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The absolute configuration of the neoclerodane glycoside amarisolide, presented here as the monohydrate, C26H36O9·H2O, has been determined by association with the known configuration of the glucose moiety. Its structure was established as 2β-(O-β-D-glucopyranosyl)neocleroda-3,13(16),14-trien-15,16-epoxy-18,19-olide. Extensive hydrogen bonding among the hydroxyl groups of the sugar moiety forms layers which are interconnected by water molecules.
Supporting information
CCDC reference: 169948
The dried and finely powdered aerial parts of S. amarissima were extracted with
acetone at room temperature. The extract was subjected to a partition between
methanol and hexane. The methanolic extract was fractionated over a celite
column using mixtures of hexane: ethyl acetate: acetone of increasing
polarity. The fractions eluted with ethyl acetate: acetone 9:1 (A) and 4:1 (B)
contained the title compound. Fractions A and B were combined, discoloured
with activated charcoal and crystallized from methanol-water to obtain the
title compound, m.p. 393–405 K. The anhydrous form melts at 479–481 K.
Hydrogen atoms of hydroxyl groups in the sugar moiety as well as those of the
water molecule were refined in a restrained fashion. The isotropic temperature
factor for all the H atoms in the structure was given as: Uiso =
1.2Ueq of parent atom. Diffraction data wre collected for one quarter
of the sphere plus several hundred Friedel opposites. Since the refinement of
the Flack parameter -0.4 (12) (Flack, 1983) was not useful in assigning the
absolute configuration, it was instead assigned by internal reference based on
the stereochemistry of the sugar moiety. Amarisolide was resistant to
hydrolysis under acidic or basic conditions. Nevertheless, the aglycone was
obtained by fungal action of Fusarium moniliforme, which is known to use the
sugar moieties of glucosides as a carbon source (García et al.,
1979). The absolute configuration was therefore assigned to agree with the
known chirality of the glucosyl moiety at C2.
Data collection: XSCANS (Siemens, 1993); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXLTL/PC (Sheldrick, 1990); software used to prepare material for publication: SHELXL97.
2
β-O-
β-
D-glucopyranosyl neo-cleroda-2,13 (16),14-trien-15,16-epoxy-
18,19-olide
top
Crystal data top
C26H36O9·H2O | F(000) = 1096 |
Mr = 510.56 | Dx = 1.332 Mg m−3 |
Monoclinic, C2 | Mo Kα radiation, λ = 0.71073 Å |
a = 16.997 (2) Å | Cell parameters from 41 reflections |
b = 8.441 (1) Å | θ = 5.0–12.5° |
c = 17.763 (1) Å | µ = 0.10 mm−1 |
β = 92.57 (1)° | T = 293 K |
V = 2545.9 (4) Å3 | Prism, colorless |
Z = 4 | 0.60 × 0.50 × 0.20 mm |
Data collection top
Siemens P4/PC diffractometer | Rint = 0.037 |
Radiation source: fine-focus sealed tube | θmax = 30.0°, θmin = 1.5° |
Graphite monochromator | h = 0→23 |
ω:2θ scans | k = 0→11 |
8034 measured reflections | l = −24→24 |
