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The structures of three isomorphous compounds, namely bis(2,6-dibromopyridinium) tetrabromidocuprate(II) dihydrate, (C
5H
4Br
2N)
2[CuBr
4]·2H
2O, bis(2,6-dibromopyridinium) tetrabromidocadmate(II) dihydrate, (C
5H
4Br
2N)
2[CdBr
4]·2H
2O, and bis(2,6-dibromopyridinium) tetrabromidomercurate(II) dihydrate, (C
5H
4Br
2N)
2[HgBr
4]·2H
2O, show a crystal supramolecularity represented by
M—Br
H—O—H
Br—
M intermolecular interactions along with (π)N—H
OH
2 hydrogen-bonding interactions forming layers connected
via aryl–aryl face-to-face stacking of cations, leading to a three-dimensional network. The anions have significantly distorted tetrahedral geometry and crystallographic
C2 symmetry. The stability of this crystal lattice is evidenced by the crystallization of a whole series of isomorphous compounds.
Supporting information
CCDC references: 721360; 721361; 721362
All compounds were synthesized by dissolving 2,6-dibromopyridine (2 mmol) in 95% EtOH (10 ml, with warming) and an additional 2 ml of HBr (60%). The solution was added slowly with constant stirring to a warm solution of MII salts, CuBr2,CdBr2 and HgCl2 (1 mmol), dissolved in EtOH (10 ml). The resulting mixture was refluxed for 2 h, cooled undisturbed at room temperature and allowed to evaporate slowly until crystals appeared (generally in a few days). The products were as follows: (2,6-dbpH)2[CuBr4]·2H2O, (I), brown crystals, yield 90%; (2,6-dbpH)2[CdBr4]·2H2O, (II), colourless parallelepiped crystals, yield 84%; (2,6-dbpH)2[HgBr4]·2H2O,(III), colourless crystals, yield 82%.
H atoms were positioned geometrically, with NH = 0.86 Å and CH = 0.93 Å, and constrained to ride on their parent atoms, with Uiso(H) = 1.2[U?]eq(C, N). The water H atoms were located first in a difference Fourier map, then refined with restraints [O—H: 0.88 (1) Å] and finally allowed to ride. There is some disorder in the water molecules in all three structures, reflected in the thermal ellipsoids for the water O atoms being quite elongated in a direction perpendicular to the molecular plane, particularly in (I). However, refinement of the water O atoms over several locations with partial occupancy did not improve the picture for what [and?] a single site model with a large displacement factor was preferred.
For all compounds, data collection: SMART (Bruker, 2001); cell refinement: SAINTPlus (Bruker, 2001); data reduction: SAINTPlus (Bruker, 2001); program(s) used to solve structure: XS, SHELXTL (Sheldrick, 2008); program(s) used to refine structure: XL, SHELXTL (Sheldrick, 2008); molecular graphics: XP, SHELXTL (Sheldrick, 2008); software used to prepare material for publication: XCIF, SHELXTL (Sheldrick, 2008).
(I) bis(2,6-dibromopyridinium) tetrabromidocuprate(II) dihydrate
top
Crystal data top
(C5H4Br2N)2[CuBr4]·2H2O | F(000) = 1644 |
Mr = 894.97 | Dx = 2.729 Mg m−3 |
