Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807046909/hb2555sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807046909/hb2555Isup2.hkl |
CCDC reference: 663644
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.003 Å
- R factor = 0.020
- wR factor = 0.046
- Data-to-parameter ratio = 13.0
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 2
Alert level G PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT794_ALERT_5_G Check Predicted Bond Valency for Cd1 (2) 2.08
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
For a related structure, see: Fang et al. (2006). For background, see: Qi et al. (2003).
A mixture of CdCl2.2H2O (0.5 mmol), H2pda (0.5 mmol), and H2O (500 mmol) was adjusted to pH = 7 by addition of aqueous NaOH solution, and heated at 453 K for 6 days. After the mixture was slowly cooled to room temperature, colorless blocks of (I) resulted (38% yield).
All the C-bound H atoms were positioned geometrically (C—H = 0.93 Å) and refined as riding, with Uiso(H) = 1.2Ueq(C). The water H-atoms were located in a difference Fourier map, and were refined freely.
The supramolecular networks formed by metal 1,4-benzenedicarboxylates (1,4-bdc) have been widely studied (Qi et al., 2003). However, so far, less attention has been given to the participation of p-phenylenediacrylic acid (H2pda) in such networks. The pda dianion, as an important analogue of 1,4-bdc may be a good candidate for the construction of metal–organic helical architectures. We selected pda as a bridging ligand and CdII as a central metal, generating a new zigzag chain coordination polymer, [Cd(pda)(H2O)2], (I), which is reported here.
In compound (I), the CdII atom is six-coordinated by four carboxylate atoms from two different pda ligands, and two water molecules in a very distorted octahedral environment (Fig. 1). The O1, O2, O2i and O1Wi atoms comprise the basal plane, whereas O1W and O1i occupy the axial positions of the octahedron. The Cd—O(carboxylate) distances range from 2.3251 (16) to 2.3846 (16) Å (Table 1).
As shown in Fig. 2, each pda acts as a bis-chelating ligand that binds two CdII atoms, forming a zigzag chain. The chain is decorated with water molecules which participate in O—H···O hydrogen bonds (Table 2) to link the chains together, thus forming a three-dimensional supramolecular structure (Fig. 3).
For a related structure, see: Fang et al. (2006). For background, see: Qi et al. (2003).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL (Bruker, 1998).
[Cd(C12H10O4)(H2O)2] | F(000) = 720 |
Mr = 364.62 | Dx = 1.921 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1235 reflections |
a = 11.857 (3) Å | θ = 2.0–26.1° |
b = 5.3296 (14) Å | µ = 1.75 mm−1 |
c = 20.030 (5) Å | T = 293 K |
β = 94.983 (4)° | Block, colourless |
V = 1261.0 (6) Å3 | 0.31 × 0.21 × 0.19 mm |
Z = 4 |
Bruker APEX CCD diffractometer | 1235 independent reflections |
Radiation source: fine-focus sealed tube | 1199 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
ω scans | θmax = 26.1°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −14→11 |
Tmin = 0.574, Tmax = 0.716 | k = −6→5 |
3315 measured reflections | l = −24→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.020 | Hydrogen site location: difmap (O-H) and geom (C-H) |
wR(F2) = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0216P)2 + 1.4532P] where P = (Fo2 + 2Fc2)/3 |
