Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807038007/bt2463sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807038007/bt2463Isup2.hkl |
CCDC reference: 660083
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.007 Å
- R factor = 0.039
- wR factor = 0.121
- Data-to-parameter ratio = 14.8
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.64 Ratio PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for S1 PLAT333_ALERT_2_B Large Average Benzene C-C Dist. C4 -C12 1.47 Ang. PLAT432_ALERT_2_B Short Inter X...Y Contact O4 .. C5 .. 2.78 Ang. PLAT432_ALERT_2_B Short Inter X...Y Contact O4 .. C6 .. 2.78 Ang. PLAT432_ALERT_2_B Short Inter X...Y Contact O5 .. C5 .. 2.89 Ang.
Alert level C ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90 Tmin and Tmax reported: 0.654 1.000 Tmin(prime) and Tmax expected: 0.637 0.814 RR(prime) = 0.835 Please check that your absorption correction is appropriate. PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.82 PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.81 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.34 Ratio PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 7 PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C5 - C6 ... 1.55 Ang.
Alert level G ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.814 Tmax scaled 0.814 Tmin scaled 0.532 PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT794_ALERT_5_G Check Predicted Bond Valency for Cu1 (2) 1.96
0 ALERT level A = In general: serious problem 6 ALERT level B = Potentially serious problem 8 ALERT level C = Check and explain 4 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 7 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
For related literature, see: Addison & Rao (1984); Coyle et al. (2003); Deegan et al. (2006); Eshwika et al. (2004); Ghosh et al. (2006); Xu et al. (2006); Yamada et al. (1992).
1,10-Phenanthroline-5,6-dione was prepared according to the literature method (Yamada et al., 1992). The complex was prepared by mixing a 10 ml me thanolic solution of copper(II) chloride dihydrate (171 mg, 0.5 mmol) and 1,10-phenanthroline-5,6-dione (105 mg, 0.5 mmol) in methanolic solution (10 ml) was added, and then the solution was stirred for about 3 h at room temperature. The green precipitate was collected by filtration. Crystals of suitable quality for X-ray analysis were obtained by slow evaporation of a dimethyl sulfoxide solution.
All H atoms were initially located in a difference Fourier map, but refined using a riding model with with C—H distances in the range 0.95–1.00 Å, O—H = 0.91 and 0.97Å and Uiso(H) = 1.2Ueq(C,O). The methyl H atoms were then constrained to an ideal geometry, with C—H distances of 0.98 Å and Uiso(H) = 1.5Ueq(C), but each group was allowed to rotate freely about its C—C bond.
The complexes of 1,10-phenanthroline-5,6-dione (phendione) could intercalate within the base pairs of DNA (Ghosh et al., 2006; Coyle et al., 2003). Based on this finding, the derivatives of phendione are promising in the treatment of many diseases (Deegan et al., 2006; Eshwika et al., 2004), cancer amongst all, and their development is still in progress. Following our interest in biological activity of metal complexes, we decided to focus our attention on the complexes of phendione (Xu et al., 2006).
The asymmetric unit of complex consists of a monomeric copper(II) complex, one dimethyl sulfoxide (DMSO) molecule and one water molecule. The copper(II) ion is in a five-coordinated environment. The phendione acts as bidentate ligand [Cu—N1 = 2.062 (3)Å and Cu—N2 = 2.059 (3) Å], forming with the metal ion a five-membered chelate ring with a bite angle of 80.38 (12)°. A monodentate dimethyl sulfoxide interacts with copper at a distance [Cu—O3 = 2.019 (3) Å]. Addison et al. (1984) have proposed a structural index for five-coordinated geometries of copper(II). This index has been defined as τ = (β-α)/60, with β and α being the two largest angles. For perfect tetragonal geometry τ equals zero, while it becomes unity for perfect trigonal bipyramidal geometry. From the bond lengths and angles it can be concluded that the coordination geometry around copper(II) is clearly square-pyramidal (τ = 0.14) with a CuN2OCl plane and one chloride ion in the apex. The copper(II) ion is shifted 0.3319 Å out of the plane defined by (N1, N2, O3 and Cl1) and directed towards Cl2.
