research papers
The crystal structure of a polymorph of copper phthalocyanine (CuPc) grown on a KCl substrate is redetermined by transmission electron diffraction. It has a triclinic unit cell containing one molecule; the crystal does not have a herringbone-type molecular arrangement, which is a common packing mode of planar phthalocyanines. The molecular packing is determined by the diffraction intensity with the aid of the calculation of molecular packing energy. One of the striking features of this polymorph is its stacking mode within a molecular column: the molecular stacking direction projected on a molecular plane is different by an angle of about 45° from that of the α-modifications of platinum phthalocyanine (PtPc) and metal-free phthalocyanine (H2Pc). A powder X-ray diffraction profile calculated for the polymorph agrees well with that of so-called α-CuPc and Rietveld analysis for α-CuPc indicates that the CuPc crystals grown on KCl are actually α-CuPc; hence, α-CuPc is not isostructural with either α-PtPc or α-H2Pc. On the basis of the present results and the reported crystal structures of the planar phthalocyanines that form molecular columns, the polymorphs of the phthalocyanines can be classified into four types distinguished by the molecular stacking mode within the column: α(×)-, α(+)-, β(×)- and β(+)-types.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S010876810300942X/bk0130sup1.cif | |
Rietveld powder data file (CIF format) https://doi.org/10.1107/S010876810300942X/bk0130Isup2.rtv | |
Portable Document Format (PDF) file https://doi.org/10.1107/S010876810300942X/bk0130sup3.pdf |
CCDC reference: 219250
Computing details top
Data collection: R-AXIS (Rigaku, 1996); program(s) used to refine structure: RIETAN2000 (Izumi, 2002b).
Phthalocyaninato-copper(ii) top
Crystal data top
C32H16CuN8 | V = 582.3 (5) Å3 |
Mr = 576.07 | Z = 1 |
Triclinic, P1 | F(000) = 293 |
Hall symbol: -P 1 | Dx = 1.643 Mg m−3 |
a = 12.886 (2) Å | Cu Kα1, Cu Kα2 radiation, λ = 1.54056, 1.54439 Å |
b = 3.769 (3) Å | µ = 1.67 mm−1 |
c = 12.061 (3) Å | T = 295 K |
α = 96.22 (7)° | dark blue |
β = 90.62 (4)° | cylinder, 5 × 0.3 mm |
γ = 90.32 (8)° |
Data collection top
Rigaku RU-3V diffractometer | Specimen mounting: quartz capillary |
Radiation source: rotating-anode tube | Data collection mode: transmission |
Equatorial mounted graphite monochromator | Scan method: Stationary detector |
Refinement top
Refinement on Inet | Profile function: pseudo-Voigt |
Rp = 0.024 | 83 parameters |
Rwp = 0.033 | 68 restraints |
Rexp = 0.016 | H-atom parameters not defined |
1807 data points | 1/yi |
