Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270113031557/cu3043sup1.cif | |
Rietveld powder data file (CIF format) https://doi.org/10.1107/S0108270113031557/cu3043Msup2.rtv | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270113031557/cu3043Msup4.cml | |
Rietveld powder data file (CIF format) https://doi.org/10.1107/S0108270113031557/cu3043Osup3.rtv | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270113031557/cu3043Osup5.cml |
CCDC references: 972743; 972744
3-Hydroxypyridine derivatives are structural analogs of the compounds of the vitamin B6 family, which are involved in the metabolisms of humans and animals. One of the most effective drugs distributed in Russia belonging to this group is ethylmethylhydroxypyridine succinate (Mexidol, manufactured by Pharmasoft Pharmaceutical, and Mexicor, manufactured by Ecopharminvest), which is used in neurology for acute and chronic brain circulatory insufficiency (Voronina, 1992, 2004). The crystal structures of two succinic acid derivatives of 2-ethyl-3-hydroxy-6-methylpyridine have been reported (Lyakhov et al., 2012). Recently, in a search for new analogs of Mexidol, Yasnetsov et al. (2010) have obtained a new compound, namely 2-ethyl-3-hydroxy-6-methylpyridinium hydrogen N-acetyl-L-glutamate, (I). It has been established that (I) exhibits antihypoxic activity on various models of acute hypoxia (hypoxia is a pathological condition in which the body, or a part of the body, is deprived of an adequate oxygen supply) in mice and produces an equal or larger effect than Mexidol (Yasnetsov et al., 2012). Herewith we report the crystal structures of monoclinic (M) and orthorhombic (O) polymorphs of (I) obtained in different solvent systems and determined from laboratory powder diffraction data.
The original synthetic procedure reported by Yasnetsov et al. (2010, 2012) was modified in order to increase the yield of crystalline product.
(a) For the preparation of the orthorhombic polymorph, 20% solutions of 2-ethyl-3-hydroxy-6-methylpyridine and N-acetyl-L-glutamic acid in ethanol were mixed in equimolar amounts and stirred for 25 min at 313 K. The light-yellow solution was filtered and evaporated in vacuo at 313 K to a half of its initial volume. The resulting liquid was added dropwise to a threefold volume of acetone cooled to 263 K. The cold mixture was stirred for 3 h and kept for 12 h in a refrigerator. The crystalline precipitate was filtered off and dried in vacuo at 313 K.
b) For the preparation of the monoclinic polymorph, equimolar amounts of 20% solutions of 2-ethyl-3-hydroxy-6-methylpyridine and N-acetyl-L-glutamic acid in ethanol were mixed and stirred for 25 min at 313 K. The light-yellow solution was filtered and the solvent was removed in vacuo at 313 K. The resulting oil was dissolved in the minimal amount of methanol and added dropwise to cold acetone at 263 K. The mixture was stirred in cold for 3 h and kept overnight in a refrigerator. The crystalline precipitate was filtered off and dried in vacuo at 313 K.
IR absorption spectra of M, O and the initial acid and base were recorded in the wavenumber range 3000–400 cm-1 with a resolution of 2 cm-1 using a Nicolet iS10 (Thermo Scientific) spectrometer with KBr pellets. Absorption maxima in the 1800–1300 cm-1 region: M, 1715, 1650, 1587, 1543, 1452, 1426, 1400, 1371, 1352, 1319s h, 1300 cm-1; O, 1713, 1647, 1587, 1547, 1452, 1420, 1402, 1373, 1354, 1313s h, 1301 cm-1.
Crystal data, data collection and structure refinement details are summarized in Table 1. X-ray powder diffraction data were collected using a Panalytical EMPYREAN instrument with a linear X'celerator detector using nonmonochromated Cu Kα radiation. The unit-cell dimensions for both compounds were determined using three indexing programs: TREOR90 (Werner et al., 1985), ITO (Visser et al., 1969) and AUTOX (Zlokazov, 1992, 1995). Based on systematic extinctions, the space groups for M and O were determined as P21 and P212121, respectively. The unit-cell parameters and space groups were further tested using a Pawley fit (Pawley, 1981), which gave Rp/Rwp of 0.023/0.031 for M and 0.029/0.039 for O, and confirmed by crystal structure solution.
