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The crystal structure of the title compound, C
19H
19NO
3, was determined because it is believed to possess medicinal properties. The piperidine ring assumes a chair conformation. The benzene-ring and methoxycarbonyl substituents are oriented equatorially. Whereas C—H
O intermolecular hydrogen bonds stabilize the crystal packing, the NH group does not form any hydrogen bond.
Supporting information
CCDC reference: 255930
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.045
- wR factor = 0.136
- Data-to-parameter ratio = 15.5
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ?
PLAT420_ALERT_2_C D-H Without Acceptor N1 - H1 ... ?
PLAT707_ALERT_1_C D...A Calc 3.3834(19), Rep 3.386(2), Dev.. 1.37 Sigma
C8 -O2 1.555 3.756
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
3 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: SMART (Siemens, 2000); cell refinement: SAINT (Siemens, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ZORTEP (Zsolnai, 1998) and PLATON (Spek, 1999); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995).
Methyl 4-oxo-r-2,c-6-diphenylpiperidine-3-carboxylate
top
Crystal data top
C19H19NO3 | F(000) = 656 |
Mr = 309.35 | Dx = 1.226 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 9.7563 (13) Å | Cell parameters from 3296 reflections |
b = 7.710 (1) Å | θ = 1.8–26.0° |
c = 22.810 (3) Å | µ = 0.08 mm−1 |
β = 102.348 (4)° | T = 293 K |
V = 1676.1 (4) Å3 | Block, pale yellow |
Z = 4 | 0.41 × 0.20 × 0.12 mm |
Data collection top
Siemens SMART CCD area-detector diffractometer | 2595 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.077 |
Graphite monochromator | θmax = 26.0°, θmin = 1.8° |
ω scans | h = −12→12 |
12559 measured reflections | k = −8→9 |
3296 independent reflections | l = −28→28 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.045 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.136 | w = 1/[σ2(Fo2) + (0.0673P)2 + 0.137P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
3296 reflections | Δρmax = 0.17 e Å−3 |
213 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.015 (2) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.71975 (11) | 0.18726 (15) | 0.55272 (4) | 0.0517 (3) | |
H1 | 0.6560 (16) | 0.116 (2) | 0.5644 (6) | 0.066 (4)* | |
C6 | 0.71963 (13) | 0.15034 (17) | 0.48980 (5) | 0.0514 (3) | |
H6 | 0.7517 | 0.0312 | 0.4861 | 0.062* | |
C7 | 0.57575 (13) | 0.17356 (16) | 0.45010 (5) | 0.0508 (3) | |
C8 | 0.54901 (15) | 0.1069 (2) | 0.39227 (6) | 0.0631 (4) | |
H8 | 0.6176 | 0.0419 | 0.3796 | 0.076* | |
C9 | 0.42225 (17) | 0.1355 (2) | 0.35339 (7) | 0.0731 (4) | |
H9 | 0.4063 | 0.0907 | 0.3147 | 0.088* | |
