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In the title compound, C19H18ClN3O2Se, the heterocyclic ring makes dihedral angles of 40.74 (12) and 51.76 (11)° with the chloro­phenyl and methyl­phenyl rings, respectively. The mol­ecular structure is stabilized by weak intra­molecular C—H...Se and C—H...O inter­actions, and the crystal packing is stabilized by weak inter­molecular C—H...O inter­actions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807043553/bt2479sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536807043553/bt2479Isup2.hkl
Contains datablock I

CCDC reference: 663740

Key indicators

  • Single-crystal X-ray study
  • T = 290 K
  • Mean [sigma](C-C) = 0.005 Å
  • R factor = 0.044
  • wR factor = 0.102
  • Data-to-parameter ratio = 16.4

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.96 PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.35 PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.60 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.21 Ratio PLAT322_ALERT_2_C Check Hybridisation of Se1 in Main Residue . ?
Alert level G PLAT793_ALERT_1_G Check the Absolute Configuration of C3 = ... S
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 5 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Comment top

Selenium containing compounds like 1,2,3-selenadiazole possess various beneficial activities like antifungal (Kuroda et al., 2001), antibacterial (El-Kashef et al., 1986), antimicrobial (El-Bahaie et al., 1990) and insecticidal (Padmavathi et al., 2002) activities. As naturally occurring nitro compounds exhibit broad antibiotic activity and certain alkyl nitro compounds exhibit antitumor activity, it was decided to synthesize and structurally characterize a set of 1,2,3-selenadiazoles with nitro group in the side chain (Saravanan et al., 2006).

The geometric parameters in the compound agree with the reported values of similar structures (Mellini & Merlino, 1976a; Mellini & Merlino, 1976b; Bertini et al., 1984). The Chlorophenyl ring makes a dihedral angle of 40.74 (12) ° with the heterocyclic ring. The methylphenyl ring makes a dihedral angle of 51.76 (11) ° with the heterocyclic ring (Fig 1.).

The molecular structure is stabilized by weak intramolecular C—H···Se and C—H···O interactions and the crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···O interactions.

Related literature top

For related literature, see: Mellini & Merlino (1976a,b); Bertini et al. (1984); El-Bahaie et al. (1990); El-Kashef et al. (1986); Kuroda et al. (2001); Padmavathi et al. (2002); Saravanan et al. (2006).

Experimental top

A solution of 0.005 mole of 2-[(E)-1-(4-chlorophenyl)-4-methyl-3-(4- methylphenyl)-4-nitropentylidene]-1-hydrazinecarboxamide and 0.05 mole of powdered selenium dioxide in dry THF was gently heated on a water bath for two hours. The selenium deposited on cooling was removed by filtration, and the filtrate was poured into crushed ice, extracted with chloroform, and purified by column chromatography using silica gel (60–120 mesh) with 97:3 petroleum ether: ethyl acetate as eluent to give the title compound, which were recrystallized from ethyl alcohol.

Refinement top

H atoms were positioned geometrically and refined using riding model with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic C—H, C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for CH3 and C—H = 0.98° A and Uiso(H) = 1.2Ueq(C) for tertiary CH.

Structure description top

Selenium containing compounds like 1,2,3-selenadiazole possess various beneficial activities like antifungal (Kuroda et al., 2001), antibacterial (El-Kashef et al., 1986), antimicrobial (El-Bahaie et al., 1990) and insecticidal (Padmavathi et al., 2002) activities. As naturally occurring nitro compounds exhibit broad antibiotic activity and certain alkyl nitro compounds exhibit antitumor activity, it was decided to synthesize and structurally characterize a set of 1,2,3-selenadiazoles with nitro group in the side chain (Saravanan et al., 2006).

The geometric parameters in the compound agree with the reported values of similar structures (Mellini & Merlino, 1976a; Mellini & Merlino, 1976b; Bertini et al., 1984). The Chlorophenyl ring makes a dihedral angle of 40.74 (12) ° with the heterocyclic ring. The methylphenyl ring makes a dihedral angle of 51.76 (11) ° with the heterocyclic ring (Fig 1.).

