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The title compounds are indole alkaloids of the Iboga class. In both compounds, viz. catharanthinol methanol solvate, C20H24N2O·CH4O, (I), and dihydrocatharanthinol monohydrate, C20H26N2O·H2O, (II), a nitrogen-containing seven-membered ring is fused to the indole system and shares two sides with a tricyclic isoquinuclidine group. The main difference between (I) and (II) is the presence of a C=C bond in the isoquinuclidine ring in (I). The presence of amine and hydroxy groups in these molecules and of methanol [in (I)] or water [in (II)] solvent molecules results in intra- and/or intermolecular hydrogen bonding.
Supporting information
CCDC references: 257011; 257012
Reduction of the ester group of (+)-catharanthine with lithium aluminium hydride gave compound (I), which was recrystallized from methanol. Compound (II) was obtained in two steps from catharanthine, the catalytic hydrogenation of the C15═C20 bond being followed by reduction of the ester group by LiAlH4, as reported in the literature method of Gorman et al. (1965). Crystals of (II) were obtained by recrystallization from diethyl ether.
The amino, hydroxy and water H atoms were found in a difference Fourier map and were introduced as riding atoms, with Uiso(H) = 1.2Ueq(O,N). All other H atoms were introduced in calculated positions as riding atoms, with C—H bond lengths of 0.93 (aromatic CH), 0.98 (aliphatic CH), 0.97 (CH2) and 0.96 Å (CH3), and with Uiso(H) = 1.2Ueq(C) for CH and CH2 and 1.5Ueq(C) for CH3. In the absence of suitable anomalous scatterers, Friedel equivalents could not be used to determine the absolute configuration. Refinement of the Flack parameter (Flack, 1983) led to inconclusive values (Flack & Bernardinelli, 2000) of −1.4 (16) for (I) and −0.1 (14) for (II). Therefore, the 1439 and 1322 Friedel equivalents for (I) and (II), respectively, were merged before the final refinements. The configuration adopted is that of the precursor of both compounds, natural (+)-catharanthine.
For both compounds, data collection: KappaCCD Server Software (Nonius, 1997); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1999); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
(I) catharanthinol methanol solvate
top
Crystal data top
C20H24N2O·CH4O | F(000) = 736 |
Mr = 340.45 | Dx = 1.269 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 13656 reflections |
a = 10.7136 (5) Å | θ = 2.9–25.7° |
b = 12.6846 (8) Å | µ = 0.08 mm−1 |
c = 13.1078 (9) Å | T = 100 K |
V = 1781.32 (19) Å3 | Platelet, colourless |
Z = 4 | 0.24 × 0.20 × 0.08 mm |
Data collection top
Nonius KappaCCD area-detector diffractometer | 1707 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.063 |
Graphite monochromator | θmax = 25.7°, θmin = 2.9° |
ϕ scans | h = 0→13 |
13656 measured reflections | k = 0→15 |
1927 independent reflections | l = 0→15 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.090 | w = 1/[σ2(Fo2) + (0.0305P)2 + 0.7559P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
1927 reflections | Δρmax = 0.19 e Å−3 |
229 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.022 (3) |
Crystal data top
C20H24N2O·CH4O | V = 1781.32 (19) Å3 |
Mr = 340.45 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 10.7136 (5) Å | µ = 0.08 mm−1 |
b = 12.6846 (8) Å | T = 100 K |
c = 13.1078 (9) Å | 0.24 × 0.20 × 0.08 mm |
Data collection top
Nonius KappaCCD area-detector diffractometer | 1707 reflections with I > 2σ(I) |
13656 measured reflections | Rint = 0.063 |
1927 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.19 e Å−3 |
1927 reflections | Δρmin = −0.19 e Å−3 |
229 parameters | |
Special details top