The crystal structures were solved using a simulated annealing technique (Zhukov et al., 2001). The initial molecular models for the 2-ethyl-3-hydroxy-6-methylpyridinium cation and hydrogen N-acetyl-L-glutamate anion were taken from the Cambridge Structural Database (CSD, Version 5.33; Allen et al., 2002). In the simulated annealing runs (without H atoms), the total number of the varied degrees of freedom (DOF) for O was 19 (six translational, six orientational and seven torsional). For M, the number of DOF was 18, because one translational parameter was fixed to fix the origin in P21. The solutions found were fitted with the MRIA program (Zlokazov & Chernyshev, 1992) in the bond-restrained Rietveld refinement using a split-type pseudo-Voigt peak profile function (Toraya, 1986). To correct the preferred orientation in the [001] direction for both compounds, the March–Dollase (Dollase, 1986) formalism was used. Restraints were applied to the intramolecular bond lengths and contacts (<2.8 Å), the strength of the restraints was a function of interatomic separation and for intramolecular bond lengths, corresponded to an r.m.s. deviation of 0.02 Å. Additional restraints were applied to the planarity of acetylamino fragment, the carboxylic acid and carboxylate groups, and the pyridine ring with the attached atoms, with the maximal allowed deviation from the mean plane being 0.03 Å. All non-H atoms were refined isotropically. H atoms were positioned geometrically (C—H = 0.93–0.98 Å, N—H 0.86 Å and O—H 0.82 Å) and not refined. The diffraction profiles for all compounds after the final bond-restrained Rietveld refinements are shown in Fig. 4.
The IR spectra of the monoclinic (M) and orthorhombic (O) polymorphs of (I) were practically identical and in good agreement with the previously reported spectrum of salt (Yasnetsov et al., 2010). The intensive bands at 1543–1547 and 1647–1650 cm-1 present in these spectra were assigned to vibration of the COO- group of anion and the wag–stretch vibration of cation, respectively. Both these lines were absent from the IR spectra of the initial acid and base. It is impossible to predict a priori, which of two –COOH groups of the 2-acetylamino-1,5-dipentanoic acid (N-acetyl-L-glutamic acid) transforms into the carboxylate anion, because for these groups, the dissociation constants do not differ significantly (pKa1 = 3.28; pKa2 = 4.60; Academic Software, 2000). In the only known structure containing the N-acetyl-L-glutamate monoanion (Grell et al., 1998), the acidic H atom lies between two carboxylate O atoms, with a very short O···O distance [2.474 (4) Å], being slightly closer to the 1-carboxylate group.
The asymmetric parts of M and O are shown in Fig. 1. In M and O, the acidic H atoms have been positioned geometrically in order to obtain reasonable hydrogen-bonding patterns. In both polymorphs, the monoanions are linked by O—H···O hydrogen bonds, and thus the acidic H atom is located between two carboxylate O atoms. In O, one of these O atoms (O17) is involved also in an N—H···O hydrogen bond as an H-atom acceptor, and that is why the H atom is positioned at the other O atom (O23). In M, the H atom is positioned at O22 instead of at O18; the latter is sterically unfavourable because of a close contact with the amide H atom. The conformations of the anions in the crystals of the monoclinic and orthorhombic polymorphs, being similar in general, differ only in the mutual orientation of the N-acetylamino fragment and the 1-carboxylate group; the dihedral angles formed by the planes of these groups are 29.7 (5) and 67.4 (5)° for M and O, respectively.
In M, the N-acetyl-L-glutamate monoanions are linked by pairs of N—H···O and O—H···O hydrogen bonds into chains along the b-axis direction; neighbouring molecules within the chain are related by the 21 screw axis. The cations link these chains via O—H···O and N—H···O hydrogen bonds into layers parallel to (001) (Fig. 2). In O, the N-acetyl-L-glutamate monoanions are linked by O—H···O hydrogen bonds into helices along [001]; neighbouring molecules within the helix are related by the 21 screw axis. The neighbouring helical turns are linked by N—H···O hydrogen bonds. The cations link the helices by O—H···O and N—H···O hydrogen bonds, thus forming a three-dimensional network (Fig. 3).
For related literature, see: Academic Software (2000); Allen (2002); Dollase (1986); Grell et al. (1998); Lyakhov et al. (2012); Pawley (1981); Toraya (1986); Visser (1969); Voronina (1992, 2004); Werner et al. (1985); Yasnetsov, Vic, Skachilova, Sernov, Voronina & Yasnetsov (2012); Yasnetsov, Vic, Skachilova, Voronina & Yasnetsov (2010); Zhukov et al. (2001); Zlokazov (1992, 1995); Zlokazov & Chernyshev (1992).
For both compounds, data collection: DataCollector (PANalytical, 2010); cell refinement: MRIA (Zlokazov & Chernyshev, 1992). Data reduction: DataCollector (PANalytical, 2010) for M; DataCollector (PANalytical, 2010)' for O. For both compounds, program(s) used to solve structure: simulated annealing (Zhukov et al., 2001); program(s) used to refine structure: MRIA (Zlokazov & Chernyshev, 1992); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2008); software used to prepare material for publication: MRIA (Zlokazov & Chernyshev, 1992) and SHELXL97 (Sheldrick, 2008).