Orthorhombic, Pccn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ab 2ac | Cell parameters from 4142 reflections |
a = 10.2861 (7) Å | θ = 2.5–26.9° |
b = 13.4443 (9) Å | µ = 15.68 mm−1 |
c = 15.7523 (11) Å | T = 296 K |
V = 2178.4 (3) Å3 | Fragment, brown |
Z = 4 | 0.22 × 0.16 × 0.12 mm |
Data collection top
Bruker/Siemens SMART APEX diffractometer | 1921 independent reflections |
Radiation source: fine-focus sealed tube | 1426 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.067 |
Detector resolution: 8.3 pixels mm-1 | θmax = 25.0°, θmin = 2.6° |
ω scans | h = −12→12 |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | k = −15→15 |
Tmin = 0.130, Tmax = 0.255 | l = −18→18 |
19097 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H-atom parameters constrained |
wR(F2) = 0.088 | w = 1/[σ2(Fo2) + (0.0342P)2 + 3.8947P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
1921 reflections | Δρmax = 1.32 e Å−3 |
106 parameters | Δρmin = −0.49 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc^*^=kFc[1+0.001xFc^2^λ^3^/sin(2θ)]^-1/4^ |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00064 (8) |
Crystal data top
(C5H4Br2N)2[CuBr4]·2H2O | V = 2178.4 (3) Å3 |
Mr = 894.97 | Z = 4 |
Orthorhombic, Pccn | Mo Kα radiation |
a = 10.2861 (7) Å | µ = 15.68 mm−1 |
b = 13.4443 (9) Å | T = 296 K |
c = 15.7523 (11) Å | 0.22 × 0.16 × 0.12 mm |
Data collection top
Bruker/Siemens SMART APEX diffractometer | 1921 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 1426 reflections with I > 2σ(I) |
Tmin = 0.130, Tmax = 0.255 | Rint = 0.067 |
19097 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.03 | Δρmax = 1.32 e Å−3 |
1921 reflections | Δρmin = −0.49 e Å−3 |
106 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.3876 (4) | 0.1195 (3) | 0.1609 (3) | 0.0339 (11) | |
H1 | 0.4712 | 0.1205 | 0.1603 | 0.041* | |
Br1 | 0.64522 (6) | 0.36123 (5) | 0.31699 (4) | 0.0454 (2) | |
Cu1 | 0.7500 | 0.2500 | 0.41253 (6) | 0.0347 (3) | |
O1 | 0.6405 (4) | 0.1167 (5) | 0.1624 (3) | 0.0748 (18) | |
H1' | 0.6956 | 0.1393 | 0.2009 | 0.112* | |
H2' | 0.6796 | 0.0836 | 0.1210 | 0.112* | |
C2 | 0.3226 (6) | 0.1206 (4) | 0.0875 (4) | 0.0347 (13) | |
Br2 | 0.84739 (6) | 0.36789 (5) | 0.50528 (4) | 0.0487 (2) | |
C3 | 0.1898 (6) | 0.1195 (4) | 0.0853 (4) | 0.0431 (15) | |
H3 | 0.1457 | 0.1187 | 0.0338 | 0.052* | |
Br3 | 0.42358 (7) | 0.12737 (5) | −0.01139 (4) | 0.0525 (2) | |
C4 | 0.1206 (7) | 0.1196 (4) | 0.1632 (4) | 0.0478 (16) | |
H4 | 0.0302 | 0.1219 | 0.1643 | 0.057* | |
Br4 | 0.42840 (7) | 0.11425 (5) | 0.33258 (4) | 0.0520 (2) | |
C5 | 0.1922 (6) | 0.1161 (4) | 0.2373 (4) | 0.0431 (15) | |
H5 | 0.1496 | 0.1132 | 0.2894 | 0.052* | |
C6 | 0.3256 (6) | 0.1169 (4) | 0.2349 (4) | 0.0390 (14) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.031 (2) | 0.034 (3) | 0.036 (3) | 0.0022 (19) | −0.001 (2) | 0.002 (2) |
Br1 | 0.0400 (4) | 0.0507 (4) | 0.0455 (4) | 0.0069 (3) | −0.0023 (3) | 0.0129 (3) |
Cu1 | 0.0364 (5) | 0.0396 (5) | 0.0280 (5) | 0.0025 (4) | 0.000 | 0.000 |