Experimental. The unit-cell parameters have been determined from 10 frames, then refined on all data. The crystal-to-detector distance was fixed to 28 mm. One-half of the diffraction sphere was scanned (90 frames, ϕ scans, 2° by frame). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Structure solved by direct methods and subsequent Fourier-difference synthesis. All non-hydrogen atoms were refined with anisotropic displacement parameters. The H atoms bound to O and N were found on the Fourier-difference map and introduced as riding atoms with an isotropic displacement parameter equal to 1.2 times that of the parent atom. All other atoms were introduced at calculated positions as riding atoms with an isotropic displacement parameter equal to 1.2 (CH, CH2) or 1.5 (CH3) times that of the parent atom. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.6342 (2) | 0.72220 (18) | 0.32211 (16) | 0.0238 (5) | |
H1 | 0.7035 | 0.7625 | 0.3124 | 0.029* | |
O1 | 0.80485 (18) | 0.81010 (16) | 0.20168 (14) | 0.0282 (5) | |
H2 | 0.8384 | 0.8748 | 0.1760 | 0.034* | |
C2 | 0.5922 (3) | 0.6624 (2) | 0.23949 (19) | 0.0221 (6) | |
C3 | 0.6237 (3) | 0.4613 (2) | 0.0557 (2) | 0.0276 (6) | |
H3A | 0.6140 | 0.4062 | 0.0051 | 0.033* | |
H3B | 0.6172 | 0.4297 | 0.1229 | 0.033* | |
N4 | 0.5246 (2) | 0.54254 (17) | 0.04233 (18) | 0.0228 (5) | |
C5 | 0.4109 (3) | 0.5270 (2) | 0.1028 (2) | 0.0262 (6) | |
H5A | 0.3690 | 0.4647 | 0.0769 | 0.031* | |
H5B | 0.3562 | 0.5865 | 0.0901 | 0.031* | |
C6 | 0.4240 (3) | 0.5146 (2) | 0.2179 (2) | 0.0278 (7) | |
H6A | 0.3410 | 0.5113 | 0.2472 | 0.033* | |
H6B | 0.4644 | 0.4476 | 0.2315 | 0.033* | |
C7 | 0.4954 (3) | 0.5988 (2) | 0.2722 (2) | 0.0234 (6) | |
C8 | 0.4772 (2) | 0.6213 (2) | 0.3793 (2) | 0.0226 (6) | |
C9 | 0.3931 (3) | 0.5832 (2) | 0.4522 (2) | 0.0278 (6) | |
H9 | 0.3334 | 0.5332 | 0.4347 | 0.033* | |
C10 | 0.4006 (3) | 0.6217 (2) | 0.5512 (2) | 0.0270 (6) | |
H10 | 0.3453 | 0.5969 | 0.6003 | 0.032* | |
C11 | 0.4904 (3) | 0.6974 (2) | 0.5783 (2) | 0.0252 (6) | |
H11 | 0.4935 | 0.7217 | 0.6452 | 0.030* | |
C12 | 0.5744 (3) | 0.7364 (2) | 0.5076 (2) | 0.0247 (6) | |
H12 | 0.6340 | 0.7863 | 0.5256 | 0.030* | |
C13 | 0.5661 (3) | 0.6979 (2) | 0.4079 (2) | 0.0235 (6) | |
C14 | 0.7520 (3) | 0.5148 (2) | 0.0434 (2) | 0.0257 (6) | |
H14 | 0.8189 | 0.4622 | 0.0400 | 0.031* | |
C15 | 0.7497 (3) | 0.5819 (2) | −0.0516 (2) | 0.0256 (6) | |
H15 | 0.8053 | 0.5726 | −0.1054 | 0.031* | |
C16 | 0.6625 (2) | 0.6724 (2) | 0.1392 (2) | 0.0219 (6) | |
C17 | 0.7703 (2) | 0.5892 (2) | 0.1354 (2) | 0.0255 (6) | |
H17A | 0.8500 | 0.6250 | 0.1295 | 0.031* | |
H17B | 0.7708 | 0.5484 | 0.1980 | 0.031* | |
C18 | 0.7254 (3) | 0.7341 (3) | −0.2228 (2) | 0.0322 (7) | |
H18A | 0.8094 | 0.7419 | −0.1985 | 0.048* | |
H18B | 0.7061 | 0.7907 | −0.2689 | 0.048* | |
H18C | 0.7174 | 0.6680 | −0.2579 | 0.048* | |
C19 | 0.6355 (3) | 0.7368 (2) | −0.1328 (2) | 0.0253 (6) | |
H19A | 0.6390 | 0.8062 | −0.1019 | 0.030* | |
H19B | 0.5513 | 0.7264 | −0.1581 | 0.030* | |
C20 | 0.6615 (2) | 0.6555 (2) | −0.0518 (2) | 0.0225 (6) | |
C21 | 0.5793 (2) | 0.6501 (2) | 0.0434 (2) | 0.0216 (6) | |
H21 | 0.5127 | 0.7028 | 0.0389 | 0.026* | |
C22 | 0.7129 (2) | 0.7854 (2) | 0.1261 (2) | 0.0239 (6) | |
H22A | 0.7495 | 0.7926 | 0.0588 | 0.029* | |
H22B | 0.6443 | 0.8350 | 0.1313 | 0.029* | |
O2 | 0.90688 (17) | 0.99099 (15) | 0.13719 (14) | 0.0261 (5) | |
H3 | 0.9525 | 0.9795 | 0.0735 | 0.031* | |
C23 | 0.9903 (3) | 1.0280 (2) | 0.2140 (2) | 0.0293 (7) | |
H23A | 1.0413 | 1.0834 | 0.1866 | 0.044* | |
H23B | 1.0426 | 0.9710 | 0.2363 | 0.044* | |
H23C | 0.9432 | 1.0544 | 0.2708 | 0.044* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0262 (11) | 0.0247 (12) | 0.0205 (12) | −0.0059 (10) | 0.0004 (10) | −0.0017 (10) |
O1 | 0.0288 (10) | 0.0328 (11) | 0.0229 (10) | −0.0096 (9) | −0.0037 (9) | −0.0004 (9) |
C2 | 0.0248 (14) | 0.0220 (14) | 0.0196 (13) | 0.0026 (11) | −0.0017 (12) | −0.0003 (11) |
C3 | 0.0309 (15) | 0.0205 (14) | 0.0313 (15) | 0.0011 (12) | −0.0014 (13) | −0.0004 (12) |
N4 | 0.0211 (11) | 0.0233 (12) | 0.0241 (11) | −0.0023 (9) | 0.0016 (10) | 0.0006 (10) |
C5 | 0.0253 (14) | 0.0288 (15) | 0.0244 (14) | −0.0057 (12) | 0.0004 (12) | −0.0013 (12) |