The molecular structure is stabilized by weak intramolecular C—H···Se and C—H···O interactions and the crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···O interactions.

For related literature, see: Mellini & Merlino (1976a,b); Bertini et al. (1984); El-Bahaie et al. (1990); El-Kashef et al. (1986); Kuroda et al. (2001); Padmavathi et al. (2002); Saravanan et al. (2006).

Computing details top

Data collection: SMART (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: PLATON (Spek, 2003).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title compound, with atom labels and 50% probability displacement ellipsoids for non-H atoms.
[Figure 2] Fig. 2. The packing of the title compound, viewed down the a axis. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted.
4-(4-Chlorophenyl)-5-[2-methyl-1-(4-methylphenyl)-2-nitropropyl]-1,2,3- selenadiazole top
Crystal data top
C19H18ClN3O2SeF(000) = 880
Mr = 434.77Dx = 1.516 Mg m3
Monoclinic, P21/nMelting point: 134 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 13.346 (3) Åθ = 2.5–26.5°
b = 9.636 (2) ŵ = 2.13 mm1
c = 14.887 (3) ÅT = 290 K
β = 95.668 (4)°Rectangular, colourless
V = 1905.1 (7) Å30.35 × 0.25 × 0.22 mm
Z = 4
Data collection top
Bruker SMART APEX CCD
diffractometer
3884 independent reflections
Radiation source: fine-focus seald tube2618 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
ω scanθmax = 26.4°, θmin = 2.0°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1616
Tmin = 0.527, Tmax = 0.651k = 1211
14877 measured reflectionsl = 1718
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.0451P)2 + 0.4482P]
where P = (Fo2 + 2Fc2)/3
3884 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = 0.23 e Å3
Crystal data top
C19H18ClN3O2SeV = 1905.1 (7) Å3
Mr = 434.77Z = 4
Monoclinic, P21/nMo Kα radiation
a = 13.346 (3) ŵ = 2.13 mm1
b = 9.636 (2) ÅT = 290 K
c = 14.887 (3) Å0.35 × 0.25 × 0.22 mm
β = 95.668 (4)°
Data collection top
Bruker SMART APEX CCD
diffractometer
3884 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
2618 reflections with I > 2σ(I)
Tmin = 0.527, Tmax = 0.651Rint = 0.048
14877 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0440 restraints
wR(F2) = 0.102H-atom parameters constrained
S = 1.01Δρmax = 0.54 e Å3
3884 reflectionsΔρmin = 0.23 e Å3
237 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Se10.28743 (3)0.19923 (4)0.15518 (2)0.05775 (16)
C30.4001 (2)0.2992 (3)0.32749 (19)0.0354 (7)
H30.45520.36490.34270.042*
Cl10.73325 (7)0.83606 (10)0.26746 (7)0.0688 (3)
C20.3746 (2)0.3123 (3)0.2263 (2)0.0391 (7)