O1 | 0.026 (2) | 0.168 (6) | 0.030 (3) | −0.007 (3) | −0.0011 (19) | −0.006 (3) |
C2 | 0.040 (3) | 0.029 (3) | 0.035 (3) | −0.004 (3) | −0.001 (3) | 0.000 (2) |
Br2 | 0.0420 (4) | 0.0609 (4) | 0.0433 (4) | −0.0062 (3) | −0.0016 (3) | −0.0151 (3) |
C3 | 0.036 (3) | 0.046 (4) | 0.047 (4) | −0.002 (3) | −0.008 (3) | 0.003 (3) |
Br3 | 0.0519 (4) | 0.0710 (5) | 0.0346 (4) | −0.0048 (3) | 0.0024 (3) | 0.0034 (3) |
C4 | 0.046 (4) | 0.041 (4) | 0.056 (5) | −0.003 (3) | −0.013 (3) | 0.003 (3) |
Br4 | 0.0515 (4) | 0.0713 (5) | 0.0332 (4) | −0.0048 (3) | −0.0035 (3) | 0.0001 (3) |
C5 | 0.040 (3) | 0.051 (4) | 0.039 (4) | −0.003 (3) | 0.012 (3) | −0.001 (3) |
C6 | 0.042 (4) | 0.035 (3) | 0.040 (4) | −0.004 (3) | 0.002 (3) | −0.003 (3) |
Geometric parameters (Å, º) top
N1—C6 | 1.329 (7) | C2—Br3 | 1.875 (6) |
N1—C2 | 1.336 (7) | C3—C4 | 1.419 (9) |
N1—H1 | 0.8600 | C3—H3 | 0.9300 |
Cu1—Br1 | 2.3797 (8) | C4—C5 | 1.382 (8) |
Cu1—Br2 | 2.3770 (8) | C4—H4 | 0.9300 |
O1—H1' | 0.8837 | Br4—C6 | 1.867 (6) |
O1—H2' | 0.8866 | C5—C6 | 1.372 (8) |
C2—C3 | 1.366 (9) | C5—H5 | 0.9300 |
| | | |
C6—N1—C2 | 121.2 (5) | C2—C3—C4 | 118.7 (6) |
C6—N1—H1 | 119.4 | C2—C3—H3 | 120.7 |
C2—N1—H1 | 119.4 | C4—C3—H3 | 120.7 |
Br2—Cu1—Br2i | 104.15 (5) | C5—C4—C3 | 117.6 (6) |
Br2—Cu1—Br1i | 128.09 (2) | C5—C4—H4 | 121.2 |
Br2i—Cu1—Br1i | 99.24 (2) | C3—C4—H4 | 121.2 |
Br2—Cu1—Br1 | 99.24 (2) | C6—C5—C4 | 120.6 (6) |
Br2i—Cu1—Br1 | 128.09 (2) | C6—C5—H5 | 119.7 |
Br1i—Cu1—Br1 | 101.54 (5) | C4—C5—H5 | 119.7 |
H1'—O1—H2' | 112.8 | N1—C6—C5 | 120.3 (6) |
N1—C2—C3 | 121.5 (6) | N1—C6—Br4 | 116.8 (4) |
N1—C2—Br3 | 116.3 (4) | C5—C6—Br4 | 122.9 (5) |
C3—C2—Br3 | 122.2 (5) | | |
| | | |
C6—N1—C2—C3 | 0.3 (8) | C3—C4—C5—C6 | 2.7 (9) |
C6—N1—C2—Br3 | 178.6 (4) | C2—N1—C6—C5 | −0.6 (8) |
N1—C2—C3—C4 | 1.5 (9) | C2—N1—C6—Br4 | 179.4 (4) |
Br3—C2—C3—C4 | −176.7 (4) | C4—C5—C6—N1 | −1.0 (9) |
C2—C3—C4—C5 | −3.0 (8) | C4—C5—C6—Br4 | 179.1 (4) |
Symmetry code: (i) −x+3/2, −y+1/2, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.86 | 1.74 | 2.602 (6) | 177 |
O1—H1′···Br1i | 0.88 | 2.45 | 3.298 (4) | 160 |
O1—H2′···Br2ii | 0.89 | 2.59 | 3.271 (4) | 134 |
C4—H4···Br1iii | 0.93 | 3.02 | 3.662 (7) | 128 |
C5—H5···Br1iii | 0.93 | 3.08 | 3.703 (6) | 126 |
Symmetry codes: (i) −x+3/2, −y+1/2, z; (ii) x, −y+1/2, z−1/2; (iii) −x+1/2, −y+1/2, z. |
(II) bis(2,6-dibromopyridinium) tetrabromidocadmate(II) dihydrate
top
Crystal data top
(C5H4Br2N)2[CdBr4]·2H2O | F(000) = 1720 |
Mr = 943.83 | Dx = 2.788 Mg m−3 |
Orthorhombic, Pccn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ab 2ac | Cell parameters from 5378 reflections |
a = 10.6168 (7) Å | θ = 2.4–28.5° |
b = 13.5358 (9) Å | µ = 15.19 mm−1 |
c = 15.6473 (11) Å | T = 296 K |
V = 2248.6 (3) Å3 | Parallepiped, colourless |
Z = 4 | 0.16 × 0.16 × 0.04 mm |
Data collection top
Bruker/Siemens SMART APEX diffractometer | 2034 independent reflections |