The water molecule connects the complex and a dimethyl sulfoxide solvent molecule by O—H···O and O—H···Cl hydrogen bonds.
For related literature, see: Addison & Rao (1984); Coyle et al. (2003); Deegan et al. (2006); Eshwika et al. (2004); Ghosh et al. (2006); Xu et al. (2006); Yamada et al. (1992).
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
Fig. 1. Molecular view of the title complex with the atomic labeling scheme. Displacement ellipsoids are shown at the 30% probability level. |
[CuCl2(C12H6N2O2)(C2H6OS)]·C2H6OS·H2O | Z = 2 |
Mr = 518.90 | F(000) = 530 |
Triclinic, P1 | Dx = 1.588 Mg m−3 |
a = 7.213 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 13.285 (4) Å | Cell parameters from 2461 reflections |
c = 13.316 (4) Å | θ = 2.9–27.3° |
α = 61.405 (4)° | µ = 1.47 mm−1 |
β = 76.169 (5)° | T = 293 K |
γ = 86.688 (5)° | Block, green |
V = 1085.5 (6) Å3 | 0.30 × 0.20 × 0.14 mm |
Bruker SMART CCD area-detector diffractometer | 3809 independent reflections |
Radiation source: fine-focus sealed tube | 2886 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
φ and ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −8→8 |
Tmin = 0.654, Tmax = 1.000 | k = −10→15 |
5536 measured reflections | l = −7→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0706P)2] where P = (Fo2 + 2Fc2)/3 |
3809 reflections | (Δ/σ)max < 0.001 |
257 parameters | Δρmax = 0.54 e Å−3 |
0 restraints | Δρmin = −0.50 e Å−3 |
[CuCl2(C12H6N2O2)(C2H6OS)]·C2H6OS·H2O | γ = 86.688 (5)° |
Mr = 518.90 | V = 1085.5 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.213 (2) Å | Mo Kα radiation |
b = 13.285 (4) Å | µ = 1.47 mm−1 |
c = 13.316 (4) Å | T = 293 K |
α = 61.405 (4)° | 0.30 × 0.20 × 0.14 mm |
β = 76.169 (5)° |
Bruker SMART CCD area-detector diffractometer | 3809 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 2886 reflections with I > 2σ(I) |
Tmin = 0.654, Tmax = 1.000 | Rint = 0.024 |
5536 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.54 e Å−3 |
3809 reflections | Δρmin = −0.50 e Å−3 |
257 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.68285 (7) | 0.20517 (4) | 0.11889 (4) | 0.02951 (17) | |
Cl1 | 0.7899 (2) | 0.32022 (10) | −0.08024 (10) | 0.0523 (3) | |
Cl2 | 0.98176 (15) | 0.15681 (9) | 0.19795 (9) | 0.0395 (3) | |
O1 | 0.1728 (5) | −0.2722 (3) | 0.5060 (3) | 0.0508 (9) | |
O2 | 0.3546 (5) | −0.3228 (3) | 0.3314 (3) | 0.0529 (9) | |
N1 | 0.4842 (5) | 0.1080 (3) | 0.2746 (3) | 0.0283 (7) | |