C6 | 0.0279 (15) | 0.0313 (16) | 0.0241 (15) | −0.0064 (13) | 0.0004 (13) | 0.0008 (12) |
C7 | 0.0236 (13) | 0.0255 (14) | 0.0211 (14) | −0.0003 (11) | −0.0004 (12) | 0.0007 (11) |
C8 | 0.0203 (13) | 0.0253 (14) | 0.0223 (14) | 0.0016 (11) | −0.0012 (11) | 0.0035 (11) |
C9 | 0.0273 (15) | 0.0291 (15) | 0.0270 (15) | 0.0006 (12) | −0.0001 (13) | 0.0011 (13) |
C10 | 0.0272 (14) | 0.0316 (15) | 0.0221 (14) | 0.0031 (12) | 0.0027 (13) | 0.0024 (12) |
C11 | 0.0282 (14) | 0.0266 (14) | 0.0208 (14) | 0.0041 (12) | −0.0002 (12) | −0.0037 (11) |
C12 | 0.0279 (14) | 0.0222 (14) | 0.0239 (14) | −0.0011 (12) | −0.0023 (12) | −0.0012 (11) |
C13 | 0.0255 (14) | 0.0214 (13) | 0.0235 (14) | 0.0014 (11) | 0.0010 (12) | 0.0021 (11) |
C14 | 0.0244 (13) | 0.0242 (14) | 0.0285 (14) | 0.0040 (11) | 0.0005 (13) | 0.0004 (13) |
C15 | 0.0259 (14) | 0.0295 (15) | 0.0214 (13) | 0.0014 (12) | 0.0020 (13) | −0.0044 (12) |
C16 | 0.0237 (13) | 0.0227 (14) | 0.0192 (13) | −0.0021 (11) | −0.0013 (12) | −0.0006 (11) |
C17 | 0.0226 (13) | 0.0292 (15) | 0.0248 (14) | 0.0012 (12) | −0.0027 (12) | 0.0004 (12) |
C18 | 0.0325 (16) | 0.0393 (18) | 0.0248 (15) | −0.0045 (14) | 0.0006 (13) | 0.0036 (13) |
C19 | 0.0274 (14) | 0.0284 (15) | 0.0201 (14) | −0.0014 (12) | −0.0011 (12) | −0.0005 (12) |
C20 | 0.0246 (14) | 0.0235 (14) | 0.0192 (13) | −0.0034 (11) | −0.0014 (12) | −0.0028 (11) |
C21 | 0.0210 (12) | 0.0231 (14) | 0.0207 (13) | 0.0023 (11) | −0.0009 (12) | 0.0010 (11) |
C22 | 0.0244 (14) | 0.0260 (15) | 0.0214 (14) | −0.0035 (12) | −0.0028 (12) | −0.0003 (11) |
O2 | 0.0251 (10) | 0.0340 (11) | 0.0193 (9) | −0.0042 (8) | −0.0008 (8) | −0.0028 (8) |
C23 | 0.0338 (15) | 0.0296 (16) | 0.0244 (14) | −0.0040 (13) | −0.0059 (13) | −0.0032 (12) |
Geometric parameters (Å, º) top
N1—C13 | 1.376 (3) | C12—C13 | 1.397 (4) |
N1—C2 | 1.397 (3) | C12—H12 | 0.9300 |
N1—H1 | 0.9106 | C14—C15 | 1.508 (4) |
O1—C22 | 1.432 (3) | C14—C17 | 1.544 (4) |
O1—H2 | 0.9579 | C14—H14 | 0.9800 |
C2—C7 | 1.382 (4) | C15—C20 | 1.329 (4) |
C2—C16 | 1.520 (4) | C15—H15 | 0.9300 |
C3—N4 | 1.490 (3) | C16—C22 | 1.541 (4) |
C3—C14 | 1.540 (4) | C16—C21 | 1.565 (4) |
C3—H3A | 0.9700 | C16—C17 | 1.566 (4) |
C3—H3B | 0.9700 | C17—H17A | 0.9700 |
N4—C5 | 1.466 (3) | C17—H17B | 0.9700 |
N4—C21 | 1.485 (3) | C18—C19 | 1.524 (4) |
C5—C6 | 1.524 (4) | C18—H18A | 0.9600 |
C5—H5A | 0.9700 | C18—H18B | 0.9600 |
C5—H5B | 0.9700 | C18—H18C | 0.9600 |
C6—C7 | 1.493 (4) | C19—C20 | 1.506 (4) |
C6—H6A | 0.9700 | C19—H19A | 0.9700 |
C6—H6B | 0.9700 | C19—H19B | 0.9700 |
C7—C8 | 1.445 (4) | C20—C21 | 1.529 (4) |
C8—C9 | 1.400 (4) | C21—H21 | 0.9800 |
C8—C13 | 1.411 (4) | C22—H22A | 0.9700 |
C9—C10 | 1.388 (4) | C22—H22B | 0.9700 |
C9—H9 | 0.9300 | O2—C23 | 1.426 (3) |
C10—C11 | 1.405 (4) | O2—H3 | 0.9786 |
C10—H10 | 0.9300 | C23—H23A | 0.9600 |
C11—C12 | 1.384 (4) | C23—H23B | 0.9600 |
C11—H11 | 0.9300 | C23—H23C | 0.9600 |
| | | |
C13—N1—C2 | 110.0 (2) | C3—C14—H14 | 111.0 |
C13—N1—H1 | 132.2 | C17—C14—H14 | 111.0 |
C2—N1—H1 | 117.4 | C20—C15—C14 | 114.2 (2) |
C22—O1—H2 | 101.7 | C20—C15—H15 | 122.9 |
C7—C2—N1 | 108.6 (2) | C14—C15—H15 | 122.9 |
C7—C2—C16 | 133.5 (2) | C2—C16—C22 | 110.3 (2) |
N1—C2—C16 | 117.7 (2) | C2—C16—C21 | 113.3 (2) |
N4—C3—C14 | 108.6 (2) | C22—C16—C21 | 106.2 (2) |
N4—C3—H3A | 110.0 | C2—C16—C17 | 109.7 (2) |
C14—C3—H3A | 110.0 | C22—C16—C17 | 111.4 (2) |
N4—C3—H3B | 110.0 | C21—C16—C17 | 105.8 (2) |
C14—C3—H3B | 110.0 | C14—C17—C16 | 110.1 (2) |
H3A—C3—H3B | 108.3 | C14—C17—H17A | 109.6 |
C5—N4—C21 | 116.5 (2) | C16—C17—H17A | 109.6 |
C5—N4—C3 | 115.8 (2) | C14—C17—H17B | 109.6 |
C21—N4—C3 | 110.6 (2) | C16—C17—H17B | 109.6 |
N4—C5—C6 | 118.2 (2) | H17A—C17—H17B | 108.2 |
N4—C5—H5A | 107.8 | C19—C18—H18A | 109.5 |
C6—C5—H5A | 107.8 | C19—C18—H18B | 109.5 |
N4—C5—H5B | 107.8 | H18A—C18—H18B | 109.5 |
C6—C5—H5B | 107.8 | C19—C18—H18C | 109.5 |
H5A—C5—H5B | 107.1 | H18A—C18—H18C | 109.5 |
C7—C6—C5 | 116.4 (2) | H18B—C18—H18C | 109.5 |