7373 independent reflections | 3 standard reflections every 97 reflections |
4762 reflections with I > 2σ(I) | intensity decay: 3% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.062 | Only H-atom coordinates refined |
wR(F2) = 0.143 | w = 1/[σ2(Fo2) + (0.0463P)2 + 0.124P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.017 |
7373 reflections | Δρmax = 0.23 e Å−3 |
439 parameters | Δρmin = −0.20 e Å−3 |
6 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0076 (7) |
Crystal data top
C26H36O9·H2O | V = 2545.9 (4) Å3 |
Mr = 510.56 | Z = 4 |
Monoclinic, C2 | Mo Kα radiation |
a = 16.997 (2) Å | µ = 0.10 mm−1 |
b = 8.441 (1) Å | T = 293 K |
c = 17.763 (1) Å | 0.60 × 0.50 × 0.20 mm |
β = 92.57 (1)° | |
Data collection top
Siemens P4/PC diffractometer | Rint = 0.037 |
8034 measured reflections | 3 standard reflections every 97 reflections |
7373 independent reflections | intensity decay: 3% |
4762 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.062 | 6 restraints |
wR(F2) = 0.143 | Only H-atom coordinates refined |
S = 1.03 | Δρmax = 0.23 e Å−3 |
7373 reflections | Δρmin = −0.20 e Å−3 |
439 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | −0.11391 (19) | 0.8218 (4) | 0.72558 (19) | 0.0348 (7) | |
H1A | −0.093 (2) | 0.721 (5) | 0.726 (2) | 0.042* | |
H1B | −0.165 (2) | 0.821 (5) | 0.701 (2) | 0.042* | |
O1 | 0.01980 (11) | 0.9002 (5) | 0.71008 (11) | 0.0319 (4) | |
C2 | −0.05927 (18) | 0.9216 (5) | 0.67860 (17) | 0.0325 (6) | |
H2 | −0.065 (2) | 0.883 (5) | 0.629 (2) | 0.039* | |
C3 | −0.08540 (18) | 1.0927 (5) | 0.67841 (18) | 0.0331 (6) | |
H3 | −0.079 (2) | 1.153 (5) | 0.637 (2) | 0.040* | |
C4 | −0.12961 (17) | 1.1475 (5) | 0.73207 (18) | 0.0319 (6) | |
C5 | −0.15668 (16) | 1.0596 (5) | 0.80000 (16) | 0.0289 (6) | |
C6 | −0.1352 (2) | 1.1448 (5) | 0.87479 (19) | 0.0358 (6) | |
H6A | −0.159 (2) | 1.243 (5) | 0.872 (2) | 0.043* | |
H6B | −0.080 (2) | 1.152 (5) | 0.881 (2) | 0.043* | |
C7 | −0.1626 (2) | 1.0471 (6) | 0.9408 (2) | 0.0415 (7) | |
H7A | −0.148 (2) | 1.087 (5) | 0.987 (2) | 0.050* | |
H7B | −0.219 (3) | 1.044 (5) | 0.943 (2) | 0.050* | |
C8 | −0.13108 (19) | 0.8771 (6) | 0.94405 (18) | 0.0368 (7) | |
H8 | −0.073 (2) | 0.882 (5) | 0.952 (2) | 0.044* | |
C9 | −0.14606 (17) | 0.7859 (5) | 0.86838 (18) | 0.0329 (6) | |
C10 | −0.11778 (16) | 0.8949 (5) | 0.80456 (16) | 0.0279 (5) | |
H10 | −0.064 (2) | 0.917 (4) | 0.8216 (19) | 0.034* | |
C11 | −0.09875 (19) | 0.6282 (5) | 0.8697 (2) | 0.0391 (7) | |
H11A | −0.112 (2) | 0.570 (5) | 0.820 (2) | 0.047* | |
H11B | −0.116 (2) | 0.567 (5) | 0.910 (2) | 0.047* | |
C12 | −0.0086 (2) | 0.6386 (6) | 0.8778 (3) | 0.0450 (8) | |
H12A | 0.009 (3) | 0.710 (6) | 0.849 (3) | 0.054* | |
H12B | 0.014 (2) | 0.675 (5) | 0.932 (3) | 0.054* | |
C13 | 0.02846 (19) | 0.4789 (6) | 0.8653 (2) | 0.0386 (7) | |
C14 | 0.0578 (2) | 0.3792 (6) | 0.9171 (2) | 0.0446 (8) | |
H14 | 0.065 (2) | 0.378 (5) | 0.970 (3) | 0.053* | |
O2 | 0.08138 (15) | 0.2392 (5) | 0.88526 (17) | 0.0537 (7) | |