N2 | 0.6593 (4) | 0.0587 (3) | 0.1052 (3) | 0.0273 (7) | |
C1 | 0.4025 (6) | 0.1372 (4) | 0.3593 (4) | 0.0372 (10) | |
H1 | 0.4317 | 0.2103 | 0.3465 | 0.045* | |
C2 | 0.2762 (6) | 0.0620 (4) | 0.4650 (4) | 0.0405 (11) | |
H2 | 0.2214 | 0.0852 | 0.5206 | 0.049* | |
C3 | 0.2336 (6) | −0.0481 (4) | 0.4857 (4) | 0.0376 (10) | |
H3 | 0.1512 | −0.0997 | 0.5559 | 0.045* | |
C4 | 0.3165 (5) | −0.0803 (3) | 0.3994 (3) | 0.0273 (9) | |
C5 | 0.2780 (6) | −0.1980 (4) | 0.4167 (4) | 0.0347 (10) | |
C6 | 0.3800 (6) | −0.2259 (4) | 0.3177 (4) | 0.0353 (10) | |
C7 | 0.5102 (6) | −0.1347 (3) | 0.2090 (4) | 0.0324 (9) | |
C8 | 0.6115 (6) | −0.1544 (4) | 0.1163 (4) | 0.0384 (10) | |
H8 | 0.5950 | −0.2248 | 0.1193 | 0.046* | |
C9 | 0.7360 (6) | −0.0680 (4) | 0.0207 (4) | 0.0393 (10) | |
H9 | 0.8061 | −0.0802 | −0.0404 | 0.047* | |
C10 | 0.7550 (6) | 0.0378 (4) | 0.0173 (3) | 0.0339 (10) | |
H10 | 0.8367 | 0.0960 | −0.0480 | 0.041* | |
C11 | 0.5396 (5) | −0.0261 (3) | 0.2003 (3) | 0.0252 (8) | |
C12 | 0.4413 (5) | 0.0007 (3) | 0.2951 (3) | 0.0252 (8) | |
S1 | 0.79906 (15) | 0.43275 (9) | 0.09613 (9) | 0.0335 (3) | |
O3 | 0.6295 (4) | 0.3409 (2) | 0.1482 (3) | 0.0374 (7) | |
C13 | 0.6938 (8) | 0.5662 (4) | 0.0314 (6) | 0.077 (2) | |
H13A | 0.6706 | 0.5795 | −0.0419 | 0.115* | |
H13B | 0.7790 | 0.6269 | 0.0174 | 0.115* | |
H13C | 0.5750 | 0.5642 | 0.0838 | 0.115* | |
C14 | 0.8440 (11) | 0.4352 (6) | 0.2211 (5) | 0.091 (2) | |
H14A | 0.7293 | 0.4517 | 0.2632 | 0.137* | |
H14B | 0.9432 | 0.4935 | 0.1953 | 0.137* | |
H14C | 0.8837 | 0.3617 | 0.2720 | 0.137* | |
S2 | 0.63777 (15) | 0.62156 (9) | 0.50874 (10) | 0.0376 (3) | |
O4 | 0.6473 (4) | 0.7528 (2) | 0.4453 (3) | 0.0444 (8) | |
C15 | 0.8179 (8) | 0.5835 (4) | 0.4152 (5) | 0.0541 (13) | |
H15A | 0.7891 | 0.6132 | 0.3397 | 0.081* | |
H15B | 0.8198 | 0.5014 | 0.4507 | 0.081* | |
H15C | 0.9409 | 0.6157 | 0.4054 | 0.081* | |
C16 | 0.7491 (7) | 0.5797 (4) | 0.6291 (4) | 0.0469 (12) | |
H16A | 0.8742 | 0.6182 | 0.5997 | 0.070* | |
H16B | 0.7600 | 0.4981 | 0.6666 | 0.070* | |
H16C | 0.6725 | 0.6005 | 0.6852 | 0.070* | |
O5 | 1.0108 (5) | 0.8885 (3) | 0.2676 (3) | 0.0571 (9) | |
H5A | 0.9228 | 0.8233 | 0.3256 | 0.069* | |
H5B | 0.9671 | 0.9578 | 0.2554 | 0.069* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0328 (3) | 0.0211 (3) | 0.0286 (3) | −0.0039 (2) | −0.0017 (2) | −0.0091 (2) |
Cl1 | 0.0765 (9) | 0.0347 (6) | 0.0295 (6) | −0.0109 (6) | −0.0054 (6) | −0.0047 (5) |