N30.4788 (2)0.1728 (3)0.45710 (19)0.0487 (7)
N10.3193 (2)0.3034 (4)0.05636 (18)0.0636 (9)
C70.3166 (2)0.3435 (3)0.38403 (19)0.0345 (7)
O10.4309 (2)0.1161 (3)0.51175 (16)0.0681 (8)
C170.6391 (2)0.7137 (3)0.2389 (2)0.0451 (8)
C80.3411 (2)0.4283 (3)0.4583 (2)0.0431 (8)
H80.40560.46550.46790.052*
C120.2184 (2)0.2959 (4)0.3705 (2)0.0469 (8)
H120.19860.24290.31970.056*
C140.4913 (2)0.5163 (3)0.1966 (2)0.0377 (7)
C10.4149 (2)0.4079 (3)0.17203 (19)0.0406 (8)
C150.5673 (2)0.5389 (3)0.1404 (2)0.0439 (8)
H150.56840.48670.08800.053*
C180.5641 (3)0.6962 (3)0.2950 (2)0.0463 (8)
H180.56320.74950.34710.056*
N20.3820 (2)0.3981 (3)0.08075 (18)0.0549 (8)
C90.2712 (3)0.4583 (4)0.5183 (2)0.0519 (9)
H90.28970.51550.56750.062*
C160.6408 (2)0.6376 (4)0.1614 (2)0.0480 (8)
H160.69100.65240.12330.058*
O20.5502 (2)0.2477 (3)0.4770 (2)0.0834 (9)
C190.4901 (2)0.5986 (3)0.2731 (2)0.0431 (8)
H190.43850.58760.31010.052*
C40.4443 (2)0.1525 (3)0.3560 (2)0.0400 (8)
C100.1748 (3)0.4054 (4)0.5069 (2)0.0542 (9)
C50.3720 (3)0.0321 (3)0.3480 (2)0.0589 (10)
H5A0.35160.01420.28540.088*
H5B0.31400.05410.37850.088*
H5C0.40450.04880.37500.088*
C60.5383 (3)0.1222 (5)0.3094 (3)0.0729 (12)
H6A0.57180.04220.33650.109*
H6B0.58270.20070.31570.109*
H6C0.51960.10460.24650.109*
C110.1494 (3)0.3253 (4)0.4309 (3)0.0581 (10)
H110.08430.29060.42030.070*
C130.1020 (3)0.4306 (5)0.5764 (3)0.0898 (15)
H13A0.12860.39140.63310.135*
H13B0.03860.38780.55710.135*
H13C0.09250.52860.58340.135*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Se10.0682 (3)0.0690 (3)0.0356 (2)0.0224 (2)0.00294 (16)0.00654 (18)
C30.0380 (17)0.0384 (17)0.0303 (16)0.0051 (14)0.0064 (13)0.0013 (14)
Cl10.0588 (6)0.0648 (7)0.0821 (7)0.0143 (5)0.0038 (5)0.0075 (5)
C20.0413 (17)0.0449 (19)0.0322 (17)0.0011 (15)0.0095 (13)0.0007 (14)
N30.064 (2)0.0423 (18)0.0390 (17)0.0131 (15)0.0004 (15)0.0019 (13)
N10.076 (2)0.084 (2)0.0303 (16)0.0160 (19)0.0026 (15)0.0032 (16)
C70.0420 (18)0.0334 (17)0.0283 (16)0.0032 (13)0.0040 (13)0.0000 (12)
O10.106 (2)0.0651 (18)0.0368 (14)0.0214 (16)0.0236 (14)0.0095 (13)
C170.0432 (19)0.045 (2)0.046 (2)0.0017 (15)0.0030 (16)0.0058 (16)
C80.0483 (19)0.045 (2)0.0351 (18)0.0027 (16)0.0013 (15)0.0020 (15)
C120.049 (2)0.054 (2)0.0390 (18)0.0033 (17)0.0091 (16)0.0097 (16)
C140.0444 (18)0.0392 (18)0.0300 (17)0.0035 (14)0.0057 (14)0.0055 (14)
C10.0456 (18)0.051 (2)0.0261 (17)0.0020 (16)0.0077 (14)0.0015 (14)
C150.0494 (19)0.052 (2)0.0313 (18)0.0017 (16)0.0100 (15)0.0002 (15)
C180.060 (2)0.043 (2)0.0371 (18)0.0053 (17)0.0086 (16)0.0015 (15)