C15 | 0.0662 (2) | 0.2569 (7) | 0.8106 (3) | 0.0589 (11) | |
H15 | 0.079 (3) | 0.177 (6) | 0.778 (3) | 0.071* | |
C16 | 0.0343 (2) | 0.3982 (7) | 0.7958 (2) | 0.0541 (10) | |
H16 | 0.013 (3) | 0.442 (6) | 0.752 (3) | 0.065* | |
C17 | −0.1642 (3) | 0.7952 (8) | 1.0130 (3) | 0.0592 (11) | |
H17A | −0.151 (3) | 0.852 (6) | 1.058 (3) | 0.071* | |
H17B | −0.143 (3) | 0.690 (6) | 1.019 (3) | 0.071* | |
H17C | −0.221 (3) | 0.799 (6) | 1.004 (3) | 0.071* | |
C18 | −0.18463 (19) | 1.2830 (6) | 0.7201 (2) | 0.0403 (7) | |
O3 | −0.25275 (14) | 1.2418 (5) | 0.75057 (16) | 0.0505 (7) | |
O4 | −0.17743 (16) | 1.4068 (5) | 0.68721 (17) | 0.0535 (7) | |
C19 | −0.24644 (19) | 1.0798 (6) | 0.7824 (2) | 0.0415 (8) | |
H19A | −0.281 (2) | 1.081 (5) | 0.827 (2) | 0.050* | |
H19B | −0.267 (2) | 1.004 (5) | 0.746 (2) | 0.050* | |
C20 | −0.2330 (2) | 0.7394 (6) | 0.8554 (3) | 0.0470 (8) | |
H20A | −0.245 (3) | 0.653 (6) | 0.891 (3) | 0.056* | |
H20B | −0.268 (3) | 0.835 (5) | 0.859 (2) | 0.056* | |
H20C | −0.242 (3) | 0.693 (5) | 0.806 (3) | 0.056* | |
C1' | 0.08205 (17) | 0.9169 (5) | 0.66194 (16) | 0.0284 (6) | |
H1' | 0.131 (2) | 0.907 (4) | 0.692 (2) | 0.034* | |
O1' | 0.07877 (13) | 1.0727 (4) | 0.63111 (12) | 0.0317 (5) | |
C2' | 0.08243 (17) | 0.7950 (5) | 0.59811 (17) | 0.0280 (6) | |
H2' | 0.038 (2) | 0.808 (4) | 0.565 (2) | 0.034* | |
O2' | 0.08767 (15) | 0.6400 (5) | 0.62838 (15) | 0.0404 (5) | |
H2'A | 0.043 (2) | 0.608 (5) | 0.626 (2) | 0.049* | |
C3' | 0.15345 (17) | 0.8274 (5) | 0.55074 (17) | 0.0284 (6) | |
H3' | 0.205 (2) | 0.808 (4) | 0.578 (2) | 0.034* | |
O3' | 0.15344 (15) | 0.7251 (5) | 0.48691 (14) | 0.0397 (5) | |
H3'A | 0.194 (2) | 0.668 (5) | 0.496 (2) | 0.048* | |
C4' | 0.15037 (18) | 0.9984 (5) | 0.52306 (17) | 0.0299 (6) | |
H4' | 0.100 (2) | 1.007 (5) | 0.488 (2) | 0.036* | |
O4' | 0.21887 (17) | 1.0369 (5) | 0.48350 (16) | 0.0479 (7) | |
H4'A | 0.224 (3) | 0.973 (5) | 0.456 (2) | 0.057* | |
C5' | 0.14655 (18) | 1.1116 (5) | 0.58916 (17) | 0.0288 (6) | |
H5' | 0.191 (2) | 1.095 (4) | 0.619 (2) | 0.035* | |
C6' | 0.1390 (2) | 1.2835 (5) | 0.5646 (2) | 0.0374 (7) | |
H6'A | 0.081 (2) | 1.310 (5) | 0.555 (2) | 0.045* | |
H6'B | 0.163 (2) | 1.298 (5) | 0.515 (2) | 0.045* | |
O6' | 0.18419 (15) | 1.3826 (5) | 0.61404 (15) | 0.0439 (6) | |
H6' | 0.161 (2) | 1.472 (5) | 0.620 (2) | 0.053* | |
O5 | 0.44562 (18) | 1.0097 (5) | 0.5972 (2) | 0.0594 (8) | |
H5A | 0.427 (3) | 1.068 (6) | 0.571 (3) | 0.071* | |
H5B | 0.417 (3) | 0.965 (6) | 0.618 (3) | 0.071* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0323 (15) | 0.0314 (15) | 0.0410 (17) | −0.0021 (12) | 0.0033 (13) | −0.0042 (13) |
O1 | 0.0291 (9) | 0.0391 (11) | 0.0278 (10) | 0.0048 (9) | 0.0040 (8) | 0.0014 (9) |
C2 | 0.0335 (14) | 0.0387 (16) | 0.0254 (13) | 0.0030 (12) | 0.0034 (11) | −0.0043 (12) |
C3 | 0.0329 (15) | 0.0350 (15) | 0.0314 (14) | 0.0042 (12) | 0.0016 (12) | 0.0068 (13) |