C7—C6—H6A | 108.2 | C20—C19—C18 | 114.5 (2) |
C5—C6—H6A | 108.2 | C20—C19—H19A | 108.6 |
C7—C6—H6B | 108.2 | C18—C19—H19A | 108.6 |
C5—C6—H6B | 108.2 | C20—C19—H19B | 108.6 |
H6A—C6—H6B | 107.3 | C18—C19—H19B | 108.6 |
C2—C7—C8 | 106.7 (2) | H19A—C19—H19B | 107.6 |
C2—C7—C6 | 130.8 (2) | C15—C20—C19 | 127.9 (3) |
C8—C7—C6 | 122.3 (2) | C15—C20—C21 | 112.1 (2) |
C9—C8—C13 | 119.4 (2) | C19—C20—C21 | 120.0 (2) |
C9—C8—C7 | 132.9 (3) | N4—C21—C20 | 105.1 (2) |
C13—C8—C7 | 107.7 (2) | N4—C21—C16 | 113.5 (2) |
C10—C9—C8 | 118.6 (3) | C20—C21—C16 | 108.6 (2) |
C10—C9—H9 | 120.7 | N4—C21—H21 | 109.8 |
C8—C9—H9 | 120.7 | C20—C21—H21 | 109.8 |
C9—C10—C11 | 121.1 (3) | C16—C21—H21 | 109.8 |
C9—C10—H10 | 119.4 | O1—C22—C16 | 111.6 (2) |
C11—C10—H10 | 119.4 | O1—C22—H22A | 109.3 |
C12—C11—C10 | 121.3 (2) | C16—C22—H22A | 109.3 |
C12—C11—H11 | 119.4 | O1—C22—H22B | 109.3 |
C10—C11—H11 | 119.4 | C16—C22—H22B | 109.3 |
C11—C12—C13 | 117.4 (3) | C19—C22—H22B | 90.2 |
C11—C12—H12 | 121.3 | H22A—C22—H22B | 108.0 |
C13—C12—H12 | 121.3 | C23—O2—H3 | 109.8 |
N1—C13—C12 | 130.7 (3) | O2—C23—H23A | 109.5 |
N1—C13—C8 | 107.1 (2) | O2—C23—H23B | 109.5 |
C12—C13—C8 | 122.2 (3) | H23A—C23—H23B | 109.5 |
C15—C14—C3 | 108.7 (2) | O2—C23—H23C | 109.5 |
C15—C14—C17 | 107.6 (2) | H23A—C23—H23C | 109.5 |
C3—C14—C17 | 107.5 (2) | H23B—C23—H23C | 109.5 |
C15—C14—H14 | 111.0 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.91 | 1.91 | 2.660 (3) | 138 |
O1—H2···O2 | 0.96 | 1.72 | 2.679 (3) | 176 |
O2—H3···N4i | 0.98 | 1.73 | 2.703 (3) | 177 |
Symmetry code: (i) x+1/2, −y+3/2, −z. |
(II) dihydrocatharanthinol monohydrate
top
Crystal data top
C20H26N2O·H2O | F(000) = 712 |
Mr = 328.44 | Dx = 1.328 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 12617 reflections |
a = 10.6728 (4) Å | θ = 3.0–25.7° |
b = 12.0168 (6) Å | µ = 0.09 mm−1 |
c = 12.8132 (7) Å | T = 100 K |
V = 1643.33 (14) Å3 | Parallelepiped, colourless |
Z = 4 | 0.25 × 0.25 × 0.20 mm |
Data collection top
Nonius KappaCCD area-detector diffractometer | 1621 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.066 |
Graphite monochromator | θmax = 25.7°, θmin = 3.0° |
ϕ scans | h = 0→12 |
12617 measured reflections | k = 0→14 |
1788 independent reflections | l = 0→15 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0441P)2 + 0.4399P] where P = (Fo2 + 2Fc2)/3 |
1788 reflections | (Δ/σ)max < 0.001 |
218 parameters | Δρmax = 0.16 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
Crystal data top
C20H26N2O·H2O | V = 1643.33 (14) Å3 |
Mr = 328.44 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 10.6728 (4) Å | µ = 0.09 mm−1 |
b = 12.0168 (6) Å | T = 100 K |
c = 12.8132 (7) Å | 0.25 × 0.25 × 0.20 mm |
Data collection top
Nonius KappaCCD area-detector diffractometer | 1621 reflections with I > 2σ(I) |
12617 measured reflections | Rint = 0.066 |
1788 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.16 e Å−3 |
1788 reflections | Δρmin = −0.20 e Å−3 |
218 parameters | |
Special details top
Experimental. The unit-cell parameters have been determined from 10 frames, then refined on all data. The crystal-to-detector distance was fixed to 28 mm. One-half of the diffraction sphere was scanned (90 frames, ϕ scans, 2° by frame). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Structure solved by direct methods and subsequent Fourier-difference synthesis. All non-hydrogen atoms were refined with anisotropic displacement parameters. The H atoms bound to O and N were found on the Fourier-difference map and introduced as riding atoms with an isotropic displacement parameter equal to 1.2 times that of the parent atom. All other atoms were introduced at calculated positions as riding atoms with an isotropic displacement parameter equal to 1.2 (CH, CH2) or 1.5 (CH3) times that of the parent atom. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.96599 (18) | 0.84084 (16) | 1.04012 (14) | 0.0192 (4) | |
H1 | 0.9063 | 0.7850 | 1.0403 | 0.023* | |