1235 reflections | (Δ/σ)max < 0.001 |
95 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
[Cd(C12H10O4)(H2O)2] | V = 1261.0 (6) Å3 |
Mr = 364.62 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 11.857 (3) Å | µ = 1.75 mm−1 |
b = 5.3296 (14) Å | T = 293 K |
c = 20.030 (5) Å | 0.31 × 0.21 × 0.19 mm |
β = 94.983 (4)° |
Bruker APEX CCD diffractometer | 1235 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 1199 reflections with I > 2σ(I) |
Tmin = 0.574, Tmax = 0.716 | Rint = 0.016 |
3315 measured reflections |
R[F2 > 2σ(F2)] = 0.020 | 0 restraints |
wR(F2) = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.31 e Å−3 |
1235 reflections | Δρmin = −0.35 e Å−3 |
95 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 1.12499 (19) | −0.4749 (4) | 0.83239 (11) | 0.0287 (5) | |
C2 | 1.1910 (2) | −0.2843 (4) | 0.87299 (13) | 0.0362 (6) | |
H2 | 1.2691 | −0.2784 | 0.8712 | 0.043* | |
C3 | 1.1430 (2) | −0.1220 (5) | 0.91177 (11) | 0.0320 (5) | |
H3 | 1.0646 | −0.1300 | 0.9113 | 0.038* | |
C4 | 1.1997 (2) | 0.0689 (4) | 0.95542 (11) | 0.0302 (5) | |
C5 | 1.1344 (2) | 0.2195 (5) | 0.99437 (13) | 0.0359 (6) | |
H5 | 1.0562 | 0.2002 | 0.9906 | 0.043* | |
C6 | 1.1833 (2) | 0.3962 (5) | 1.03827 (12) | 0.0356 (5) | |
H6 | 1.1379 | 0.4927 | 1.0638 | 0.043* | |
O1 | 1.01914 (13) | −0.4967 (3) | 0.83570 (8) | 0.0305 (4) | |
O2 | 1.17575 (13) | −0.6158 (3) | 0.79418 (8) | 0.0360 (4) | |
O1W | 0.90126 (17) | −1.0774 (4) | 0.79925 (11) | 0.0429 (5) | |
Cd1 | 1.0000 | −0.79192 (4) | 0.7500 | 0.02670 (9) | |
HW11 | 0.832 (3) | −1.093 (6) | 0.7946 (15) | 0.057 (9)* | |
HW12 | 0.928 (3) | −1.205 (5) | 0.8085 (15) | 0.035 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0313 (12) | 0.0234 (11) | 0.0303 (11) | −0.0003 (9) | −0.0036 (9) | −0.0007 (9) |
C2 | 0.0289 (13) | 0.0363 (13) | 0.0426 (14) | −0.0034 (10) | −0.0014 (11) | −0.0108 (11) |
C3 | 0.0330 (12) | 0.0327 (12) | 0.0299 (12) | −0.0052 (10) | 0.0008 (9) | −0.0040 (10) |
C4 | 0.0365 (13) | 0.0274 (12) | 0.0263 (11) | −0.0041 (10) | 0.0010 (9) | −0.0029 (9) |
C5 | 0.0310 (12) | 0.0379 (14) | 0.0391 (13) | −0.0065 (10) | 0.0043 (10) | −0.0091 (10) |
C6 | 0.0360 (13) | 0.0378 (13) | 0.0333 (12) | −0.0020 (11) | 0.0055 (10) | −0.0115 (10) |
O1 | 0.0277 (8) | 0.0273 (8) | 0.0361 (9) | −0.0020 (7) | −0.0002 (7) | −0.0048 (6) |
O2 | 0.0280 (8) | 0.0336 (9) | 0.0458 (10) | −0.0003 (7) | −0.0008 (7) | −0.0144 (8) |
O1W | 0.0250 (10) | 0.0301 (11) | 0.0739 (13) | 0.0023 (8) | 0.0060 (9) | 0.0139 (9) |
Cd1 | 0.02628 (14) | 0.02161 (13) | 0.03127 (14) | 0.000 | −0.00282 (9) | 0.000 |
Cd1—O1 | 2.3251 (16) | C3—C4 | 1.466 (3) |
Cd1—O2 | 2.3846 (16) | C3—H3 | 0.9300 |
Cd1—O1W | 2.2044 (18) | C4—C6ii | 1.394 (3) |
Cd1—O1Wi | 2.2044 (18) | C4—C5 | 1.399 (3) |
Cd1—O1i | 2.3251 (16) | C5—C6 | 1.381 (3) |
Cd1—O2i | 2.3846 (16) | C5—H5 | 0.9300 |
C1—O2 | 1.262 (3) | C6—C4ii | 1.394 (3) |
C1—O1 | 1.268 (3) | C6—H6 | 0.9300 |
C1—C2 | 1.482 (3) | O1W—HW11 | 0.83 (4) |
C2—C3 | 1.324 (3) | O1W—HW12 | 0.77 (3) |
C2—H2 | 0.9300 | ||
O1Wi—Cd1—O1W | 92.72 (11) | C3—C2—C1 | 122.4 (2) |
O1Wi—Cd1—O1 | 140.88 (7) | C3—C2—H2 | 118.8 |
O1W—Cd1—O1 | 99.10 (7) | C1—C2—H2 | 118.8 |
O1Wi—Cd1—O1i | 99.10 (7) | C2—C3—C4 | 127.2 (2) |
O1W—Cd1—O1i | 140.88 (7) | C2—C3—H3 | 116.4 |
O1—Cd1—O1i | 94.82 (8) | C4—C3—H3 | 116.4 |
O1Wi—Cd1—O2 | 87.52 (7) | C6ii—C4—C5 | 117.9 (2) |
O1W—Cd1—O2 | 125.91 (7) | C6ii—C4—C3 | 123.2 (2) |