C4 | 0.0297 (13) | 0.0278 (13) | 0.0381 (16) | 0.0022 (12) | 0.0002 (12) | 0.0049 (13) |
C5 | 0.0250 (12) | 0.0283 (13) | 0.0337 (14) | 0.0010 (10) | 0.0049 (11) | −0.0005 (12) |
C6 | 0.0381 (16) | 0.0298 (14) | 0.0402 (17) | 0.0004 (13) | 0.0082 (13) | −0.0041 (14) |
C7 | 0.0411 (18) | 0.0473 (18) | 0.0370 (17) | 0.0010 (15) | 0.0125 (14) | −0.0056 (15) |
C8 | 0.0329 (15) | 0.0439 (18) | 0.0343 (15) | 0.0029 (13) | 0.0086 (12) | 0.0047 (14) |
C9 | 0.0263 (13) | 0.0324 (14) | 0.0404 (16) | −0.0031 (11) | 0.0056 (11) | 0.0034 (13) |
C10 | 0.0229 (12) | 0.0277 (13) | 0.0332 (14) | −0.0019 (10) | 0.0019 (10) | −0.0013 (12) |
C11 | 0.0350 (15) | 0.0315 (15) | 0.051 (2) | 0.0017 (13) | 0.0064 (14) | 0.0071 (15) |
C12 | 0.0333 (16) | 0.0337 (16) | 0.067 (3) | 0.0013 (14) | −0.0034 (16) | 0.0014 (17) |
C13 | 0.0317 (15) | 0.0404 (17) | 0.0440 (18) | 0.0003 (13) | 0.0053 (13) | 0.0015 (14) |
C14 | 0.0452 (18) | 0.047 (2) | 0.0421 (18) | 0.0094 (15) | 0.0050 (15) | −0.0020 (16) |
O2 | 0.0432 (13) | 0.0437 (14) | 0.0743 (19) | 0.0119 (12) | 0.0034 (13) | −0.0013 (14) |
C15 | 0.045 (2) | 0.066 (3) | 0.066 (3) | 0.0082 (19) | 0.0021 (18) | −0.027 (2) |
C16 | 0.051 (2) | 0.073 (3) | 0.0381 (18) | 0.004 (2) | 0.0014 (16) | −0.002 (2) |
C17 | 0.064 (3) | 0.067 (3) | 0.048 (2) | 0.010 (2) | 0.020 (2) | 0.018 (2) |
C18 | 0.0356 (15) | 0.0400 (17) | 0.0453 (19) | 0.0076 (14) | 0.0027 (13) | 0.0019 (15) |
O3 | 0.0311 (11) | 0.0497 (14) | 0.0709 (18) | 0.0123 (11) | 0.0049 (11) | 0.0092 (14) |
O4 | 0.0505 (14) | 0.0426 (14) | 0.0675 (17) | 0.0100 (12) | 0.0040 (13) | 0.0159 (14) |
C19 | 0.0297 (15) | 0.0389 (17) | 0.056 (2) | 0.0052 (13) | 0.0025 (14) | 0.0040 (16) |
C20 | 0.0281 (14) | 0.047 (2) | 0.066 (2) | −0.0101 (14) | 0.0073 (15) | 0.0078 (19) |
C1' | 0.0302 (13) | 0.0276 (13) | 0.0276 (13) | 0.0036 (11) | 0.0039 (11) | 0.0006 (11) |
O1' | 0.0351 (11) | 0.0228 (9) | 0.0381 (11) | 0.0032 (8) | 0.0095 (9) | −0.0012 (9) |
C2' | 0.0301 (13) | 0.0241 (13) | 0.0302 (14) | 0.0031 (11) | 0.0059 (11) | −0.0006 (11) |
O2' | 0.0417 (12) | 0.0243 (10) | 0.0563 (15) | 0.0031 (10) | 0.0134 (11) | 0.0039 (10) |
C3' | 0.0290 (13) | 0.0239 (13) | 0.0328 (14) | −0.0004 (10) | 0.0055 (11) | −0.0056 (11) |
O3' | 0.0451 (12) | 0.0343 (11) | 0.0402 (13) | 0.0049 (10) | 0.0084 (10) | −0.0120 (10) |
C4' | 0.0352 (15) | 0.0223 (12) | 0.0330 (15) | −0.0031 (11) | 0.0092 (12) | −0.0002 (11) |
O4' | 0.0547 (15) | 0.0369 (13) | 0.0545 (16) | −0.0077 (11) | 0.0302 (12) | −0.0103 (11) |
C5' | 0.0315 (14) | 0.0224 (13) | 0.0327 (14) | 0.0022 (10) | 0.0036 (11) | −0.0025 (11) |
C6' | 0.0472 (18) | 0.0231 (14) | 0.0423 (18) | 0.0008 (13) | 0.0051 (15) | 0.0038 (13) |
O6' | 0.0483 (14) | 0.0228 (10) | 0.0610 (16) | −0.0004 (10) | 0.0063 (11) | −0.0073 (11) |
O5 | 0.0452 (16) | 0.0571 (19) | 0.076 (2) | −0.0060 (13) | 0.0001 (14) | 0.0126 (16) |
Geometric parameters (Å, º) top
C1—C2 | 1.529 (4) | C15—C16 | 1.332 (7) |
C1—C10 | 1.537 (4) | C15—H15 | 0.92 (5) |