O1 | 1.06105 (15) | 0.79923 (14) | 0.80113 (13) | 0.0220 (4) | |
H2 | 1.0825 | 0.7359 | 0.7552 | 0.026* | |
C2 | 0.9680 (2) | 0.92951 (19) | 0.97081 (17) | 0.0180 (5) | |
C3 | 0.7357 (2) | 1.1242 (2) | 0.8246 (2) | 0.0218 (5) | |
H3A | 0.7095 | 1.1708 | 0.7668 | 0.026* | |
H3B | 0.6977 | 1.1530 | 0.8878 | 0.026* | |
N4 | 0.87548 (18) | 1.12787 (16) | 0.83443 (15) | 0.0186 (4) | |
C5 | 0.9132 (2) | 1.16724 (19) | 0.93929 (19) | 0.0210 (5) | |
H5A | 0.8538 | 1.1391 | 0.9902 | 0.025* | |
H5B | 0.9085 | 1.2478 | 0.9406 | 0.025* | |
C6 | 1.0448 (2) | 1.13179 (19) | 0.97164 (19) | 0.0224 (5) | |
H6A | 1.1010 | 1.1364 | 0.9123 | 0.027* | |
H6B | 1.0760 | 1.1810 | 1.0258 | 0.027* | |
C7 | 1.0404 (2) | 1.0141 (2) | 1.01160 (17) | 0.0197 (5) | |
C8 | 1.0850 (2) | 0.9763 (2) | 1.11184 (18) | 0.0198 (5) | |
C9 | 1.1589 (2) | 1.0240 (2) | 1.1911 (2) | 0.0237 (5) | |
H9 | 1.1916 | 1.0953 | 1.1833 | 0.028* | |
C10 | 1.1820 (2) | 0.9631 (2) | 1.2807 (2) | 0.0257 (6) | |
H10 | 1.2311 | 0.9938 | 1.3333 | 0.031* | |
C11 | 1.1324 (2) | 0.8554 (2) | 1.2936 (2) | 0.0245 (5) | |
H11 | 1.1497 | 0.8163 | 1.3546 | 0.029* | |
C12 | 1.0589 (2) | 0.8063 (2) | 1.21782 (18) | 0.0224 (5) | |
H12 | 1.0257 | 0.7354 | 1.2269 | 0.027* | |
C13 | 1.0364 (2) | 0.86766 (19) | 1.12683 (17) | 0.0192 (5) | |
C14 | 0.6915 (2) | 1.00436 (19) | 0.80605 (19) | 0.0210 (5) | |
H14 | 0.5999 | 1.0003 | 0.8108 | 0.025* | |
C15 | 0.7347 (2) | 0.9703 (2) | 0.69627 (19) | 0.0215 (5) | |
H15A | 0.6826 | 1.0056 | 0.6438 | 0.026* | |
H15B | 0.7287 | 0.8903 | 0.6878 | 0.026* | |
C16 | 0.8969 (2) | 0.9215 (2) | 0.86882 (18) | 0.0181 (5) | |
C17 | 0.7516 (2) | 0.9269 (2) | 0.88732 (19) | 0.0197 (5) | |
H17A | 0.7159 | 0.8529 | 0.8814 | 0.024* | |
H17B | 0.7345 | 0.9545 | 0.9570 | 0.024* | |
C18 | 1.0500 (2) | 1.0113 (2) | 0.5533 (2) | 0.0278 (6) | |
H18A | 1.1031 | 1.0435 | 0.6057 | 0.042* | |
H18B | 1.0115 | 1.0695 | 0.5133 | 0.042* | |
H18C | 1.0991 | 0.9650 | 0.5081 | 0.042* | |
C19 | 0.9489 (2) | 0.9414 (2) | 0.60560 (19) | 0.0221 (5) | |
H19A | 0.9880 | 0.8791 | 0.6411 | 0.027* | |
H19B | 0.8935 | 0.9117 | 0.5525 | 0.027* | |
C20 | 0.8715 (2) | 1.00833 (19) | 0.68450 (17) | 0.0185 (5) | |
H20 | 0.8672 | 1.0840 | 0.6561 | 0.022* | |
C21 | 0.9293 (2) | 1.02089 (18) | 0.79529 (18) | 0.0178 (5) | |
H21 | 1.0205 | 1.0280 | 0.7894 | 0.021* | |
C22 | 0.9291 (2) | 0.80721 (19) | 0.82055 (18) | 0.0189 (5) | |
H22A | 0.9036 | 0.7484 | 0.8679 | 0.023* | |
H22B | 0.8836 | 0.7979 | 0.7556 | 0.023* | |
O2 | 1.25670 (15) | 0.80843 (14) | 0.94605 (14) | 0.0281 (4) | |
H3 | 1.1850 | 0.8056 | 0.8994 | 0.034* | |
H4 | 1.2333 | 0.8541 | 1.0028 | 0.034* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0209 (9) | 0.0194 (10) | 0.0174 (10) | −0.0005 (8) | −0.0007 (8) | 0.0002 (8) |
O1 | 0.0196 (8) | 0.0211 (8) | 0.0253 (9) | 0.0026 (7) | −0.0004 (7) | −0.0045 (7) |
C2 | 0.0200 (11) | 0.0176 (11) | 0.0164 (12) | 0.0026 (10) | −0.0003 (9) | 0.0009 (9) |
C3 | 0.0202 (12) | 0.0213 (12) | 0.0238 (13) | 0.0033 (10) | 0.0027 (9) | 0.0014 (10) |
N4 | 0.0192 (9) | 0.0175 (9) | 0.0190 (10) | 0.0019 (8) | −0.0002 (8) | −0.0015 (8) |
C5 | 0.0265 (12) | 0.0159 (11) | 0.0204 (12) | −0.0006 (9) | 0.0007 (9) | 0.0002 (10) |
C6 | 0.0244 (12) | 0.0204 (12) | 0.0225 (12) | −0.0026 (10) | 0.0002 (10) | −0.0016 (10) |
C7 | 0.0191 (11) | 0.0215 (12) | 0.0185 (11) | 0.0006 (10) | 0.0006 (9) | −0.0009 (9) |
C8 | 0.0174 (11) | 0.0216 (12) | 0.0202 (12) | 0.0016 (9) | 0.0006 (9) | −0.0015 (10) |
C9 | 0.0212 (11) | 0.0229 (12) | 0.0270 (13) | 0.0001 (10) | 0.0008 (10) | −0.0046 (11) |
C10 | 0.0246 (12) | 0.0315 (13) | 0.0210 (13) | 0.0017 (11) | −0.0031 (10) | −0.0067 (11) |
C11 | 0.0266 (12) | 0.0267 (13) | 0.0202 (12) | 0.0088 (11) | −0.0005 (10) | 0.0009 (11) |
C12 | 0.0218 (11) | 0.0208 (11) | 0.0244 (12) | 0.0055 (10) | 0.0018 (10) | 0.0019 (10) |
C13 | 0.0185 (11) | 0.0219 (12) | 0.0171 (11) | 0.0033 (10) | 0.0009 (9) | −0.0033 (9) |