Excluded region(s): 60 to 95.8 degrees too small peak intensities | Background function: Legendre polynomial |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
Cu1 | 0 | 0 | 0 | 0.0317* | |
C1 | 0.2276 (19) | −0.08 (2) | 0.036 (3) | 0.0317* | |
C2 | 0.312 (3) | 0.04 (2) | 0.115 (5) | 0.0317* | |
C3 | 0.419 (4) | −0.02 (2) | 0.117 (3) | 0.0317* | |
C4 | 0.473 (3) | 0.08 (3) | 0.217 (7) | 0.0317* | |
C5 | 0.428 (7) | 0.32 (3) | 0.299 (6) | 0.0317* | |
C6 | 0.322 (3) | 0.38 (3) | 0.297 (8) | 0.0317* | |
C7 | 0.265 (5) | 0.25 (3) | 0.204 (7) | 0.0317* | |
C8 | 0.155 (5) | 0.22 (3) | 0.182 (5) | 0.0317* | |
C9 | −0.016 (4) | 0.38 (2) | 0.232 (3) | 0.0317* | |
C10 | −0.089 (3) | 0.57 (4) | 0.308 (7) | 0.0317* | |
C11 | −0.0762 (19) | 0.77 (3) | 0.410 (7) | 0.0317* | |
C12 | −0.163 (2) | 0.89 (3) | 0.467 (6) | 0.0317* | |
C13 | −0.262 (4) | 0.83 (3) | 0.417 (5) | 0.0317* | |
C14 | −0.272 (4) | 0.70 (3) | 0.306 (5) | 0.0317* | |
C15 | −0.186 (2) | 0.55 (3) | 0.253 (5) | 0.0317* | |
C16 | −0.168 (2) | 0.34 (3) | 0.143 (5) | 0.0317* | |
N1 | 0.245 (2) | −0.26 (2) | −0.067 (4) | 0.0317* | |
N2 | 0.134 (2) | 0.05 (2) | 0.077 (5) | 0.0317* | |
N3 | 0.086 (4) | 0.37 (3) | 0.256 (5) | 0.0317* | |
N4 | −0.064 (2) | 0.25 (2) | 0.132 (3) | 0.0317* |
Geometric parameters (Å, º) top
Cu1—N2 | 1.95 (3) | C8—N3 | 1.34 (9) |
Cu1—N4 | 1.96 (5) | C9—C10 | 1.47 (10) |
C1—N1 | 1.36 (7) | C9—N3 | 1.34 (7) |
C1—N2 | 1.38 (5) | C9—N4 | 1.38 (6) |
C1—C2 | 1.48 (6) | C10—C11 | 1.38 (13) |
C2—C3 | 1.40 (7) | C10—C15 | 1.41 (6) |
C2—C7 | 1.42 (11) | C11—C12 | 1.36 (7) |
C3—C4 | 1.39 (8) | C12—C13 | 1.41 (7) |
C4—C5 | 1.41 (12) | C13—C14 | 1.39 (8) |
C5—C6 | 1.38 (10) | C14—C15 | 1.38 (9) |
C6—C7 | 1.38 (11) | C15—C16 | 1.48 (10) |
C7—C8 | 1.44 (9) | C16—N1i | 1.36 (6) |
C8—N2 | 1.38 (9) | C16—N4 | 1.38 (5) |
N2—Cu1—N4i | 90.9 (19) | C5—C4—C3 | 120 (6) |
Cu1—N4i—C16i | 126 (4) | C4—C3—C2 | 118 (5) |
N4i—C16i—N1 | 127 (6) | C9—N4—C16 | 107 (5) |
C16i—N1—C1 | 123 (4) | N4—C16—C15 | 110 (4) |
N1—C1—N2 | 127 (3) | C16—C15—C10 | 106 (5) |
C1—N2—Cu1 | 126 (4) | C15—C10—C9 | 106 (7) |
N2—Cu1—N4 | 89.1 (19) | C10—C9—N4 | 111 (4) |
Cu1—N4—C9 | 127 (3) | C10—C15—C14 | 120 (6) |
N4—C9—N3 | 127 (5) | C15—C14—C13 | 118 (5) |
C9—N3—C8 | 122 (6) | C14—C13—C12 | 120 (5) |
N3—C8—N2 | 128 (5) | C13—C12—C11 | 121 (7) |
C8—N2—Cu1 | 127 (4) | C12—C11—C10 | 118 (4) |
C1—N2—C8 | 107 (4) | C11—C10—C15 | 121 (7) |
N2—C8—C7 | 111 (6) | C14—C15—C16 | 134 (4) |
C8—C7—C2 | 106 (7) | C15—C16—N1i | 123 (4) |
C7—C2—C1 | 106 (4) | N1—C1—C2 | 123 (3) |
C2—C1—N2 | 110 (4) | C1—C2—C3 | 134 (5) |
C3—C2—C7 | 120 (5) | C11—C10—C9 | 133 (4) |
C2—C7—C6 | 120 (6) | C10—C9—N3 | 121 (5) |
C7—C6—C5 | 119 (7) | N3—C8—C7 | 121 (7) |
C6—C5—C4 | 120 (7) | C8—C7—C6 | 133 (7) |
Symmetry code: (i) −x, −y, −z. |