—C5—C6 | 113.1 (2) |
O1—C2—C2B | 105.6 (2) | C4—C5—C6 | 119.3 (2) |
O3—C2—C2B | 106.5 (2) | O6—C6—O1 | 117.1 (2) |
O1—C2—C2A | 111.0 (2) | O6—C6—C5 | 127.1 (2) |
O3—C2—C2A | 111.0 (2) | O1—C6—C5 | 115.7 (2) |
C2B—C2—C2A | 112.8 (2) | N8—C7—C5 | 132.0 (2) |
C4—O3—C2 | 118.43 (19) | C7—N8—O10 | 115.1 (2) |
O4—C4—O3 | 115.9 (2) | C7—N8—C9 | 130.6 (2) |
O4—C4—C5 | 127.8 (2) | O10—N8—C9 | 113.4 (2) |
O3—C4—C5 | 116.1 (2) | N8—O10—C11 | 109.7 (2) |
| | | |
C6—O1—C2—O3 | −52.7 (3) | C2—O1—C6—O6 | −158.7 (2) |
C6—O1—C2—C2B | −167.1 (2) | C2—O1—C6—C5 | 22.9 (3) |
C6—O1—C2—C2A | 70.3 (3) | C7—C5—C6—O6 | 3.5 (4) |
O1—C2—O3—C4 | 47.6 (3) | C4—C5—C6—O6 | −164.0 (3) |
C2B—C2—O3—C4 | 161.4 (2) | C7—C5—C6—O1 | −178.3 (2) |
C2A—C2—O3—C4 | −75.4 (3) | C4—C5—C6—O1 | 14.2 (3) |
C2—O3—C4—O4 | 171.2 (2) | C4—C5—C7—N8 | −20.9 (5) |
C2—O3—C4—C5 | −13.1 (3) | C6—C5—C7—N8 | 172.6 (3) |
O4—C4—C5—C7 | −9.7 (5) | C5—C7—N8—O10 | −177.6 (2) |
O3—C4—C5—C7 | 175.2 (2) | C5—C7—N8—C9 | −9.2 (5) |
O4—C4—C5—C6 | 156.1 (3) | C7—N8—O10—C11 | −95.7 (3) |
O3—C4—C5—C6 | −19.1 (3) | C9—N8—O10—C11 | 93.9 (3) |
Experimental details
Crystal data |
Chemical formula | C9H13NO5 |
Mr | 215.20 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 150 |
a, b, c (Å) | 6.477 (5), 7.769 (5), 11.675 (12) |
α, β, γ (°) | 98.04 (7), 100.50 (7), 112.71 (5) |
V (Å3) | 518.4 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.23 × 0.19 × 0.19 |
|
Data collection |
Diffractometer | Stoe Stadi-4 four-circle diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2066, 1580, 1259 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.594 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.119, 1.12 |
No. of reflections | 1580 |
No. of parameters | 140 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.24 |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
If you have already registered and are using a computer listed in your registration details, please email
support@iucr.org for assistance.
The N-methoxy group N8—O10—C11 in the title compound, (1), adopts a conformation almost at right angles to the C7—N8—C9 plane [the dihedral angle is 89.3 (2)°] in a direction opposite to that of the axial methyl substituent C2a on the Meldrum's acid ring (Fig. 1). The dihedral angle between the C4/C5/C6 and the C7/N8/C9 planes is 26.0 (6)°. By comparison with its N,N-dimethyl analogue, (2) (Blake et al., 1991), the methoxy group has comparatively little structural influence on the molecule as a whole. Thus, many of the values of the corresponding bond lengths and valence angles in (1) and (2) (including C5—C7 and C7—N8) lie within one s.u. of one another and most are within three s.u.'s. The sole significant exception appears to be the bond angles around N8. Thus, in (1), C7—N8—C9 is increased to 130.7 (2)° and C7—N8—O10 reduced to 115.1 (2)° from the corresponding values in (2), which are 123.0 (3) and 121.2 (3)°, respectively. There is an indication, at the limit of the precision of our data, that delocalization of the N7 lone pair into the Meldrum's acid ring may be favoured in the direction of C5—C4—O4. Thus C4—C5 [1.437 (4) Å] displays more double-bond character than C5—C6 [1.452 (4) Å] and C4—O4 [1.218 (3) Å] correspondingly displays more single-bond character than C6—O6 [1.208 (3) Å]. Although this feature was not observed in the structure of (2), we have previously made a similar observation in the structure of the vinylogue (3) (Blake et al., 1991). Interestingly, in this case, the preferred delocalization took place towards the other carbonyl group.