C1—H1A | 0.92 (4) | C16—H16 | 0.92 (5) |
C1—H1B | 0.95 (4) | C17—H17A | 0.94 (5) |
O1—C1' | 1.397 (3) | C17—H17B | 0.96 (5) |
O1—C2 | 1.444 (4) | C17—H17C | 0.97 (5) |
C2—C3 | 1.511 (4) | C18—O4 | 1.206 (4) |
C2—H2 | 0.93 (4) | C18—O3 | 1.346 (4) |
C3—C4 | 1.323 (4) | O3—C19 | 1.482 (5) |
C3—H3 | 0.90 (4) | C19—H19A | 1.01 (4) |
C4—C18 | 1.487 (4) | C19—H19B | 0.96 (4) |
C4—C5 | 1.506 (4) | C20—H20A | 0.99 (5) |
C5—C10 | 1.540 (4) | C20—H20B | 1.00 (5) |
C5—C6 | 1.540 (4) | C20—H20C | 0.97 (5) |
C5—C19 | 1.553 (4) | C1'—O1' | 1.425 (3) |
C6—C7 | 1.523 (5) | C1'—C2' | 1.531 (4) |
C6—H6A | 0.93 (4) | C1'—H1' | 0.98 (4) |
C6—H6B | 0.94 (4) | O1'—C5' | 1.438 (3) |
C7—C8 | 1.532 (5) | C2'—O2' | 1.416 (4) |
C7—H7A | 0.91 (4) | C2'—C3' | 1.527 (4) |
C7—H7B | 0.96 (4) | C2'—H2' | 0.95 (4) |
C8—C17 | 1.534 (5) | O2'—H2'A | 0.80 (4) |
C8—C9 | 1.560 (5) | C3'—O3' | 1.425 (4) |
C8—H8 | 0.99 (4) | C3'—C4' | 1.526 (4) |
C9—C20 | 1.537 (4) | C3'—H3' | 0.99 (4) |
C9—C10 | 1.553 (4) | O3'—H3'A | 0.85 (3) |
C9—C11 | 1.554 (4) | C4'—O4' | 1.424 (4) |
C10—H10 | 0.98 (4) | C4'—C5' | 1.517 (4) |
C11—C12 | 1.535 (5) | C4'—H4' | 1.05 (4) |
C11—H11A | 1.03 (4) | O4'—H4'A | 0.74 (4) |
C11—H11B | 0.93 (4) | C5'—C6' | 1.519 (4) |
C12—C13 | 1.508 (5) | C5'—H5' | 0.91 (4) |
C12—H12A | 0.86 (5) | C6'—O6' | 1.415 (4) |
C12—H12B | 1.06 (5) | C6'—H6'A | 1.01 (4) |
C13—C14 | 1.327 (5) | C6'—H6'B | 0.99 (4) |
C13—C16 | 1.418 (5) | O6'—H6' | 0.86 (4) |
C14—O2 | 1.378 (5) | O5—H5A | 0.73 (4) |
C14—H14 | 0.95 (4) | O5—H5B | 0.72 (4) |
O2—C15 | 1.349 (5) | | |
| | | |
C2—C1—C10 | 109.2 (2) | O2—C14—H14 | 112 (3) |
C2—C1—H1A | 106 (2) | C15—O2—C14 | 105.2 (3) |
C10—C1—H1A | 113 (2) | C16—C15—O2 | 110.5 (4) |
C2—C1—H1B | 109 (2) | C16—C15—H15 | 130 (3) |
C10—C1—H1B | 110 (2) | O2—C15—H15 | 119 (3) |
H1A—C1—H1B | 110 (3) | C15—C16—C13 | 107.6 (4) |
C1'—O1—C2 | 117.9 (2) | C15—C16—H16 | 132 (3) |
O1—C2—C3 | 112.9 (3) | C13—C16—H16 | 120 (3) |
O1—C2—C1 | 107.3 (3) | C8—C17—H17A | 111 (3) |
C3—C2—C1 | 110.0 (2) | C8—C17—H17B | 111 (3) |
O1—C2—H2 | 112 (2) | H17A—C17—H17B | 107 (4) |
C3—C2—H2 | 108 (2) | C8—C17—H17C | 105 (3) |
C1—C2—H2 | 106 (2) | H17A—C17—H17C | 109 (4) |
C4—C3—C2 | 120.6 (3) | H17B—C17—H17C | 114 (4) |
C4—C3—H3 | 119 (2) | O4—C18—O3 | 121.8 (3) |
C2—C3—H3 | 120 (2) | O4—C18—C4 | 131.2 (3) |
C3—C4—C18 | 122.6 (3) | O3—C18—C4 | 106.9 (3) |
C3—C4—C5 | 127.5 (3) | C18—O3—C19 | 110.1 (3) |
C18—C4—C5 | 106.3 (3) | O3—C19—C5 | 103.4 (3) |
C4—C5—C10 | 109.9 (2) | O3—C19—H19A | 105 (2) |
C4—C5—C6 | 113.1 (3) | C5—C19—H19A | 116 (2) |
C10—C5—C6 | 107.0 (2) | O3—C19—H19B | 110 (3) |
C4—C5—C19 | 96.8 (2) | C5—C19—H19B | 113 (3) |
C10—C5—C19 | 121.7 (3) | H19A—C19—H19B | 109 (3) |
C6—C5—C19 | 108.3 (3) | C9—C20—H20A | 109 (3) |
C7—C6—C5 | 110.0 (3) | C9—C20—H20B | 110 (3) |
C7—C6—H6A | 112 (2) | H20A—C20—H20B | 114 (3) |
C5—C6—H6A | 107 (2) | C9—C20—H20C | 111 (3) |
C7—C6—H6B | 107 (3) | H20A—C20—H20C | 105 (4) |
C5—C6—H6B | 109 (2) | H20B—C20—H20C | 109 (4) |