C8H12NO+·C7H10NO5− | F(000) = 348 |
Mr = 326.35 | Dx = 1.319 Mg m−3 |
Monoclinic, P21 | Melting point = 392–393 K |
Hall symbol: P 2yb | Cu Kα radiation, λ = 1.5418 Å |
a = 12.7258 (14) Å | T = 298 K |
b = 14.4642 (16) Å | Particle morphology: plate |
c = 4.4683 (11) Å | colourless |
β = 92.528 (17)° | flat sheet, 15 × 1 mm |
V = 821.7 (2) Å3 | Specimen preparation: Prepared at 298 K and 101 kPa |
Z = 2 |
PANanalytical EMPYREAN diffractometer | Data collection mode: reflection |
Radiation source: line-focus sealed tube | Scan method: continuous |
Ni-filter monochromator | 2θmin = 4.035°, 2θmax = 80.008°, 2θstep = 0.017° |
Specimen mounting: thin layer on the non-diffracting silicon plate |
Refinement on Inet | Profile function: split-type pseudo-Voigt (Toraya, 1986) |
Least-squares matrix: full with fixed elements per cycle | 125 parameters |
Rp = 0.027 | 59 restraints |
Rwp = 0.037 | 0 constraints |
Rexp = 0.036 | H-atom parameters not refined |
RBragg = 0.087 | Weighting scheme based on measured s.u.'s |
χ2 = 1.023 | (Δ/σ)max = 0.003 |
4470 data points | Background function: Chebyshev polynomial up to the 5th order |
Excluded region(s): none | Preferred orientation correction: March–Dollase (1986) texture correction; direction of preferred orientation [001], parameter r = 1.05(1). |
C8H12NO+·C7H10NO5− | β = 92.528 (17)° |
Mr = 326.35 | V = 821.7 (2) Å3 |
Monoclinic, P21 | Z = 2 |
a = 12.7258 (14) Å | Cu Kα radiation, λ = 1.5418 Å |
b = 14.4642 (16) Å | T = 298 K |
c = 4.4683 (11) Å | flat sheet, 15 × 1 mm |
PANanalytical EMPYREAN diffractometer | Scan method: continuous |
Specimen mounting: thin layer on the non-diffracting silicon plate | 2θmin = 4.035°, 2θmax = 80.008°, 2θstep = 0.017° |
Data collection mode: reflection |
Rp = 0.027 | 4470 data points |
Rwp = 0.037 | 125 parameters |
Rexp = 0.036 | 59 restraints |
RBragg = 0.087 | H-atom parameters not refined |
χ2 = 1.023 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.3965 (6) | 0.5080 | 0.5779 (19) | 0.069 (3)* | |
H1 | 0.3299 | 0.5107 | 0.5371 | 0.083* | |
C2 | 0.4538 (8) | 0.4399 (8) | 0.462 (2) | 0.075 (5)* | |
C3 | 0.5660 (8) | 0.4363 (8) | 0.507 (2) | 0.079 (5)* | |
C4 | 0.6117 (8) | 0.5080 (7) | 0.682 (2) | 0.078 (5)* | |
H4 | 0.6845 | 0.5111 | 0.7087 | 0.094* | |
C5 | 0.5511 (8) | 0.5726 (10) | 0.812 (2) | 0.081 (4)* | |
H5 | 0.5818 | 0.6174 | 0.9372 | 0.097* | |
C6 | 0.4422 (8) | 0.5713 (9) | 0.756 (2) | 0.073 (4)* | |
O7 | 0.6281 (5) | 0.3746 (5) | 0.4043 (15) | 0.071 (2)* | |
H7 | 0.6889 | 0.3866 | 0.4588 | 0.107* | |
C8 | 0.3925 (8) | 0.3709 (8) | 0.278 (2) | 0.076 (4)* | |
H8A | 0.4272 | 0.3642 | 0.0902 | 0.091* | |
H8B | 0.3239 | 0.3979 | 0.2303 | 0.091* | |
C9 | 0.3741 (9) | 0.2749 (8) | 0.396 (3) | 0.079 (4)* | |
H9A | 0.3334 | 0.2400 | 0.2501 | 0.119* | |