C14 | 0.0174 (11) | 0.0220 (12) | 0.0236 (12) | 0.0001 (10) | 0.0008 (9) | 0.0000 (10) |
C15 | 0.0213 (12) | 0.0217 (12) | 0.0214 (12) | 0.0023 (10) | −0.0024 (9) | −0.0004 (10) |
C16 | 0.0168 (11) | 0.0187 (11) | 0.0189 (12) | 0.0004 (9) | 0.0010 (9) | −0.0003 (10) |
C17 | 0.0195 (11) | 0.0190 (11) | 0.0207 (12) | −0.0007 (10) | 0.0004 (9) | −0.0014 (10) |
C18 | 0.0283 (13) | 0.0281 (13) | 0.0269 (13) | −0.0021 (11) | 0.0063 (11) | −0.0024 (11) |
C19 | 0.0244 (12) | 0.0235 (13) | 0.0184 (12) | 0.0016 (10) | −0.0002 (9) | −0.0007 (10) |
C20 | 0.0200 (11) | 0.0171 (11) | 0.0182 (11) | 0.0005 (9) | −0.0015 (9) | 0.0006 (10) |
C21 | 0.0185 (11) | 0.0166 (11) | 0.0184 (11) | 0.0007 (9) | −0.0007 (9) | −0.0012 (10) |
C22 | 0.0191 (11) | 0.0186 (11) | 0.0190 (11) | 0.0012 (9) | −0.0013 (9) | 0.0008 (9) |
O2 | 0.0245 (9) | 0.0312 (9) | 0.0285 (9) | 0.0035 (8) | −0.0030 (7) | −0.0037 (8) |
Geometric parameters (Å, º) top
N1—C13 | 1.379 (3) | C12—C13 | 1.400 (3) |
N1—C2 | 1.387 (3) | C12—H12 | 0.9300 |
N1—H1 | 0.9249 | C14—C15 | 1.536 (3) |
O1—C22 | 1.434 (3) | C14—C17 | 1.537 (3) |
O1—H2 | 0.9882 | C14—H14 | 0.9800 |
C2—C7 | 1.379 (3) | C15—C20 | 1.537 (3) |
C2—C16 | 1.514 (3) | C15—H15A | 0.9700 |
C3—N4 | 1.498 (3) | C15—H15B | 0.9700 |
C3—C14 | 1.534 (3) | C16—C22 | 1.545 (3) |
C3—H3A | 0.9700 | C16—C21 | 1.560 (3) |
C3—H3B | 0.9700 | C16—C17 | 1.571 (3) |
N4—C5 | 1.480 (3) | C17—H17A | 0.9700 |
N4—C21 | 1.495 (3) | C17—H17B | 0.9700 |
C5—C6 | 1.526 (3) | C18—C19 | 1.522 (3) |
C5—H5A | 0.9700 | C18—H18A | 0.9600 |
C5—H5B | 0.9700 | C18—H18B | 0.9600 |
C6—C7 | 1.505 (3) | C18—H18C | 0.9600 |
C6—H6A | 0.9700 | C19—C20 | 1.533 (3) |
C6—H6B | 0.9700 | C19—H19A | 0.9700 |
C7—C8 | 1.443 (3) | C19—H19B | 0.9700 |
C8—C9 | 1.407 (3) | C20—C21 | 1.555 (3) |
C8—C13 | 1.418 (3) | C20—H20 | 0.9800 |
C9—C10 | 1.384 (4) | C21—H21 | 0.9800 |
C9—H9 | 0.9300 | C22—H22A | 0.9700 |
C10—C11 | 1.408 (4) | C22—H22B | 0.9700 |
C10—H10 | 0.9300 | O2—H3 | 0.9713 |
C11—C12 | 1.380 (3) | O2—H4 | 0.9452 |
C11—H11 | 0.9300 | | |
| | | |
C13—N1—C2 | 109.12 (19) | C3—C14—H14 | 110.1 |
C13—N1—H1 | 122.9 | C15—C14—H14 | 110.1 |
C2—N1—H1 | 124.7 | C17—C14—H14 | 110.1 |
C22—O1—H2 | 112.5 | C14—C15—C20 | 107.22 (19) |
C7—C2—N1 | 109.4 (2) | C14—C15—H15A | 110.3 |
C7—C2—C16 | 130.9 (2) | C20—C15—H15A | 110.3 |
N1—C2—C16 | 119.7 (2) | C14—C15—H15B | 110.3 |
N4—C3—C14 | 110.33 (18) | C20—C15—H15B | 110.3 |
N4—C3—H3A | 109.6 | H15A—C15—H15B | 108.5 |
C14—C3—H3A | 109.6 | C2—C16—C22 | 106.90 (18) |
N4—C3—H3B | 109.6 | C2—C16—C21 | 111.20 (19) |
C14—C3—H3B | 109.6 | C22—C16—C21 | 112.93 (18) |
H3A—C3—H3B | 108.1 | C2—C16—C17 | 111.23 (19) |
C5—N4—C21 | 118.35 (18) | C22—C16—C17 | 108.43 (18) |
C5—N4—C3 | 110.91 (19) | C21—C16—C17 | 106.18 (18) |
C21—N4—C3 | 109.22 (18) | C14—C17—C16 | 109.56 (19) |
N4—C5—C6 | 114.1 (2) | C14—C17—H17A | 109.8 |
N4—C5—H5A | 108.7 | C16—C17—H17A | 109.8 |
C6—C5—H5A | 108.7 | C14—C17—H17B | 109.8 |
N4—C5—H5B | 108.7 | C16—C17—H17B | 109.8 |
C6—C5—H5B | 108.7 | H17A—C17—H17B | 108.2 |
H5A—C5—H5B | 107.6 | C19—C18—H18A | 109.5 |
C7—C6—C5 | 109.01 (19) | C19—C18—H18B | 109.5 |
C7—C6—H6A | 109.9 | H18A—C18—H18B | 109.5 |
C5—C6—H6A | 109.9 | C19—C18—H18C | 109.5 |
C7—C6—H6B | 109.9 | H18A—C18—H18C | 109.5 |
C5—C6—H6B | 109.9 | H18B—C18—H18C | 109.5 |
H6A—C6—H6B | 108.3 | C18—C19—C20 | 112.5 (2) |
C2—C7—C8 | 106.9 (2) | C18—C19—H19A | 109.1 |
C2—C7—C6 | 125.5 (2) | C20—C19—H19A | 109.1 |
C8—C7—C6 | 126.0 (2) | C18—C19—H19B | 109.1 |
C9—C8—C13 | 118.8 (2) | C20—C19—H19B | 109.1 |
C9—C8—C7 | 134.4 (2) | H19A—C19—H19B | 107.8 |
C13—C8—C7 | 106.8 (2) | C19—C20—C15 | 114.9 (2) |
C10—C9—C8 | 118.9 (2) | C19—C20—C21 | 116.03 (19) |
C10—C9—H9 | 120.5 | C15—C20—C21 | 108.44 (18) |
C8—C9—H9 | 120.5 | C19—C20—H20 | 105.5 |
C9—C10—C11 | 121.0 (2) | C15—C20—H20 | 105.5 |
C9—C10—H10 | 119.5 | C21—C20—H20 | 105.5 |
C11—C10—H10 | 119.5 | N4—C21—C20 | 103.71 (17) |
C12—C11—C10 | 121.6 (2) | N4—C21—C16 | 111.75 (18) |