N20.0635 (19)0.070 (2)0.0320 (16)0.0083 (17)0.0073 (14)0.0013 (14)
C90.067 (2)0.058 (2)0.0300 (18)0.0177 (19)0.0003 (17)0.0061 (16)
C160.047 (2)0.059 (2)0.041 (2)0.0017 (17)0.0147 (16)0.0068 (17)
O20.081 (2)0.077 (2)0.084 (2)0.0086 (17)0.0328 (17)0.0016 (17)
C190.050 (2)0.044 (2)0.0379 (19)0.0038 (16)0.0158 (15)0.0049 (15)
C40.0491 (19)0.0430 (19)0.0292 (17)0.0025 (15)0.0104 (14)0.0019 (13)
C100.058 (2)0.069 (3)0.037 (2)0.019 (2)0.0139 (17)0.0045 (18)
C50.078 (3)0.042 (2)0.055 (2)0.0044 (19)0.000 (2)0.0013 (17)
C60.075 (3)0.080 (3)0.070 (3)0.029 (2)0.037 (2)0.011 (2)
C110.044 (2)0.074 (3)0.058 (2)0.0010 (18)0.0143 (18)0.004 (2)
C130.082 (3)0.139 (4)0.053 (3)0.039 (3)0.030 (2)0.001 (3)
Geometric parameters (Å, º) top
Se1—C21.849 (3)C1—N21.389 (4)
Se1—N11.865 (3)C15—C161.381 (4)
C3—C21.517 (4)C15—H150.9300
C3—C71.522 (4)C18—C191.379 (4)
C3—C41.573 (4)C18—H180.9300
C3—H30.9800C9—C101.378 (5)
Cl1—C171.745 (3)C9—H90.9300
C2—C11.370 (4)C16—H160.9300
N3—O21.209 (4)C19—H190.9300
N3—O11.213 (4)C4—C51.507 (4)
N3—C41.543 (4)C4—C61.520 (4)
N1—N21.266 (4)C10—C111.383 (5)
C7—C121.384 (4)C10—C131.508 (5)
C7—C81.387 (4)C5—H5A0.9600
C17—C161.369 (5)C5—H5B0.9600
C17—C181.376 (4)C5—H5C0.9600
C8—C91.386 (4)C6—H6A0.9600
C8—H80.9300C6—H6B0.9600
C12—C111.379 (4)C6—H6C0.9600
C12—H120.9300C11—H110.9300
C14—C191.388 (4)C13—H13A0.9600
C14—C151.393 (4)C13—H13B0.9600
C14—C11.481 (4)C13—H13C0.9600
C2—Se1—N187.39 (13)C10—C9—C8121.5 (3)
C2—C3—C7114.9 (2)C10—C9—H9119.2
C2—C3—C4112.6 (2)C8—C9—H9119.2
C7—C3—C4112.3 (2)C17—C16—C15119.3 (3)
C2—C3—H3105.4C17—C16—H16120.4
C7—C3—H3105.4C15—C16—H16120.4
C4—C3—H3105.4C18—C19—C14121.2 (3)
C1—C2—C3125.4 (3)C18—C19—H19119.4
C1—C2—Se1108.7 (2)C14—C19—H19119.4
C3—C2—Se1125.9 (2)C5—C4—C6111.5 (3)
O2—N3—O1124.0 (3)C5—C4—N3107.5 (3)
O2—N3—C4117.8 (3)C6—C4—N3106.8 (3)
O1—N3—C4118.1 (3)C5—C4—C3116.7 (3)
N2—N1—Se1110.9 (2)C6—C4—C3110.8 (3)
C12—C7—C8117.2 (3)N3—C4—C3102.5 (2)
C12—C7—C3124.1 (3)C9—C10—C11117.3 (3)
C8—C7—C3118.5 (3)C9—C10—C13120.8 (4)
C16—C17—C18121.3 (3)C11—C10—C13121.9 (4)
C16—C17—Cl1119.7 (3)C4—C5—H5A109.5
C18—C17—Cl1119.0 (3)C4—C5—H5B109.5
C9—C8—C7121.1 (3)H5A—C5—H5B109.5
C9—C8—H8119.5C4—C5—H5C109.5
C7—C8—H8119.5H5A—C5—H5C109.5
C11—C12—C7121.4 (3)H5B—C5—H5C109.5
C11—C12—H12119.3C4—C6—H6A109.5
C7—C12—H12119.3C4—C6—H6B109.5
C19—C14—C15118.1 (3)H6A—C6—H6B109.5
C19—C14—C1122.8 (3)C4—C6—H6C109.5
C15—C14—C1119.1 (3)H6A—C6—H6C109.5
C2—C1—N2115.2 (3)H6B—C6—H6C109.5
C2—C1—C14129.1 (3)C12—C11—C10121.5 (3)
N2—C1—C14115.7 (3)C12—C11—H11119.3
C16—C15—C14121.0 (3)C10—C11—H11119.3
C16—C15—H15119.5C10—C13—H13A109.5