H9B | 0.3367 | 0.2788 | 0.5779 | 0.119* | |
H9C | 0.4405 | 0.2449 | 0.4367 | 0.119* | |
C10 | 0.3719 (8) | 0.6429 (7) | 0.879 (3) | 0.082 (5)* | |
H10A | 0.3003 | 0.6299 | 0.8161 | 0.123* | |
H10B | 0.3914 | 0.7027 | 0.8073 | 0.123* | |
H10C | 0.3786 | 0.6420 | 1.0941 | 0.123* | |
C11 | 1.0301 (9) | 0.4831 (7) | 0.606 (2) | 0.084 (5)* | |
H11 | 1.0023 | 0.4885 | 0.3989 | 0.101* | |
N12 | 0.9745 (6) | 0.4081 (6) | 0.7577 (18) | 0.077 (3)* | |
H12 | 1.0086 | 0.3779 | 0.8965 | 0.093* | |
C13 | 0.8762 (9) | 0.3845 (8) | 0.694 (2) | 0.082 (4)* | |
O14 | 0.8257 (5) | 0.4251 (4) | 0.5032 (15) | 0.068 (3)* | |
C15 | 0.8331 (7) | 0.3029 (7) | 0.867 (2) | 0.078 (4)* | |
H15A | 0.7613 | 0.3148 | 0.9123 | 0.117* | |
H15B | 0.8744 | 0.2946 | 1.0503 | 0.117* | |
H15C | 0.8366 | 0.2479 | 0.7477 | 0.117* | |
C16 | 1.1452 (8) | 0.4558 (7) | 0.608 (2) | 0.076 (4)* | |
O17 | 1.1975 (5) | 0.5027 (4) | 0.4444 (15) | 0.076 (3)* | |
O18 | 1.1655 (5) | 0.3881 (5) | 0.7717 (14) | 0.079 (3)* | |
C19 | 1.0217 (8) | 0.5767 (9) | 0.763 (2) | 0.077 (4)* | |
H19A | 1.0607 | 0.6221 | 0.6529 | 0.093* | |
H19B | 1.0549 | 0.5718 | 0.9619 | 0.093* | |
C20 | 0.9091 (8) | 0.6118 (7) | 0.791 (2) | 0.078 (5)* | |
H20A | 0.8722 | 0.6081 | 0.5971 | 0.094* | |
H20B | 0.8730 | 0.5718 | 0.9277 | 0.094* | |
C21 | 0.9042 (8) | 0.7077 (8) | 0.901 (2) | 0.085 (4)* | |
O22 | 0.8377 (5) | 0.7150 (4) | 1.1060 (14) | 0.071 (3)* | |
H22 | 0.8360 | 0.7687 | 1.1642 | 0.107* | |
O23 | 0.9520 (5) | 0.7732 (5) | 0.8196 (16) | 0.072 (3)* |
N1—C6 | 1.329 (14) | C11—N12 | 1.475 (14) |
N1—C2 | 1.344 (14) | C11—C16 | 1.517 (15) |
N1—H1 | 0.86 | C11—C19 | 1.530 (16) |
C2—C3 | 1.434 (14) | C11—H11 | 0.98 |
C2—C8 | 1.490 (15) | N12—C13 | 1.316 (14) |
C3—O7 | 1.289 (13) | N12—H12 | 0.86 |
C3—C4 | 1.409 (15) | C13—O14 | 1.199 (13) |
C4—C5 | 1.359 (16) | C13—C15 | 1.526 (15) |
C4—H4 | 0.93 | C15—H15A | 0.96 |
C5—C6 | 1.397 (15) | C15—H15B | 0.96 |
C5—H5 | 0.93 | C15—H15C | 0.96 |
C6—C10 | 1.490 (16) | C16—O17 | 1.215 (13) |
O7—H7 | 0.82 | C16—O18 | 1.243 (13) |
C8—C9 | 1.507 (16) | C19—C20 | 1.531 (14) |
C8—H8A | 0.97 | C19—H19A | 0.97 |
C8—H8B | 0.97 | C19—H19B | 0.97 |
C9—H9A | 0.96 | C20—C21 | 1.473 (15) |
C9—H9B | 0.96 | C20—H20A | 0.97 |
C9—H9C | 0.96 | C20—H20B | 0.97 |
C10—H10A | 0.96 | C21—O23 | 1.191 (13) |
C10—H10B | 0.96 | C21—O22 | 1.278 (13) |
C10—H10C | 0.96 | O22—H22 | 0.82 |
C6—N1—C2 | 120.4 (9) | N12—C11—C16 | 106.8 (8) |
C6—N1—H1 | 119.8 | N12—C11—C19 | 113.3 (9) |
C2—N1—H1 | 119.8 | C16—C11—C19 | 108.4 (9) |
N1—C2—C3 | 121.7 (10) | N12—C11—H11 | 109.4 |
N1—C2—C8 | 115.1 (9) | C16—C11—H11 | 109.4 |
C3—C2—C8 | 123.2 (10) | C19—C11—H11 | 109.4 |
O7—C3—C4 | 117.5 (9) | C13—N12—C11 | 124.3 (9) |
O7—C3—C2 | 126.7 (10) | C13—N12—H12 | 117.9 |
C4—C3—C2 | 115.8 (10) | C11—N12—H12 | 117.9 |