C12—C11—H11 | 119.2 | C20—C21—C16 | 112.90 (18) |
C10—C11—H11 | 119.2 | N4—C21—H21 | 109.4 |
C11—C12—C13 | 117.3 (2) | C20—C21—H21 | 109.4 |
C11—C12—H12 | 121.4 | C16—C21—H21 | 109.4 |
C13—C12—H12 | 121.4 | O1—C22—C16 | 110.31 (18) |
N1—C13—C12 | 129.9 (2) | O1—C22—H22A | 109.6 |
N1—C13—C8 | 107.78 (19) | C16—C22—H22A | 109.6 |
C12—C13—C8 | 122.3 (2) | O1—C22—H22B | 109.6 |
C3—C14—C15 | 107.40 (19) | C16—C22—H22B | 109.6 |
C3—C14—C17 | 109.60 (19) | H22A—C22—H22B | 108.1 |
C15—C14—C17 | 109.51 (18) | H3—O2—H4 | 106.6 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.92 | 1.96 | 2.870 (3) | 168 |
O1—H2···N4ii | 0.99 | 1.79 | 2.778 (3) | 176 |
O2—H3···O1 | 0.97 | 1.83 | 2.797 (2) | 174 |
Symmetry codes: (i) x−1/2, −y+3/2, −z+2; (ii) −x+2, y−1/2, −z+3/2. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C20H24N2O·CH4O | C20H26N2O·H2O |
Mr | 340.45 | 328.44 |
Crystal system, space group | Orthorhombic, P212121 | Orthorhombic, P212121 |
Temperature (K) | 100 | 100 |
a, b, c (Å) | 10.7136 (5), 12.6846 (8), 13.1078 (9) | 10.6728 (4), 12.0168 (6), 12.8132 (7) |
V (Å3) | 1781.32 (19) | 1643.33 (14) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.08 | 0.09 |
Crystal size (mm) | 0.24 × 0.20 × 0.08 | 0.25 × 0.25 × 0.20 |
|
Data collection |
Diffractometer | Nonius KappaCCD area-detector diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13656, 1927, 1707 | 12617, 1788, 1621 |
Rint | 0.063 | 0.066 |
(sin θ/λ)max (Å−1) | 0.610 | 0.610 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.090, 1.05 | 0.035, 0.088, 1.07 |
No. of reflections | 1927 | 1788 |
No. of parameters | 229 | 218 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.19, −0.19 | 0.16, −0.20 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.91 | 1.91 | 2.660 (3) | 138 |
O1—H2···O2 | 0.96 | 1.72 | 2.679 (3) | 176 |
O2—H3···N4i | 0.98 | 1.73 | 2.703 (3) | 177 |
Symmetry code: (i) x+1/2, −y+3/2, −z. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.92 | 1.96 | 2.870 (3) | 168 |
O1—H2···N4ii | 0.99 | 1.79 | 2.778 (3) | 176 |
O2—H3···O1 | 0.97 | 1.83 | 2.797 (2) | 174 |
Symmetry codes: (i) x−1/2, −y+3/2, −z+2; (ii) −x+2, y−1/2, −z+3/2. |
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Compounds (I) and (II) pertain to the Iboga class of alkaloids, characterized by their indoloazepine-isoquinuclidine skeleton. Several members of this family have been characterized crystallographically, such as ibogaine, extracted from West African Tabernanthe iboga (Arai et al., 1960; Soriano-García, 1992), coronaridine (Kutney et al., 1973), bonafousine (Damak et al., 1976), epiheyneanine (Vencato et al., 1987), ibogamine (Soriano-García et al., 1988) and hydroxyibogamine (Massiot et al., 1983). Alkaloids of the closely related voacanga class have also been described (Soriano-García et al., 1989, 1991). \sch
Compounds (I) and (II) have been synthesized from catharanthine, which is a naturally occurring alkaloid isolated from the leaves of the Madagascar periwinkle Catharanthus roseus, and whose crystal structure has not yet been elucidated. Compound (I) differs from catharanthine by replacement of the methylester substituent of the latter with a hydroxymethyl group. Hydrogenation of catharanthine, under heterogeneous conditions, is known to afford dihydrocatharanthine as a single diastereomer. The selectivity of this process can be rationalized by assuming that addition of hydrogen takes place from the less hindered side of the Iboga skeleton. During our studies of the selective reduction of the C15═C20 bond, we envisioned that the stereochemical course of hydrogenation could be influenced by the presence of a neighbouring hydroxymethyl group. Indeed, association of the hydroxymethyl heteroatom with the catalyst surface can lead to delivery of hydrogen from the hindered `bottom' side. For the purpose of this study, we synthesized the starting substrate, (I), and also compound (II), which results from classical hydrogenation.