Cl2 | 0.0376 (6) | 0.0404 (6) | 0.0410 (6) | 0.0036 (5) | −0.0108 (5) | −0.0193 (5) |
O1 | 0.054 (2) | 0.0378 (19) | 0.0383 (18) | −0.0198 (16) | 0.0016 (15) | −0.0044 (15) |
O2 | 0.077 (2) | 0.0281 (18) | 0.054 (2) | −0.0146 (16) | −0.0163 (18) | −0.0178 (16) |
N1 | 0.0329 (18) | 0.0204 (17) | 0.0331 (18) | −0.0015 (14) | −0.0035 (15) | −0.0157 (15) |
N2 | 0.0269 (17) | 0.0262 (18) | 0.0246 (17) | 0.0007 (14) | −0.0037 (14) | −0.0099 (15) |
C1 | 0.042 (2) | 0.029 (2) | 0.040 (2) | −0.0028 (19) | −0.002 (2) | −0.020 (2) |
C2 | 0.038 (2) | 0.046 (3) | 0.040 (3) | 0.001 (2) | 0.003 (2) | −0.028 (2) |
C3 | 0.034 (2) | 0.039 (3) | 0.032 (2) | −0.002 (2) | 0.0004 (19) | −0.015 (2) |
C4 | 0.026 (2) | 0.025 (2) | 0.027 (2) | −0.0021 (16) | −0.0051 (16) | −0.0104 (18) |
C5 | 0.034 (2) | 0.031 (2) | 0.032 (2) | −0.0051 (19) | −0.0103 (19) | −0.008 (2) |
C6 | 0.040 (2) | 0.030 (2) | 0.036 (2) | −0.0036 (19) | −0.0139 (19) | −0.013 (2) |
C7 | 0.034 (2) | 0.028 (2) | 0.036 (2) | −0.0004 (18) | −0.0123 (18) | −0.0138 (19) |
C8 | 0.052 (3) | 0.031 (2) | 0.042 (3) | 0.007 (2) | −0.016 (2) | −0.024 (2) |
C9 | 0.044 (3) | 0.043 (3) | 0.032 (2) | 0.008 (2) | −0.004 (2) | −0.021 (2) |
C10 | 0.033 (2) | 0.037 (2) | 0.028 (2) | −0.0007 (19) | −0.0020 (18) | −0.015 (2) |
C11 | 0.030 (2) | 0.019 (2) | 0.026 (2) | 0.0039 (16) | −0.0087 (16) | −0.0092 (17) |
C12 | 0.0235 (19) | 0.026 (2) | 0.025 (2) | 0.0014 (16) | −0.0071 (16) | −0.0105 (17) |
S1 | 0.0327 (6) | 0.0236 (5) | 0.0375 (6) | −0.0054 (4) | −0.0021 (5) | −0.0114 (5) |
O3 | 0.0345 (16) | 0.0251 (15) | 0.0463 (17) | −0.0071 (12) | 0.0030 (13) | −0.0170 (14) |
C13 | 0.051 (3) | 0.021 (3) | 0.127 (6) | −0.002 (2) | −0.018 (3) | −0.013 (3) |
C14 | 0.115 (6) | 0.102 (5) | 0.054 (4) | −0.060 (4) | −0.007 (4) | −0.033 (4) |
S2 | 0.0355 (6) | 0.0263 (6) | 0.0487 (7) | 0.0013 (5) | −0.0126 (5) | −0.0151 (5) |
O4 | 0.0537 (19) | 0.0255 (16) | 0.0522 (19) | 0.0075 (14) | −0.0178 (16) | −0.0156 (15) |
C15 | 0.066 (3) | 0.039 (3) | 0.057 (3) | 0.010 (2) | −0.009 (3) | −0.026 (3) |
C16 | 0.050 (3) | 0.037 (3) | 0.049 (3) | 0.004 (2) | −0.017 (2) | −0.015 (2) |
O5 | 0.062 (2) | 0.0375 (19) | 0.061 (2) | 0.0060 (16) | −0.0097 (18) | −0.0177 (17) |
Cu1—O3 | 2.019 (3) | C9—C10 | 1.398 (6) |
Cu1—N2 | 2.059 (3) | C9—H9 | 0.9300 |
Cu1—N1 | 2.062 (3) | C10—H10 | 0.9300 |
Cu1—Cl1 | 2.2894 (13) | C11—C12 | 1.482 (5) |