C5—C4—C3 | 121.1 (10) | O14—C13—N12 | 120.0 (10) |
C5—C4—H4 | 119.5 | O14—C13—C15 | 123.1 (10) |
C3—C4—H4 | 119.4 | N12—C13—C15 | 116.8 (9) |
C4—C5—C6 | 119.4 (11) | C13—C15—H15A | 109.5 |
C4—C5—H5 | 120.3 | C13—C15—H15B | 109.5 |
C6—C5—H5 | 120.3 | H15A—C15—H15B | 109.5 |
N1—C6—C5 | 121.4 (11) | C13—C15—H15C | 109.5 |
N1—C6—C10 | 116.5 (9) | H15A—C15—H15C | 109.5 |
C5—C6—C10 | 122.1 (11) | H15B—C15—H15C | 109.5 |
C3—O7—H7 | 109.5 | O17—C16—O18 | 133.5 (10) |
C2—C8—C9 | 120.6 (9) | O17—C16—C11 | 114.0 (9) |
C2—C8—H8A | 107.2 | O18—C16—C11 | 112.5 (9) |
C9—C8—H8A | 107.2 | C11—C19—C20 | 114.6 (9) |
C2—C8—H8B | 107.2 | C11—C19—H19A | 108.7 |
C9—C8—H8B | 107.1 | C20—C19—H19A | 108.6 |
H8A—C8—H8B | 106.8 | C11—C19—H19B | 108.6 |
C8—C9—H9A | 109.5 | C20—C19—H19B | 108.6 |
C8—C9—H9B | 109.5 | H19A—C19—H19B | 107.5 |
H9A—C9—H9B | 109.5 | C21—C20—C19 | 113.2 (9) |
C8—C9—H9C | 109.5 | C21—C20—H20A | 109.0 |
H9A—C9—H9C | 109.4 | C19—C20—H20A | 108.9 |
H9B—C9—H9C | 109.5 | C21—C20—H20B | 108.9 |
C6—C10—H10A | 109.5 | C19—C20—H20B | 108.9 |
C6—C10—H10B | 109.5 | H20A—C20—H20B | 107.8 |
H10A—C10—H10B | 109.5 | O23—C21—O22 | 121.1 (10) |
C6—C10—H10C | 109.5 | O23—C21—C20 | 128.1 (10) |
H10A—C10—H10C | 109.5 | O22—C21—C20 | 110.8 (9) |
H10B—C10—H10C | 109.4 | C21—O22—H22 | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.86 | 1.72 | 2.577 (10) | 173 |
O7—H7···O14 | 0.82 | 1.83 | 2.637 (9) | 168 |
N12—H12···O18 | 0.86 | 2.10 | 2.446 (10) | 103 |
N12—H12···O23ii | 0.86 | 2.02 | 2.845 (11) | 159 |
O22—H22···O18iii | 0.82 | 1.75 | 2.563 (9) | 171 |
Symmetry codes: (i) x−1, y, z; (ii) −x+2, y−1/2, −z+2; (iii) −x+2, y+1/2, −z+2. |
C8H12NO+·C7H10NO5− | F(000) = 696 |
Mr = 326.35 | Dx = 1.291 Mg m−3 |
Orthorhombic, P212121 | Melting point = 396–398 K |
Hall symbol: P 2ac 2ab | Cu Kα radiation, λ = 1.5418 Å |
a = 27.821 (2) Å | T = 298 K |
b = 12.0939 (15) Å | Particle morphology: plate |
c = 4.9917 (13) Å | colourless |
V = 1679.5 (5) Å3 | flat sheet, 15 × 1 mm |
Z = 4 | Specimen preparation: Prepared at 298 K and 101 kPa |
PANanalytical EMPYREAN diffractometer | Data collection mode: reflection |
Radiation source: line-focus sealed tube | Scan method: continuous |
Ni-filter monochromator | 2θmin = 4.020°, 2θmax = 79.993°, 2θstep = 0.017° |
Specimen mounting: thin layer on the non-diffracting silicon plate |
Refinement on Inet | Profile function: split-type pseudo-Voigt (Toraya, 1986) |
Least-squares matrix: full with fixed elements per cycle | 126 parameters |
Rp = 0.035 | 57 restraints |
Rwp = 0.045 | 0 constraints |
Rexp = 0.046 | H-atom parameters not refined |
RBragg = 0.071 | Weighting scheme based on measured s.u.'s |
χ2 = 0.965 | (Δ/σ)max = 0.002 |
4470 data points | Background function: Chebyshev polynomial up to the 5th order |