C10 | 0.31945 (16) | 0.2298 (2) | 0.37138 (8) | 0.0742 (5) | |
H10 | 0.2341 | 0.2497 | 0.3450 | 0.089* | |
C11 | 0.34365 (17) | 0.2944 (2) | 0.42868 (8) | 0.0751 (5) | |
H11 | 0.2738 | 0.3571 | 0.4413 | 0.090* | |
C12 | 0.47070 (15) | 0.26719 (19) | 0.46768 (7) | 0.0624 (4) | |
H12 | 0.4859 | 0.3124 | 0.5063 | 0.075* | |
C2 | 0.85514 (13) | 0.15684 (17) | 0.59352 (5) | 0.0503 (3) | |
H2 | 0.8849 | 0.0371 | 0.5889 | 0.060* | |
C13 | 0.84070 (14) | 0.18508 (17) | 0.65771 (5) | 0.0538 (3) | |
C14 | 0.75181 (17) | 0.3099 (2) | 0.67176 (6) | 0.0655 (4) | |
H14 | 0.6995 | 0.3779 | 0.6414 | 0.079* | |
C15 | 0.7394 (2) | 0.3353 (3) | 0.73052 (7) | 0.0860 (5) | |
H15 | 0.6786 | 0.4194 | 0.7394 | 0.103* | |
C16 | 0.8168 (2) | 0.2360 (3) | 0.77546 (7) | 0.0920 (6) | |
H16 | 0.8082 | 0.2520 | 0.8149 | 0.110* | |
C17 | 0.9063 (2) | 0.1141 (3) | 0.76232 (7) | 0.0894 (6) | |
H17 | 0.9595 | 0.0479 | 0.7930 | 0.107* | |
C3 | 0.96430 (13) | 0.28280 (18) | 0.57697 (5) | 0.0520 (3) | |
H3 | 0.9393 | 0.4011 | 0.5865 | 0.062* | |
C18 | 0.91886 (16) | 0.0875 (2) | 0.70368 (6) | 0.0703 (4) | |
H18 | 0.9803 | 0.0036 | 0.6952 | 0.084* | |
C4 | 0.96309 (15) | 0.2740 (2) | 0.51030 (6) | 0.0614 (4) | |
C5 | 0.82156 (15) | 0.2770 (2) | 0.46995 (6) | 0.0637 (4) | |
H5A | 0.8302 | 0.2478 | 0.4295 | 0.076* | |
H5B | 0.7836 | 0.3935 | 0.4691 | 0.076* | |
C19 | 1.11106 (15) | 0.24618 (19) | 0.61132 (6) | 0.0588 (4) | |
C20 | 1.33186 (19) | 0.3722 (3) | 0.65082 (11) | 0.1084 (7) | |
H20A | 1.3747 | 0.4845 | 0.6578 | 0.163* | |
H20B | 1.3772 | 0.3071 | 0.6245 | 0.163* | |
H20C | 1.3415 | 0.3118 | 0.6883 | 0.163* | |
O1 | 1.07038 (12) | 0.2678 (2) | 0.49241 (5) | 0.0937 (4) | |
O2 | 1.15769 (11) | 0.10441 (15) | 0.62429 (5) | 0.0829 (4) | |
O3 | 1.18499 (10) | 0.39191 (14) | 0.62358 (5) | 0.0740 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0527 (6) | 0.0596 (7) | 0.0465 (6) | −0.0002 (5) | 0.0187 (5) | 0.0034 (5) |
C6 | 0.0565 (7) | 0.0528 (7) | 0.0480 (6) | 0.0037 (5) | 0.0184 (5) | −0.0011 (5) |
C7 | 0.0557 (7) | 0.0470 (7) | 0.0525 (7) | −0.0007 (5) | 0.0180 (6) | 0.0043 (5) |
C8 | 0.0640 (8) | 0.0674 (9) | 0.0588 (8) | 0.0033 (7) | 0.0153 (6) | −0.0054 (6) |
C9 | 0.0754 (10) | 0.0768 (10) | 0.0625 (8) | −0.0046 (8) | 0.0042 (7) | −0.0013 (7) |
C10 | 0.0619 (9) | 0.0711 (10) | 0.0836 (11) | 0.0003 (7) | 0.0020 (8) | 0.0150 (8) |
C11 | 0.0636 (9) | 0.0729 (10) | 0.0919 (11) | 0.0162 (8) | 0.0239 (8) | 0.0104 (8) |
C12 | 0.0652 (8) | 0.0632 (9) | 0.0622 (8) | 0.0094 (6) | 0.0212 (7) | 0.0021 (6) |
C2 | 0.0553 (7) | 0.0482 (7) | 0.0500 (7) | 0.0036 (5) | 0.0173 (5) | 0.0029 (5) |
C13 | 0.0602 (8) | 0.0546 (7) | 0.0485 (7) | −0.0057 (6) | 0.0159 (6) | 0.0045 (5) |