H6A—C6—H6B | 112 (4) | O1—C1'—O1' | 108.1 (2) |
C6—C7—C8 | 114.7 (3) | O1—C1'—C2' | 114.5 (2) |
C6—C7—H7A | 114 (3) | O1'—C1'—C2' | 109.7 (2) |
C8—C7—H7A | 104 (3) | O1—C1'—H1' | 108 (2) |
C6—C7—H7B | 112 (2) | O1'—C1'—H1' | 108 (2) |
C8—C7—H7B | 108 (3) | C2'—C1'—H1' | 109 (2) |
H7A—C7—H7B | 103 (3) | C1'—O1'—C5' | 113.1 (2) |
C7—C8—C17 | 108.2 (3) | O2'—C2'—C3' | 109.7 (2) |
C7—C8—C9 | 112.7 (3) | O2'—C2'—C1' | 110.0 (2) |
C17—C8—C9 | 114.4 (3) | C3'—C2'—C1' | 108.5 (2) |
C7—C8—H8 | 108 (2) | O2'—C2'—H2' | 112 (2) |
C17—C8—H8 | 107 (2) | C3'—C2'—H2' | 106 (2) |
C9—C8—H8 | 106 (2) | C1'—C2'—H2' | 111 (2) |
C20—C9—C10 | 111.6 (3) | C2'—O2'—H2'A | 104 (3) |
C20—C9—C11 | 106.1 (3) | O3'—C3'—C4' | 108.6 (2) |
C10—C9—C11 | 109.9 (2) | O3'—C3'—C2' | 111.0 (2) |
C20—C9—C8 | 111.9 (3) | C4'—C3'—C2' | 109.3 (2) |
C10—C9—C8 | 107.0 (2) | O3'—C3'—H3' | 105 (2) |
C11—C9—C8 | 110.2 (3) | C4'—C3'—H3' | 109 (2) |
C1—C10—C5 | 110.5 (2) | C2'—C3'—H3' | 114 (2) |
C1—C10—C9 | 117.1 (2) | C3'—O3'—H3'A | 103 (3) |
C5—C10—C9 | 115.3 (2) | O4'—C4'—C5' | 107.6 (2) |
C1—C10—H10 | 107 (2) | O4'—C4'—C3' | 111.0 (3) |
C5—C10—H10 | 104 (2) | C5'—C4'—C3' | 110.4 (2) |
C9—C10—H10 | 102 (2) | O4'—C4'—H4' | 111 (2) |
C12—C11—C9 | 117.8 (3) | C5'—C4'—H4' | 111 (2) |
C12—C11—H11A | 107 (2) | C3'—C4'—H4' | 106 (2) |
C9—C11—H11A | 108 (2) | C4'—O4'—H4'A | 107 (4) |
C12—C11—H11B | 108 (2) | O1'—C5'—C4' | 108.7 (2) |
C9—C11—H11B | 108 (3) | O1'—C5'—C6' | 107.9 (2) |
H11A—C11—H11B | 109 (3) | C4'—C5'—C6' | 112.7 (3) |
C13—C12—C11 | 110.9 (3) | O1'—C5'—H5' | 109 (2) |
C13—C12—H12A | 112 (3) | C4'—C5'—H5' | 107 (2) |
C11—C12—H12A | 111 (3) | C6'—C5'—H5' | 112 (2) |
C13—C12—H12B | 104 (2) | O6'—C6'—C5' | 110.5 (3) |
C11—C12—H12B | 115 (2) | O6'—C6'—H6'A | 118 (2) |
H12A—C12—H12B | 102 (4) | C5'—C6'—H6'A | 109 (2) |
C14—C13—C16 | 105.0 (3) | O6'—C6'—H6'B | 104 (2) |
C14—C13—C12 | 127.7 (4) | C5'—C6'—H6'B | 110 (2) |
C16—C13—C12 | 127.1 (4) | H6'A—C6'—H6'B | 106 (3) |
C13—C14—O2 | 111.6 (3) | C6'—O6'—H6' | 111 (3) |
C13—C14—H14 | 136 (3) | H5A—O5—H5B | 113 (6) |
| | | |
C1'—O1—C2—C3 | −86.6 (3) | C11—C12—C13—C14 | −101.9 (4) |
C1'—O1—C2—C1 | 152.1 (2) | C11—C12—C13—C16 | 73.1 (5) |
C10—C1—C2—O1 | 68.9 (3) | C16—C13—C14—O2 | −0.5 (4) |
C10—C1—C2—C3 | −54.2 (3) | C12—C13—C14—O2 | 175.4 (3) |
O1—C2—C3—C4 | −98.4 (3) | C13—C14—O2—C15 | 0.7 (4) |
C1—C2—C3—C4 | 21.4 (4) | C14—O2—C15—C16 | −0.6 (5) |
C2—C3—C4—C18 | −152.7 (3) | O2—C15—C16—C13 | 0.3 (5) |
C2—C3—C4—C5 | 3.1 (5) | C14—C13—C16—C15 | 0.1 (5) |
C3—C4—C5—C10 | 6.2 (4) | C12—C13—C16—C15 | −175.8 (4) |
C18—C4—C5—C10 | 165.2 (3) | C3—C4—C18—O4 | −41.4 (6) |
C3—C4—C5—C6 | 125.7 (3) | C5—C4—C18—O4 | 158.4 (4) |
C18—C4—C5—C6 | −75.4 (3) | C3—C4—C18—O3 | 135.0 (3) |
C3—C4—C5—C19 | −121.1 (4) | C5—C4—C18—O3 | −25.2 (4) |
C18—C4—C5—C19 | 37.9 (3) | O4—C18—O3—C19 | 176.0 (4) |
C4—C5—C6—C7 | −178.6 (3) | C4—C18—O3—C19 | −0.8 (4) |
C10—C5—C6—C7 | −57.4 (3) | C18—O3—C19—C5 | 25.4 (4) |