C14—C15—H15119.5C10—C13—H13B109.5
C17—C18—C19119.1 (3)H13A—C13—H13B109.5
C17—C18—H18120.5C10—C13—H13C109.5
C19—C18—H18120.5H13A—C13—H13C109.5
N1—N2—C1117.8 (3)H13B—C13—H13C109.5
C7—C3—C2—C1109.3 (3)Se1—N1—N2—C10.1 (4)
C4—C3—C2—C1120.5 (3)C2—C1—N2—N10.2 (5)
C7—C3—C2—Se172.7 (3)C14—C1—N2—N1177.5 (3)
C4—C3—C2—Se157.5 (3)C7—C8—C9—C100.0 (5)
N1—Se1—C2—C10.1 (2)C18—C17—C16—C151.7 (5)
N1—Se1—C2—C3178.4 (3)Cl1—C17—C16—C15178.6 (2)
C2—Se1—N1—N20.0 (3)C14—C15—C16—C170.4 (5)
C2—C3—C7—C1251.4 (4)C17—C18—C19—C141.2 (5)
C4—C3—C7—C1279.0 (4)C15—C14—C19—C182.5 (5)
C2—C3—C7—C8134.0 (3)C1—C14—C19—C18178.3 (3)
C4—C3—C7—C895.7 (3)O2—N3—C4—C5167.1 (3)
C12—C7—C8—C92.9 (5)O1—N3—C4—C515.1 (4)
C3—C7—C8—C9172.2 (3)O2—N3—C4—C647.3 (4)
C8—C7—C12—C113.3 (5)O1—N3—C4—C6134.9 (3)
C3—C7—C12—C11171.4 (3)O2—N3—C4—C369.2 (3)
C3—C2—C1—N2178.5 (3)O1—N3—C4—C3108.5 (3)
Se1—C2—C1—N20.2 (3)C2—C3—C4—C571.2 (3)
C3—C2—C1—C141.1 (5)C7—C3—C4—C560.3 (3)
Se1—C2—C1—C14177.2 (3)C2—C3—C4—C657.9 (4)
C19—C14—C1—C242.9 (5)C7—C3—C4—C6170.6 (3)
C15—C14—C1—C2138.0 (3)C2—C3—C4—N3171.6 (2)
C19—C14—C1—N2139.7 (3)C7—C3—C4—N356.9 (3)
C15—C14—C1—N239.4 (4)C8—C9—C10—C112.5 (5)
C19—C14—C15—C161.7 (5)C8—C9—C10—C13175.5 (3)
C1—C14—C15—C16179.1 (3)C7—C12—C11—C100.9 (6)
C16—C17—C18—C190.9 (5)C9—C10—C11—C122.0 (5)
Cl1—C17—C18—C19179.4 (2)C13—C10—C11—C12175.9 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C3—H3···O20.982.532.887 (4)102
C5—H5A···Se10.962.713.387 (4)128
C12—H12···Se10.932.853.546 (3)132
C18—H18···O1i0.932.463.393 (4)177
Symmetry code: (i) x+1, y+1, z+1.

Experimental details

Crystal data
Chemical formulaC19H18ClN3O2Se
Mr434.77
Crystal system, space groupMonoclinic, P21/n
Temperature (K)290
a, b, c (Å)13.346 (3), 9.636 (2), 14.887 (3)
β (°) 95.668 (4)
V3)1905.1 (7)
Z4
Radiation typeMo Kα
µ (mm1)2.13
Crystal size (mm)0.35 × 0.25 × 0.22
Data collection
DiffractometerBruker SMART APEX CCD
Absorption correctionMulti-scan
(SADABS; Sheldrick, 1996)
Tmin, Tmax0.527, 0.651
No. of measured, independent and
observed [I > 2σ(I)] reflections
14877, 3884, 2618
Rint0.048
(sin θ/λ)max1)0.625
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.044, 0.102, 1.01
No. of reflections3884
No. of parameters237
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.54, 0.23

Computer programs: SMART (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C3—H3···O20.982.532.887 (4)101.6
C5—H5A···Se10.962.713.387 (4)128.0
C12—H12···Se10.932.853.546 (3)132.1
C18—H18···O1i0.932.463.393 (4)177
Symmetry code: (i) x+1, y+1, z+1.
 

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