C14 | 0.0817 (10) | 0.0648 (9) | 0.0542 (7) | 0.0023 (7) | 0.0237 (7) | 0.0009 (6) |
C15 | 0.1118 (14) | 0.0887 (12) | 0.0674 (10) | −0.0075 (10) | 0.0415 (10) | −0.0153 (8) |
C16 | 0.1178 (15) | 0.1143 (16) | 0.0483 (8) | −0.0308 (13) | 0.0277 (9) | −0.0045 (9) |
C17 | 0.1004 (13) | 0.1101 (15) | 0.0528 (8) | −0.0153 (11) | 0.0056 (8) | 0.0214 (9) |
C3 | 0.0528 (7) | 0.0534 (7) | 0.0527 (7) | 0.0021 (5) | 0.0180 (5) | 0.0003 (5) |
C18 | 0.0706 (9) | 0.0777 (10) | 0.0611 (8) | −0.0015 (8) | 0.0106 (7) | 0.0151 (7) |
C4 | 0.0603 (8) | 0.0726 (9) | 0.0571 (8) | −0.0082 (7) | 0.0256 (6) | −0.0020 (6) |
C5 | 0.0639 (8) | 0.0850 (10) | 0.0463 (7) | −0.0085 (7) | 0.0208 (6) | 0.0041 (6) |
C19 | 0.0569 (8) | 0.0641 (9) | 0.0587 (8) | 0.0049 (6) | 0.0196 (6) | −0.0007 (6) |
C20 | 0.0664 (11) | 0.1096 (16) | 0.1336 (17) | −0.0018 (10) | −0.0131 (10) | −0.0165 (13) |
O1 | 0.0642 (7) | 0.1559 (13) | 0.0700 (7) | −0.0146 (7) | 0.0345 (6) | −0.0128 (7) |
O2 | 0.0625 (6) | 0.0715 (7) | 0.1151 (9) | 0.0134 (5) | 0.0199 (6) | 0.0120 (6) |
O3 | 0.0621 (6) | 0.0721 (7) | 0.0814 (7) | −0.0019 (5) | 0.0012 (5) | −0.0092 (5) |
Geometric parameters (Å, º) top
N1—C6 | 1.4628 (15) | C14—C15 | 1.385 (2) |
N1—C2 | 1.4631 (17) | C14—H14 | 0.9300 |
N1—H1 | 0.914 (16) | C15—C16 | 1.370 (3) |
C6—C7 | 1.5096 (18) | C15—H15 | 0.9300 |
C6—C5 | 1.5300 (19) | C16—C17 | 1.359 (3) |
C6—H6 | 0.9800 | C16—H16 | 0.9300 |
C7—C12 | 1.3813 (19) | C17—C18 | 1.384 (2) |
C7—C8 | 1.3877 (18) | C17—H17 | 0.9300 |
C8—C9 | 1.377 (2) | C3—C19 | 1.5047 (19) |
C8—H8 | 0.9300 | C3—C4 | 1.5199 (18) |
C9—C10 | 1.371 (2) | C3—H3 | 0.9800 |
C9—H9 | 0.9300 | C18—H18 | 0.9300 |
C10—C11 | 1.371 (2) | C4—O1 | 1.2030 (17) |
C10—H10 | 0.9300 | C4—C5 | 1.487 (2) |
C11—C12 | 1.379 (2) | C5—H5A | 0.9700 |
C11—H11 | 0.9300 | C5—H5B | 0.9700 |
C12—H12 | 0.9300 | C19—O2 | 1.1965 (17) |
C2—C13 | 1.5163 (17) | C19—O3 | 1.3321 (17) |
C2—C3 | 1.5466 (18) | C20—O3 | 1.443 (2) |
C2—H2 | 0.9800 | C20—H20A | 0.9600 |
C13—C14 | 1.378 (2) | C20—H20B | 0.9600 |
C13—C18 | 1.3801 (19) | C20—H20C | 0.9600 |
| | | |
C6—N1—C2 | 113.84 (10) | C15—C14—H14 | 119.6 |
C6—N1—H1 | 108.1 (9) | C16—C15—C14 | 119.79 (18) |
C2—N1—H1 | 107.2 (9) | C16—C15—H15 | 120.1 |
N1—C6—C7 | 111.78 (10) | C14—C15—H15 | 120.1 |
N1—C6—C5 | 107.57 (11) | C17—C16—C15 | 119.92 (16) |
C7—C6—C5 | 109.06 (10) | C17—C16—H16 | 120.0 |
N1—C6—H6 | 109.5 | C15—C16—H16 | 120.0 |
C7—C6—H6 | 109.5 | C16—C17—C18 | 120.62 (16) |
C5—C6—H6 | 109.5 | C16—C17—H17 | 119.7 |
C12—C7—C8 | 117.98 (13) | C18—C17—H17 | 119.7 |
C12—C7—C6 | 122.71 (11) | C19—C3—C4 | 108.41 (11) |
C8—C7—C6 | 119.21 (12) | C19—C3—C2 | 112.54 (10) |
C9—C8—C7 | 120.88 (14) | C4—C3—C2 | 110.98 (11) |