Excluded region(s): none | Preferred orientation correction: March–Dollase (1986) texture correction; direction of preferred orientation [001], parameter r = 1.05(1). |
C8H12NO+·C7H10NO5− | V = 1679.5 (5) Å3 |
Mr = 326.35 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.5418 Å |
a = 27.821 (2) Å | T = 298 K |
b = 12.0939 (15) Å | flat sheet, 15 × 1 mm |
c = 4.9917 (13) Å |
PANanalytical EMPYREAN diffractometer | Scan method: continuous |
Specimen mounting: thin layer on the non-diffracting silicon plate | 2θmin = 4.020°, 2θmax = 79.993°, 2θstep = 0.017° |
Data collection mode: reflection |
Rp = 0.035 | 4470 data points |
Rwp = 0.045 | 126 parameters |
Rexp = 0.046 | 57 restraints |
RBragg = 0.071 | H-atom parameters not refined |
χ2 = 0.965 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.5406 (2) | 0.5139 (6) | 0.5614 (16) | 0.072 (3)* | |
H1 | 0.5684 | 0.4873 | 0.5994 | 0.086* | |
C2 | 0.5362 (3) | 0.5884 (8) | 0.3652 (19) | 0.076 (4)* | |
C3 | 0.4912 (3) | 0.6422 (8) | 0.308 (2) | 0.080 (4)* | |
C4 | 0.4517 (3) | 0.6060 (8) | 0.462 (2) | 0.083 (3)* | |
H4 | 0.4217 | 0.6379 | 0.4349 | 0.100* | |
C5 | 0.4568 (3) | 0.5251 (7) | 0.649 (2) | 0.077 (4)* | |
H5 | 0.4302 | 0.4996 | 0.7436 | 0.093* | |
C6 | 0.5022 (3) | 0.4806 (9) | 0.699 (2) | 0.080 (4)* | |
O7 | 0.4862 (2) | 0.7204 (5) | 0.1222 (13) | 0.074 (2)* | |
H7 | 0.4581 | 0.7407 | 0.1172 | 0.111* | |
C8 | 0.5811 (4) | 0.6214 (8) | 0.2253 (19) | 0.083 (4)* | |
H8A | 0.5781 | 0.6005 | 0.0385 | 0.100* | |
H8B | 0.6073 | 0.5786 | 0.3001 | 0.100* | |
C9 | 0.5951 (4) | 0.7428 (9) | 0.236 (2) | 0.092 (4)* | |
H9A | 0.6245 | 0.7537 | 0.1395 | 0.138* | |
H9B | 0.5995 | 0.7647 | 0.4195 | 0.138* | |
H9C | 0.5701 | 0.7867 | 0.1567 | 0.138* | |
C10 | 0.5113 (3) | 0.3940 (8) | 0.899 (2) | 0.084 (4)* | |
H10A | 0.5449 | 0.3757 | 0.8999 | 0.126* | |
H10B | 0.4929 | 0.3294 | 0.8557 | 0.126* | |
H10C | 0.5021 | 0.4204 | 1.0733 | 0.126* | |
C11 | 0.6788 (3) | 0.2813 (7) | 0.628 (2) | 0.077 (3)* | |
H11 | 0.6852 | 0.2860 | 0.8205 | 0.093* | |
N12 | 0.6792 (3) | 0.1649 (5) | 0.5534 (16) | 0.078 (3)* | |
H12 | 0.6774 | 0.1488 | 0.3859 | 0.094* | |
C13 | 0.6822 (3) | 0.0827 (8) | 0.7252 (19) | 0.087 (4)* | |
O14 | 0.68400 (19) | 0.1031 (5) | 0.9736 (11) | 0.063 (2)* | |
C15 | 0.6827 (3) | −0.0307 (7) | 0.615 (2) | 0.079 (3)* | |
H15A | 0.7151 | −0.0510 | 0.5705 | 0.119* | |
H15B | 0.6630 | −0.0337 | 0.4576 | 0.119* | |
H15C | 0.6703 | −0.0812 | 0.7469 | 0.119* | |
C16 | 0.6307 (3) | 0.3325 (7) | 0.577 (2) | 0.081 (4)* | |
O17 | 0.6235 (2) | 0.4277 (5) | 0.6686 (12) | 0.069 (2)* | |
O18 | 0.59940 (19) | 0.2753 (5) | 0.4521 (12) | 0.073 (2)* | |
C19 | 0.7154 (3) | 0.3526 (8) | 0.485 (2) | 0.090 (4)* | |
H19A | 0.7129 | 0.4279 | 0.5506 | 0.108* | |
H19B | 0.7084 | 0.3532 | 0.2950 | 0.108* | |