Cu1—Cl2 | 2.5390 (13) | S1—O3 | 1.557 (3) |
O1—C5 | 1.222 (5) | S1—C13 | 1.776 (5) |
O2—C6 | 1.230 (5) | S1—C14 | 1.785 (5) |
N1—C12 | 1.356 (5) | C13—H13A | 0.9600 |
N1—C1 | 1.358 (5) | C13—H13B | 0.9600 |
N2—C10 | 1.351 (5) | C13—H13C | 0.9600 |
N2—C11 | 1.357 (5) | C14—H14A | 0.9600 |
C1—C2 | 1.398 (6) | C14—H14B | 0.9600 |
C1—H1 | 0.9300 | C14—H14C | 0.9600 |
C2—C3 | 1.390 (6) | S2—O4 | 1.528 (3) |
C2—H2 | 0.9300 | S2—C16 | 1.798 (5) |
C3—C4 | 1.406 (6) | S2—C15 | 1.802 (5) |
C3—H3 | 0.9300 | C15—H15A | 0.9600 |
C4—C12 | 1.407 (5) | C15—H15B | 0.9600 |
C4—C5 | 1.499 (6) | C15—H15C | 0.9600 |
C5—C6 | 1.547 (6) | C16—H16A | 0.9600 |
C6—C7 | 1.500 (6) | C16—H16B | 0.9600 |
C7—C8 | 1.407 (6) | C16—H16C | 0.9600 |
C7—C11 | 1.416 (5) | O5—H5A | 0.9690 |
C8—C9 | 1.385 (6) | O5—H5B | 0.9055 |
C8—H8 | 0.9300 | ||
O3—Cu1—N2 | 164.67 (12) | C10—C9—H9 | 120.4 |
O3—Cu1—N1 | 88.13 (12) | N2—C10—C9 | 122.5 (4) |
N2—Cu1—N1 | 80.35 (12) | N2—C10—H10 | 118.7 |
O3—Cu1—Cl1 | 92.68 (9) | C9—C10—H10 | 118.7 |
N2—Cu1—Cl1 | 93.81 (9) | N2—C11—C7 | 121.9 (3) |
N1—Cu1—Cl1 | 156.11 (10) | N2—C11—C12 | 116.5 (3) |
O3—Cu1—Cl2 | 95.00 (9) | C7—C11—C12 | 121.6 (3) |
N2—Cu1—Cl2 | 96.66 (9) | N1—C12—C4 | 122.9 (3) |
N1—Cu1—Cl2 | 98.39 (10) | N1—C12—C11 | 114.9 (3) |
Cl1—Cu1—Cl2 | 105.31 (5) | C4—C12—C11 | 122.2 (3) |
C12—N1—C1 | 117.9 (3) | O3—S1—C13 | 104.4 (2) |
C12—N1—Cu1 | 114.5 (2) | O3—S1—C14 | 104.6 (2) |
C1—N1—Cu1 | 127.5 (3) | C13—S1—C14 | 100.2 (4) |
C10—N2—C11 | 118.8 (3) | S1—O3—Cu1 | 115.78 (16) |
C10—N2—Cu1 | 127.5 (3) | S1—C13—H13A | 109.5 |
C11—N2—Cu1 | 113.6 (2) | S1—C13—H13B | 109.5 |
N1—C1—C2 | 122.7 (4) | H13A—C13—H13B | 109.5 |
N1—C1—H1 | 118.6 | S1—C13—H13C | 109.5 |
C2—C1—H1 | 118.6 | H13A—C13—H13C | 109.5 |
C3—C2—C1 | 119.1 (4) | H13B—C13—H13C | 109.5 |
C3—C2—H2 | 120.5 | S1—C14—H14A | 109.5 |
C1—C2—H2 | 120.5 | S1—C14—H14B | 109.5 |
C2—C3—C4 | 119.2 (4) | H14A—C14—H14B | 109.5 |
C2—C3—H3 | 120.4 | S1—C14—H14C | 109.5 |
C4—C3—H3 | 120.4 | H14A—C14—H14C | 109.5 |
C3—C4—C12 | 118.2 (4) | H14B—C14—H14C | 109.5 |
C3—C4—C5 | 121.9 (4) | O4—S2—C16 | 106.1 (2) |
C12—C4—C5 | 119.9 (3) | O4—S2—C15 | 105.4 (2) |
O1—C5—C4 | 122.8 (4) | C16—S2—C15 | 99.5 (2) |
O1—C5—C6 | 119.3 (4) | S2—C15—H15A | 109.5 |
C4—C5—C6 | 117.9 (3) | S2—C15—H15B | 109.5 |
O2—C6—C7 | 122.0 (4) | H15A—C15—H15B | 109.5 |
O2—C6—C5 | 119.0 (4) | S2—C15—H15C | 109.5 |
C7—C6—C5 | 118.9 (4) | H15A—C15—H15C | 109.5 |
C8—C7—C11 | 118.3 (4) | H15B—C15—H15C | 109.5 |