C9—C8—H8 | 119.6 | C19—C3—H3 | 108.3 |
C7—C8—H8 | 119.6 | C4—C3—H3 | 108.3 |
C10—C9—C8 | 120.42 (15) | C2—C3—H3 | 108.3 |
C10—C9—H9 | 119.8 | C13—C18—C17 | 120.31 (17) |
C8—C9—H9 | 119.8 | C13—C18—H18 | 119.8 |
C9—C10—C11 | 119.35 (14) | C17—C18—H18 | 119.8 |
C9—C10—H10 | 120.3 | O1—C4—C5 | 123.43 (12) |
C11—C10—H10 | 120.3 | O1—C4—C3 | 121.33 (13) |
C10—C11—C12 | 120.50 (15) | C5—C4—C3 | 115.23 (12) |
C10—C11—H11 | 119.8 | C4—C5—C6 | 112.54 (11) |
C12—C11—H11 | 119.8 | C4—C5—H5A | 109.1 |
C11—C12—C7 | 120.86 (14) | C6—C5—H5A | 109.1 |
C11—C12—H12 | 119.6 | C4—C5—H5B | 109.1 |
C7—C12—H12 | 119.6 | C6—C5—H5B | 109.1 |
N1—C2—C13 | 109.49 (10) | H5A—C5—H5B | 107.8 |
N1—C2—C3 | 108.61 (10) | O2—C19—O3 | 123.95 (14) |
C13—C2—C3 | 110.89 (10) | O2—C19—C3 | 124.70 (13) |
N1—C2—H2 | 109.3 | O3—C19—C3 | 111.30 (11) |
C13—C2—H2 | 109.3 | O3—C20—H20A | 109.5 |
C3—C2—H2 | 109.3 | O3—C20—H20B | 109.5 |
C14—C13—C18 | 118.47 (13) | H20A—C20—H20B | 109.5 |
C14—C13—C2 | 121.19 (11) | O3—C20—H20C | 109.5 |
C18—C13—C2 | 120.33 (13) | H20A—C20—H20C | 109.5 |
C13—C14—C15 | 120.89 (15) | H20B—C20—H20C | 109.5 |
C13—C14—H14 | 119.6 | C19—O3—C20 | 116.41 (13) |
| | | |
C2—N1—C6—C7 | 176.64 (10) | C14—C15—C16—C17 | 0.5 (3) |
C2—N1—C6—C5 | −63.66 (14) | C15—C16—C17—C18 | −0.8 (3) |
N1—C6—C7—C12 | 18.28 (17) | N1—C2—C3—C19 | −172.71 (10) |
C5—C6—C7—C12 | −100.54 (14) | C13—C2—C3—C19 | 66.93 (14) |
N1—C6—C7—C8 | −165.37 (12) | N1—C2—C3—C4 | −51.02 (14) |
C5—C6—C7—C8 | 75.81 (15) | C13—C2—C3—C4 | −171.38 (11) |
C12—C7—C8—C9 | 0.9 (2) | C14—C13—C18—C17 | 0.7 (2) |
C6—C7—C8—C9 | −175.57 (13) | C2—C13—C18—C17 | 179.61 (14) |
C7—C8—C9—C10 | −0.5 (2) | C16—C17—C18—C13 | 0.1 (3) |
C8—C9—C10—C11 | −0.4 (2) | C19—C3—C4—O1 | −11.1 (2) |
C9—C10—C11—C12 | 0.9 (2) | C2—C3—C4—O1 | −135.20 (16) |
C10—C11—C12—C7 | −0.4 (2) | C19—C3—C4—C5 | 169.90 (12) |
C8—C7—C12—C11 | −0.5 (2) | C2—C3—C4—C5 | 45.82 (16) |
C6—C7—C12—C11 | 175.90 (13) | O1—C4—C5—C6 | 133.58 (17) |
C6—N1—C2—C13 | −175.53 (10) | C3—C4—C5—C6 | −47.47 (17) |
C6—N1—C2—C3 | 63.25 (14) | N1—C6—C5—C4 | 53.33 (15) |
N1—C2—C13—C14 | −34.55 (17) | C7—C6—C5—C4 | 174.75 (11) |
C3—C2—C13—C14 | 85.28 (15) | C4—C3—C19—O2 | −86.19 (17) |
N1—C2—C13—C18 | 146.60 (13) | C2—C3—C19—O2 | 36.94 (19) |
C3—C2—C13—C18 | −93.57 (15) | C4—C3—C19—O3 | 91.35 (13) |
C18—C13—C14—C15 | −1.0 (2) | C2—C3—C19—O3 | −145.52 (11) |
C2—C13—C14—C15 | −179.85 (14) | O2—C19—O3—C20 | 3.9 (2) |
C13—C14—C15—C16 | 0.4 (3) | C3—C19—O3—C20 | −173.64 (14) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8···O2i | 0.93 | 2.49 | 3.386 (2) | 163 |
Symmetry code: (i) −x+2, −y, −z+1. |
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