C19—C5—C6—C7 | 75.4 (3) | C4—C5—C19—O3 | −37.3 (3) |
C5—C6—C7—C8 | 55.8 (4) | C10—C5—C19—O3 | −155.8 (3) |
C6—C7—C8—C17 | −179.7 (4) | C6—C5—C19—O3 | 79.8 (3) |
C6—C7—C8—C9 | −52.1 (4) | C2—O1—C1'—O1' | 59.3 (3) |
C7—C8—C9—C20 | −73.5 (3) | C2—O1—C1'—C2' | −63.3 (3) |
C17—C8—C9—C20 | 50.7 (4) | O1—C1'—O1'—C5' | 171.5 (2) |
C7—C8—C9—C10 | 49.1 (3) | C2'—C1'—O1'—C5' | −63.1 (3) |
C17—C8—C9—C10 | 173.4 (3) | O1—C1'—C2'—O2' | −59.8 (3) |
C7—C8—C9—C11 | 168.7 (3) | O1'—C1'—C2'—O2' | 178.5 (2) |
C17—C8—C9—C11 | −67.1 (4) | O1—C1'—C2'—C3' | −179.8 (2) |
C2—C1—C10—C5 | 65.2 (3) | O1'—C1'—C2'—C3' | 58.6 (3) |
C2—C1—C10—C9 | −160.1 (2) | O2'—C2'—C3'—O3' | 64.4 (3) |
C4—C5—C10—C1 | −39.4 (3) | C1'—C2'—C3'—O3' | −175.5 (2) |
C6—C5—C10—C1 | −162.6 (2) | O2'—C2'—C3'—C4' | −175.9 (3) |
C19—C5—C10—C1 | 72.4 (3) | C1'—C2'—C3'—C4' | −55.8 (3) |
C4—C5—C10—C9 | −175.0 (2) | O3'—C3'—C4'—O4' | −63.3 (3) |
C6—C5—C10—C9 | 61.8 (3) | C2'—C3'—C4'—O4' | 175.5 (3) |
C19—C5—C10—C9 | −63.3 (4) | O3'—C3'—C4'—C5' | 177.4 (2) |
C20—C9—C10—C1 | −66.7 (4) | C2'—C3'—C4'—C5' | 56.3 (3) |
C11—C9—C10—C1 | 50.8 (3) | C1'—O1'—C5'—C4' | 61.8 (3) |
C8—C9—C10—C1 | 170.5 (3) | C1'—O1'—C5'—C6' | −175.7 (2) |
C20—C9—C10—C5 | 65.9 (4) | O4'—C4'—C5'—O1' | −178.7 (3) |
C11—C9—C10—C5 | −176.6 (3) | C3'—C4'—C5'—O1' | −57.4 (3) |
C8—C9—C10—C5 | −56.9 (3) | O4'—C4'—C5'—C6' | 61.8 (3) |
C20—C9—C11—C12 | 176.9 (3) | C3'—C4'—C5'—C6' | −176.9 (3) |
C10—C9—C11—C12 | 56.0 (4) | O1'—C5'—C6'—O6' | 98.5 (3) |
C8—C9—C11—C12 | −61.7 (4) | C4'—C5'—C6'—O6' | −141.5 (3) |
C9—C11—C12—C13 | −170.8 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2′—H2′A···O5i | 0.80 (4) | 1.91 (4) | 2.688 (4) | 166 (4) |
O3′—H3′A···O4′ii | 0.85 (3) | 1.87 (4) | 2.721 (4) | 178 (4) |
O4′—H4′A···O6′ii | 0.74 (4) | 2.17 (4) | 2.769 (3) | 139 (5) |
O6′—H6′···O2′iii | 0.86 (4) | 1.90 (4) | 2.741 (3) | 166 (4) |
O5—H5A···O3′iv | 0.73 (4) | 2.14 (4) | 2.854 (4) | 165 (6) |
O5—H5B···O4v | 0.72 (4) | 2.13 (4) | 2.826 (4) | 162 (6) |
Symmetry codes: (i) x−1/2, y−1/2, z; (ii) −x+1/2, y−1/2, −z+1; (iii) x, y+1, z; (iv) −x+1/2, y+1/2, −z+1; (v) x+1/2, y−1/2, z. |
Experimental details
Crystal data |
Chemical formula | C26H36O9·H2O |
Mr | 510.56 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 293 |
a, b, c (Å) | 16.997 (2), 8.441 (1), 17.763 (1) |
β (°) | 92.57 (1) |
V (Å3) | 2545.9 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.60 × 0.50 × 0.20 |
|
Data collection |
Diffractometer | Siemens P4/PC diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8034, 7373, 4762 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.703 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.143, 1.03 |
No. of reflections | 7373 |
No. of parameters | 439 |
No. of restraints | 6 |
H-atom treatment | Only H-atom coordinates refined |
Δρmax, Δρmin (e Å−3) | 0.23, −0.20 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2'—H2'A···O5i | 0.80 (4) | 1.91 (4) | 2.688 (4) | 166 (4) |
O3'—H3'A···O4'ii | 0.85 (3) | 1.87 (4) | 2.721 (4) | 178 (4) |