Both (I) and (II) crystallize as solvates. The asymmetric unit contains one alkaloid molecule and one methanol or one water molecule in (I) and (II), respectively (Figs. 1 and 2). The two compounds possess a hydroxymethyl substituent on atom C16, common to the seven-membered ring and the isoquinuclidine system, and an ethyl substituent on the latter. The isoquinuclidine ring includes a C15═C20 bond in (I) [bond length 1.329 (4) Å] whereas this bond is hydrogenated in (II) [bond length 1.537 (3) Å], with the ethyl substituent trans with respect to the isoquinuclidine atom N4. This same substituent is in a cis position in ibogaine. To the best of our knowledge, this is the first crystallographic characterization in this family of compounds of a molecule including a double bond in the quinuclidine system. A search of the Cambridge Structural Database (CSD, Version 5.25; Allen, 2002) gives 13 instances of substituted quinuclidine rings including such a bond, with a mean bond length of 1.329 (4) Å, which perfectly matches that in (I). The other bond lengths in both compounds are in agreement with those reported for other high-quality structure determinations of indole (Nigović et al., 2000) and alkaloid (Soriano-García et al., 1988, 1989) systems.
The indole ring system is planar, with r.m.s. deviations of 0.007 and 0.009 Å in (I) and (II), respectively. The seven-membered ring is in a chair conformation in (I) and in a distorted boat conformation in (II). Both conformations have previously been encountered in compounds of the same family, with no obvious rationale. This conformation change is mainly due to the different position of atoms N4 and C5 in (I) and (II); the distances to the indole plane of atoms N4, C5, C6, C16 and C21 of the seven-membered ring are −0.031 (4), 0.429 (5), −0.127 (4), −0.086 (4) and 0.577 (4) Å, respectively, in (I), and 0.997 (3), 1.428 (3), 0.293 (3), 0.037 (3) and −0.185 (3) Å, respectively, in (II). The mean plane defined by the seven-membered ring has r.m.s. deviations of 0.216 and 0.373 Å in (I) and (II), respectively, and has dihedral angles with the indole plane of 7.07 (12) in (I) or 23.69 (8)° in (II). The dihedral angle between the C21—N4—C3—C14 plane defined by the isoquinuclidine moiety [r.m.s. deviation 0.053 in (I) and 0.067 Å in (II)] and the indole system is 78.57 (10) in (I) and 73.53 (7)° in (II); values in the range 69.1 (1)–114.0 (2)° have been reported for other members of this family of compounds (Soriano-García, 1992). The dihedral angle between the same plane and the mean seven-membered ring plane is 85.62 (11) for (I) and 60.85 (8)° for (II). The two triangular isoquinuclidine planes, N4—C16—C20 and C3—C15—C17, define a dihedral angle of 5.6 (2) in (I) and 1.88 (3)° in (II) and are thus tilted slightly with respect to their parallel position in the ideal conformation.
Apart from van der Waals interactions, the alkaloid molecules are held in the crystal packing by hydrogen bonds involving the solvent molecules in both (I) and (II). In (I), an intramolecular hydrogen bond links the N1—H group and the hydroxy atom O1 in the same molecule. The O1—H group itself acts as a donor towards the methanol atom O2, the latter being finally hydrogen bonded to the isoquinuclidine atom N4 of a neighbouring molecule related to the first by the binary screw axis parallel to the a axis (Table 1). This hydrogen-bonding network gives rise to zigzag chains directed along the a axis.
No intramolecular hydrogen bond is present in (II). Atom O1 acts as a donor towards atom N4 of a neighbouring molecule related by the binary screw axis parallel to the b axis, and as an acceptor from the water molecule. Finally, atom N1 is bound to another water molecule related to the first by the screw axis parallel to the a axis (Table 2). The resulting arrangement is three-dimensional.
Some significant C—H···π interactions are present in both compounds. In (I), an interaction involves the H atom of the isoquinuclidine bridgehead atom, C14, and the six-membered aromatic ring of a second molecule related to the first by the screw axis parallel to the c axis [H14···centroid distance 2.74 Å and C14—H14···centroid angle 164°] and thus links adjacent hydrogen-bonded chains. In (II), such an interaction is found between the water H atom which is not involved in hydrogen bonding and the indole five-membered ring in the same unit [H4···centroid distance 2.52 Å and O2—H4···centroid angle 129°], and two others between H atoms bound to atoms C14 and C15 and the indole six- and five-membered rings, respectively, of the molecule related by the screw axis parallel to the c axis [H14···centroid distance 2.81 Å and C14—H14···centroid angle 138°, and H15A···centroid distance 2.59 Å and C15—H15A···centroid angle 159°].