C8—C7—C6 | 122.3 (4) | S2—C16—H16A | 109.5 |
C11—C7—C6 | 119.4 (4) | S2—C16—H16B | 109.5 |
C9—C8—C7 | 119.3 (4) | H16A—C16—H16B | 109.5 |
C9—C8—H8 | 120.3 | S2—C16—H16C | 109.5 |
C7—C8—H8 | 120.3 | H16A—C16—H16C | 109.5 |
C8—C9—C10 | 119.2 (4) | H16B—C16—H16C | 109.5 |
C8—C9—H9 | 120.4 | H5A—O5—H5B | 114.7 |
O3—Cu1—N1—C12 | 172.2 (3) | C5—C6—C7—C11 | 1.1 (6) |
N2—Cu1—N1—C12 | 2.4 (3) | C11—C7—C8—C9 | 0.2 (6) |
Cl1—Cu1—N1—C12 | 79.8 (4) | C6—C7—C8—C9 | −177.2 (4) |
Cl2—Cu1—N1—C12 | −93.0 (3) | C7—C8—C9—C10 | −1.4 (6) |
O3—Cu1—N1—C1 | −11.7 (3) | C11—N2—C10—C9 | −0.2 (6) |
N2—Cu1—N1—C1 | 178.5 (4) | Cu1—N2—C10—C9 | 176.0 (3) |
Cl1—Cu1—N1—C1 | −104.1 (4) | C8—C9—C10—N2 | 1.4 (6) |
Cl2—Cu1—N1—C1 | 83.1 (3) | C10—N2—C11—C7 | −1.0 (5) |
O3—Cu1—N2—C10 | 139.4 (4) | Cu1—N2—C11—C7 | −177.7 (3) |
N1—Cu1—N2—C10 | −178.8 (3) | C10—N2—C11—C12 | 178.8 (3) |
Cl1—Cu1—N2—C10 | 24.6 (3) | Cu1—N2—C11—C12 | 2.1 (4) |
Cl2—Cu1—N2—C10 | −81.3 (3) | C8—C7—C11—N2 | 1.0 (6) |
O3—Cu1—N2—C11 | −44.2 (6) | C6—C7—C11—N2 | 178.5 (3) |
N1—Cu1—N2—C11 | −2.4 (2) | C8—C7—C11—C12 | −178.8 (3) |
Cl1—Cu1—N2—C11 | −159.1 (2) | C6—C7—C11—C12 | −1.3 (6) |
Cl2—Cu1—N2—C11 | 95.0 (2) | C1—N1—C12—C4 | 0.1 (6) |
C12—N1—C1—C2 | −0.5 (6) | Cu1—N1—C12—C4 | 176.6 (3) |
Cu1—N1—C1—C2 | −176.5 (3) | C1—N1—C12—C11 | −178.5 (3) |
N1—C1—C2—C3 | 0.9 (7) | Cu1—N1—C12—C11 | −2.0 (4) |
C1—C2—C3—C4 | −0.8 (7) | C3—C4—C12—N1 | −0.1 (6) |
C2—C3—C4—C12 | 0.5 (6) | C5—C4—C12—N1 | −179.1 (3) |
C2—C3—C4—C5 | 179.4 (4) | C3—C4—C12—C11 | 178.4 (4) |
C3—C4—C5—O1 | 0.2 (6) | C5—C4—C12—C11 | −0.6 (5) |
C12—C4—C5—O1 | 179.1 (4) | N2—C11—C12—N1 | −0.1 (5) |
C3—C4—C5—C6 | −178.6 (4) | C7—C11—C12—N1 | 179.7 (3) |
C12—C4—C5—C6 | 0.4 (5) | N2—C11—C12—C4 | −178.7 (3) |
O1—C5—C6—O2 | −0.8 (6) | C7—C11—C12—C4 | 1.1 (6) |
C4—C5—C6—O2 | 178.0 (4) | C13—S1—O3—Cu1 | 135.8 (3) |
O1—C5—C6—C7 | −179.4 (4) | C14—S1—O3—Cu1 | −119.4 (3) |
C4—C5—C6—C7 | −0.6 (6) | N2—Cu1—O3—S1 | −168.1 (4) |
O2—C6—C7—C8 | −0.1 (6) | N1—Cu1—O3—S1 | 150.76 (19) |
C5—C6—C7—C8 | 178.5 (4) | Cl1—Cu1—O3—S1 | −53.13 (18) |
O2—C6—C7—C11 | −177.5 (4) | Cl2—Cu1—O3—S1 | 52.50 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O4 | 0.97 | 2.15 | 3.037 (5) | 151 |
O5—H5B···Cl2i | 0.91 | 2.38 | 3.233 (5) | 158 |
Symmetry code: (i) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [CuCl2(C12H6N2O2)(C2H6OS)]·C2H6OS·H2O |
Mr | 518.90 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.213 (2), 13.285 (4), 13.316 (4) |