O4'—H4'A···O6'ii | 0.74 (4) | 2.17 (4) | 2.769 (3) | 139 (5) |
O6'—H6'···O2'iii | 0.86 (4) | 1.90 (4) | 2.741 (3) | 166 (4) |
O5—H5A···O3'iv | 0.73 (4) | 2.14 (4) | 2.854 (4) | 165 (6) |
O5—H5B···O4v | 0.72 (4) | 2.13 (4) | 2.826 (4) | 162 (6) |
Symmetry codes: (i) x−1/2, y−1/2, z; (ii) −x+1/2, y−1/2, −z+1; (iii) x, y+1, z; (iv) −x+1/2, y+1/2, −z+1; (v) x+1/2, y−1/2, z. |
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In the course of our phytochemical investigation of the Salvia genus (Maldonado et al., 1992; Ortega et al., 1995), we have investigated S. amarissima Ort. (Family Labiatae, section Uricae subgenus Calosphace). From an acetone extract of the aerial parts of this plant we isolated the new diterpenoid glycoside amarisolide, (I), this being the first report of the occurrence of this type of glycoside in a Salvia species. \sch
A spectroscopic study of the title compound (Fig. 1) revealed it to be a glucosyl derivative of a trans-neo-clerodane diterpene, and led to the establishment of its relative configuration (Maldonado et al., 1996). We here confirm that finding and report the absolute configuration of this compound.
Although the absolute configuration could not be determined from the diffraction data alone, it was established by the known configuration of the β-D-glucose moiety attached at C2 and shows that the molecule is comprised of a tricyclic skeleton with the six-membered rings trans-fused [τ1,10,5,4 = -39.4 (3)° and τ9,10,5,6 = 61.8 (3)°]. The six-membered sugar ring exhibits torsion angles of -63.1 (3) to 61.8 (3)°, which are close to the ideal value of 56° for the chair conformation (Bucourt & Hainaut, 1965). The deviations may result from the extensive hydrogen-bonding network involving the sugar hydroxyl groups. The cyclohexene and cyclohexane rings exhibit intermediate conformations between half-chair and sofa for the former and a slightly distorted chair for the later [Cremer and Pople (1975) parameters: ϕ = 344.1 (5)°, θ = 52.3 (4)° QT = 0.531 (3) Å and ϕ = 349 (3)°, θ = 6.5 (4)° QT = 0.577 (4) Å, respectively]. The five-membered lactone ring adopts an envelope conformation [ϕ = 288.7 (6)°, q2 = 0.401 (4) Å] with C5 as a flap. Both methyl groups are α-oriented, while the sugar moiety at C2 and the fully extended [τ9,11,12,13 = -170.8 (3)°] side chain are β-oriented.
The packing scheme may be described as follows: layers of glycoside molecules approximately parallel to the [5 0 3] plane are formed by hydrogen bonding among the hydroxyl groups O3'-H3'A, O4'-H4'A and O6'-H6' of the sugar moiety with the corresponding oxygen atoms O2', O6' and O4', respectively, of symmetry-related molecules. Water molecules interconnect these layers with three hydrogen bonds acting as donor towards the lactone carbonyl atom O4 and the hydroxyl atom O3', while the water atom O5 acts as acceptor for the hydrogen atom from the hydroxyl group O2'-H2'A (Table 1).