C20 | 0.7662 (4) | 0.3110 (8) | 0.529 (2) | 0.085 (4)* | |
H20A | 0.7731 | 0.3116 | 0.7191 | 0.102* | |
H20B | 0.7682 | 0.2350 | 0.4677 | 0.102* | |
C21 | 0.8033 (3) | 0.3771 (8) | 0.388 (2) | 0.084 (4)* | |
O22 | 0.8300 (2) | 0.3331 (4) | 0.2340 (11) | 0.066 (2)* | |
O23 | 0.8073 (2) | 0.4816 (5) | 0.4410 (13) | 0.072 (2)* | |
H23 | 0.8300 | 0.5074 | 0.3557 | 0.108* |
N1—C6 | 1.331 (12) | C11—N12 | 1.456 (11) |
N1—C2 | 1.337 (12) | C11—C16 | 1.497 (13) |
N1—H1 | 0.8601 | C11—C19 | 1.512 (14) |
C2—C3 | 1.439 (13) | C11—H11 | 0.9799 |
C2—C8 | 1.485 (13) | N12—C13 | 1.315 (12) |
C3—O7 | 1.333 (12) | N12—H12 | 0.8598 |
C3—C4 | 1.410 (13) | C13—O14 | 1.265 (11) |
C4—C5 | 1.361 (14) | C13—C15 | 1.478 (13) |
C4—H4 | 0.9299 | C15—H15A | 0.9600 |
C5—C6 | 1.395 (13) | C15—H15B | 0.9600 |
C5—H5 | 0.9301 | C15—H15C | 0.9600 |
C6—C10 | 1.471 (15) | C16—O17 | 1.255 (11) |
O7—H7 | 0.8199 | C16—O18 | 1.275 (11) |
C8—C9 | 1.519 (14) | C19—C20 | 1.515 (14) |
C8—H8A | 0.9693 | C19—H19A | 0.9708 |
C8—H8B | 0.9707 | C19—H19B | 0.9691 |
C9—H9A | 0.9595 | C20—C21 | 1.483 (14) |
C9—H9B | 0.9608 | C20—H20A | 0.9702 |
C9—H9C | 0.9599 | C20—H20B | 0.9708 |
C10—H10A | 0.9602 | C21—O22 | 1.193 (12) |
C10—H10B | 0.9600 | C21—O23 | 1.297 (11) |
C10—H10C | 0.9600 | O23—H23 | 0.8205 |
C6—N1—C2 | 120.5 (8) | N12—C11—C16 | 111.3 (8) |
C6—N1—H1 | 119.8 | N12—C11—C19 | 115.2 (8) |
C2—N1—H1 | 119.7 | C16—C11—C19 | 106.6 (8) |
N1—C2—C3 | 121.9 (8) | N12—C11—H11 | 107.8 |
N1—C2—C8 | 116.7 (8) | C16—C11—H11 | 107.8 |
C3—C2—C8 | 121.1 (8) | C19—C11—H11 | 107.8 |
O7—C3—C4 | 121.2 (8) | C13—N12—C11 | 124.4 (8) |
O7—C3—C2 | 123.3 (8) | C13—N12—H12 | 117.8 |
C4—C3—C2 | 115.5 (9) | C11—N12—H12 | 117.8 |
C5—C4—C3 | 121.0 (9) | O14—C13—N12 | 119.6 (8) |
C5—C4—H4 | 119.5 | O14—C13—C15 | 122.9 (9) |
C3—C4—H4 | 119.5 | N12—C13—C15 | 117.4 (8) |
C4—C5—C6 | 119.6 (9) | C13—C15—H15A | 109.5 |
C4—C5—H5 | 120.2 | C13—C15—H15B | 109.4 |
C6—C5—H5 | 120.2 | H15A—C15—H15B | 109.5 |
N1—C6—C5 | 121.2 (9) | C13—C15—H15C | 109.5 |
N1—C6—C10 | 115.3 (8) | H15A—C15—H15C | 109.5 |
C5—C6—C10 | 123.4 (9) | H15B—C15—H15C | 109.5 |
C3—O7—H7 | 109.5 | O17—C16—O18 | 124.6 (8) |
C2—C8—C9 | 117.3 (8) | O17—C16—C11 | 117.4 (8) |
C2—C8—H8A | 108.0 | O18—C16—C11 | 118.0 (8) |
C9—C8—H8A | 108.0 | C11—C19—C20 | 111.8 (8) |
C2—C8—H8B | 107.9 | C11—C19—H19A | 109.2 |
C9—C8—H8B | 108.0 | C20—C19—H19A | 109.2 |
H8A—C8—H8B | 107.2 | C11—C19—H19B | 109.3 |
C8—C9—H9A | 109.5 | C20—C19—H19B | 109.3 |
C8—C9—H9B | 109.5 | H19A—C19—H19B | 107.9 |
H9A—C9—H9B | 109.4 | C21—C20—C19 | 113.7 (8) |
C8—C9—H9C | 109.5 | C21—C20—H20A | 108.9 |
H9A—C9—H9C | 109.5 | C19—C20—H20A | 108.9 |
H9B—C9—H9C | 109.4 | C21—C20—H20B | 108.8 |
C6—C10—H10A | 109.5 | C19—C20—H20B | 108.8 |
C6—C10—H10B | 109.5 | H20A—C20—H20B | 107.6 |
H10A—C10—H10B | 109.5 | O22—C21—O23 | 120.9 (9) |