O1—Cd1—O2 | 55.50 (5) | C5—C4—C3 | 118.9 (2) |
O1i—Cd1—O2 | 91.93 (6) | C6—C5—C4 | 121.6 (2) |
O1Wi—Cd1—O2i | 125.91 (7) | C6—C5—H5 | 119.2 |
O1W—Cd1—O2i | 87.52 (7) | C4—C5—H5 | 119.2 |
O1—Cd1—O2i | 91.93 (6) | C5—C6—C4ii | 120.5 (2) |
O1i—Cd1—O2i | 55.50 (5) | C5—C6—H6 | 119.7 |
O2—Cd1—O2i | 133.64 (9) | C4ii—C6—H6 | 119.7 |
O2—C1—O1 | 120.3 (2) | C1—O1—Cd1 | 93.27 (13) |
O2—C1—C2 | 118.9 (2) | C1—O2—Cd1 | 90.68 (13) |
O1—C1—C2 | 120.8 (2) | Cd1—O1W—HW11 | 126 (2) |
O2—C1—Cd1 | 61.59 (11) | Cd1—O1W—HW12 | 120 (2) |
O1—C1—Cd1 | 58.90 (11) | HW11—O1W—HW12 | 109 (3) |
C2—C1—Cd1 | 174.99 (17) |
Symmetry codes: (i) −x+2, y, −z+3/2; (ii) −x+5/2, −y+1/2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—HW12···O1iii | 0.77 (3) | 1.95 (3) | 2.703 (3) | 170 (3) |
O1W—HW11···O2iv | 0.83 (4) | 1.85 (4) | 2.675 (3) | 174 (3) |
Symmetry codes: (iii) x, y−1, z; (iv) x−1/2, y−1/2, z. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C12H10O4)(H2O)2] |
Mr | 364.62 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 11.857 (3), 5.3296 (14), 20.030 (5) |
β (°) | 94.983 (4) |
V (Å3) | 1261.0 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.75 |
Crystal size (mm) | 0.31 × 0.21 × 0.19 |
Data collection | |
Diffractometer | Bruker APEX CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.574, 0.716 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3315, 1235, 1199 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.619 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.020, 0.046, 1.11 |
No. of reflections | 1235 |
No. of parameters | 95 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.31, −0.35 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1998).
Cd1—O1 | 2.3251 (16) | Cd1—O1W | 2.2044 (18) |
Cd1—O2 | 2.3846 (16) | ||
O1—Cd1—O2 | 55.50 (5) | O1i—Cd1—O2i | 55.50 (5) |
Symmetry code: (i) −x+2, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—HW12···O1ii | 0.77 (3) | 1.95 (3) | 2.703 (3) | 170 (3) |
O1W—HW11···O2iii | 0.83 (4) | 1.85 (4) | 2.675 (3) | 174 (3) |
Symmetry codes: (ii) x, y−1, z; (iii) x−1/2, y−1/2, z. |
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The supramolecular networks formed by metal 1,4-benzenedicarboxylates (1,4-bdc) have been widely studied (Qi et al., 2003). However, so far, less attention has been given to the participation of p-phenylenediacrylic acid (H2pda) in such networks. The pda dianion, as an important analogue of 1,4-bdc may be a good candidate for the construction of metal–organic helical architectures. We selected pda as a bridging ligand and CdII as a central metal, generating a new zigzag chain coordination polymer, [Cd(pda)(H2O)2], (I), which is reported here.
In compound (I), the CdII atom is six-coordinated by four carboxylate atoms from two different pda ligands, and two water molecules in a very distorted octahedral environment (Fig. 1). The O1, O2, O2i and O1Wi atoms comprise the basal plane, whereas O1W and O1i occupy the axial positions of the octahedron. The Cd—O(carboxylate) distances range from 2.3251 (16) to 2.3846 (16) Å (Table 1).
As shown in Fig. 2, each pda acts as a bis-chelating ligand that binds two CdII atoms, forming a zigzag chain. The chain is decorated with water molecules which participate in O—H···O hydrogen bonds (Table 2) to link the chains together, thus forming a three-dimensional supramolecular structure (Fig. 3).