α, β, γ (°) | 61.405 (4), 76.169 (5), 86.688 (5) |
V (Å3) | 1085.5 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.47 |
Crystal size (mm) | 0.30 × 0.20 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.654, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5536, 3809, 2886 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.121, 1.04 |
No. of reflections | 3809 |
No. of parameters | 257 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.54, −0.50 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O4 | 0.97 | 2.15 | 3.037 (5) | 151 |
O5—H5B···Cl2i | 0.91 | 2.38 | 3.233 (5) | 158 |
Symmetry code: (i) x, y+1, z. |
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The complexes of 1,10-phenanthroline-5,6-dione (phendione) could intercalate within the base pairs of DNA (Ghosh et al., 2006; Coyle et al., 2003). Based on this finding, the derivatives of phendione are promising in the treatment of many diseases (Deegan et al., 2006; Eshwika et al., 2004), cancer amongst all, and their development is still in progress. Following our interest in biological activity of metal complexes, we decided to focus our attention on the complexes of phendione (Xu et al., 2006).
The asymmetric unit of complex consists of a monomeric copper(II) complex, one dimethyl sulfoxide (DMSO) molecule and one water molecule. The copper(II) ion is in a five-coordinated environment. The phendione acts as bidentate ligand [Cu—N1 = 2.062 (3)Å and Cu—N2 = 2.059 (3) Å], forming with the metal ion a five-membered chelate ring with a bite angle of 80.38 (12)°. A monodentate dimethyl sulfoxide interacts with copper at a distance [Cu—O3 = 2.019 (3) Å]. Addison et al. (1984) have proposed a structural index for five-coordinated geometries of copper(II). This index has been defined as τ = (β-α)/60, with β and α being the two largest angles. For perfect tetragonal geometry τ equals zero, while it becomes unity for perfect trigonal bipyramidal geometry. From the bond lengths and angles it can be concluded that the coordination geometry around copper(II) is clearly square-pyramidal (τ = 0.14) with a CuN2OCl plane and one chloride ion in the apex. The copper(II) ion is shifted 0.3319 Å out of the plane defined by (N1, N2, O3 and Cl1) and directed towards Cl2.
The water molecule connects the complex and a dimethyl sulfoxide solvent molecule by O—H···O and O—H···Cl hydrogen bonds.