C6—C10—H10C | 109.5 | O22—C21—C20 | 119.9 (8) |
H10A—C10—H10C | 109.5 | O23—C21—C20 | 119.2 (9) |
H10B—C10—H10C | 109.5 | C21—O23—H23 | 109.3 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17 | 0.86 | 1.73 | 2.587 (8) | 177 |
O7—H7···O18i | 0.82 | 1.69 | 2.500 (8) | 170 |
N12—H12···O14ii | 0.86 | 2.14 | 2.992 (10) | 172 |
O23—H23···O17iii | 0.82 | 1.78 | 2.600 (8) | 176 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, y, z−1; (iii) −x+3/2, −y+1, z−1/2. |
Experimental details
(M) | (O) | |
Crystal data | ||
Chemical formula | C8H12NO+·C7H10NO5− | C8H12NO+·C7H10NO5− |
Mr | 326.35 | 326.35 |
Crystal system, space group | Monoclinic, P21 | Orthorhombic, P212121 |
Temperature (K) | 298 | 298 |
a, b, c (Å) | 12.7258 (14), 14.4642 (16), 4.4683 (11) | 27.821 (2), 12.0939 (15), 4.9917 (13) |
α, β, γ (°) | 90, 92.528 (17), 90 | 90, 90, 90 |
V (Å3) | 821.7 (2) | 1679.5 (5) |
Z | 2 | 4 |
Radiation type | Cu Kα, λ = 1.5418 Å | Cu Kα, λ = 1.5418 Å |
Specimen shape, size (mm) | Flat sheet, 15 × 1 | Flat sheet, 15 × 1 |
Data collection | ||
Diffractometer | PANanalytical EMPYREAN diffractometer | PANanalytical EMPYREAN diffractometer |
Specimen mounting | Thin layer on the non-diffracting silicon plate | Thin layer on the non-diffracting silicon plate |
Data collection mode | Reflection | Reflection |
Scan method | Continuous | Continuous |
2θ values (°) | 2θmin = 4.035 2θmax = 80.008 2θstep = 0.017 | 2θmin = 4.020 2θmax = 79.993 2θstep = 0.017 |
Refinement | ||
R factors and goodness of fit | Rp = 0.027, Rwp = 0.037, Rexp = 0.036, RBragg = 0.087, χ2 = 1.023 | Rp = 0.035, Rwp = 0.045, Rexp = 0.046, RBragg = 0.071, χ2 = 0.965 |
No. of data points | 4470 | 4470 |
No. of parameters | 125 | 126 |
No. of restraints | 59 | 57 |
H-atom treatment | H-atom parameters not refined | H-atom parameters not refined |
Computer programs: , DataCollector (PANalytical, 2010)', simulated annealing (Zhukov et al., 2001), PLATON (Spek, 2009) and Mercury (Macrae et al., 2008), MRIA (Zlokazov & Chernyshev, 1992) and SHELXL97 (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.86 | 1.72 | 2.577 (10) | 173 |
O7—H7···O14 | 0.82 | 1.83 | 2.637 (9) | 168 |
N12—H12···O18 | 0.86 | 2.10 | 2.446 (10) | 103 |
N12—H12···O23ii | 0.86 | 2.02 | 2.845 (11) | 159 |
O22—H22···O18iii | 0.82 | 1.75 | 2.563 (9) | 171 |
Symmetry codes: (i) x−1, y, z; (ii) −x+2, y−1/2, −z+2; (iii) −x+2, y+1/2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17 | 0.86 | 1.73 | 2.587 (8) | 177 |
O7—H7···O18i | 0.82 | 1.69 | 2.500 (8) | 170 |
N12—H12···O14ii | 0.86 | 2.14 | 2.992 (10) | 172 |
O23—H23···O17iii | 0.82 | 1.78 | 2.600 (8) | 176 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, y, z−1; (iii) −x+3/2, −y+1, z−1/2. |
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