Radiation source: fine-focus sealed tube | 1607 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.068 |
Detector resolution: 8.3 pixels mm-1 | θmax = 25.2°, θmin = 2.8° |
ω scan | h = −12→12 |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | k = −16→16 |
Tmin = 0.111, Tmax = 0.551 | l = −18→18 |
20158 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.064 | H-atom parameters constrained |
S = 1.04 | w = 1/[s2(Fo2) + (0.0268P)2] where P = (Fo2 + 2Fc2)/3 |
2034 reflections | (Δ/σ)max = 0.001 |
105 parameters | Δρmax = 0.43 e Å−3 |
0 restraints | Δρmin = −0.39 e Å−3 |
Crystal data top
(C5H4Br2N)2[CdBr4]·2H2O | V = 2248.6 (3) Å3 |
Mr = 943.83 | Z = 4 |
Orthorhombic, Pccn | Mo Kα radiation |
a = 10.6168 (7) Å | µ = 15.19 mm−1 |
b = 13.5358 (9) Å | T = 296 K |
c = 15.6473 (11) Å | 0.16 × 0.16 × 0.04 mm |
Data collection top
Bruker/Siemens SMART APEX diffractometer | 2034 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 1607 reflections with I > 2σ(I) |
Tmin = 0.111, Tmax = 0.551 | Rint = 0.068 |
20158 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.064 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.43 e Å−3 |
2034 reflections | Δρmin = −0.39 e Å−3 |
105 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.3993 (3) | 0.1188 (3) | 0.1583 (2) | 0.0353 (9) | |
H1 | 0.4803 | 0.1203 | 0.1579 | 0.042* | |
Br1 | 0.61989 (4) | 0.35982 (4) | 0.30928 (3) | 0.04893 (16) | |
Cd1 | 0.7500 | 0.2500 | 0.41263 (3) | 0.03762 (15) | |
O1 | 0.6475 (3) | 0.1097 (3) | 0.1599 (2) | 0.0723 (13) | |
H1' | 0.6956 | 0.1393 | 0.2009 | 0.108* | |
H2' | 0.6796 | 0.0836 | 0.1210 | 0.108* | |
C2 | 0.3362 (4) | 0.1209 (3) | 0.0842 (3) | 0.0390 (11) | |
Br2 | 0.87009 (4) | 0.37414 (4) | 0.50762 (3) | 0.05094 (16) | |
C3 | 0.2070 (4) | 0.1206 (4) | 0.0826 (3) | 0.0488 (12) | |
H3 | 0.1632 | 0.1218 | 0.0311 | 0.059* | |
Br3 | 0.43117 (5) | 0.12726 (4) | −0.01609 (3) | 0.05361 (16) | |
C4 | 0.1440 (4) | 0.1183 (4) | 0.1602 (3) | 0.0503 (13) | |
H4 | 0.0564 | 0.1187 | 0.1608 | 0.060* | |
Br4 | 0.43658 (5) | 0.10859 (4) | 0.33169 (3) | 0.05349 (16) | |
C5 | 0.2083 (4) | 0.1155 (4) | 0.2357 (3) | 0.0467 (12) | |
H5 | 0.1655 | 0.1143 | 0.2875 | 0.056* | |
C6 | 0.3378 (4) | 0.1145 (3) | 0.2335 (3) | 0.0402 (11) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0289 (18) | 0.039 (2) | 0.038 (2) | −0.0010 (15) | −0.0020 (15) | 0.0024 (16) |
Br1 | 0.0422 (3) | 0.0584 (4) | 0.0462 (3) | 0.0062 (2) | −0.0018 (2) | 0.0138 (2) |
Cd1 | 0.0362 (2) | 0.0434 (3) | 0.0333 (3) | 0.0002 (2) | 0.000 | 0.000 |
O1 | 0.036 (2) | 0.133 (4) | 0.049 (2) | −0.0082 (19) | 0.0015 (14) | −0.009 (2) |
C2 | 0.041 (3) | 0.031 (3) | 0.045 (3) | −0.0023 (18) | 0.005 (2) | 0.006 (2) |
Br2 | 0.0430 (3) | 0.0635 (4) | 0.0464 (3) | −0.0091 (2) | −0.0004 (2) | −0.0144 (2) |
C3 | 0.043 (3) | 0.051 (3) | 0.052 (3) | −0.001 (2) | −0.011 (2) | 0.003 (2) |
Br3 | 0.0529 (3) | 0.0697 (4) | 0.0382 (3) | −0.0056 (2) | 0.0043 (2) | 0.0041 (2) |
C4 | 0.035 (3) | 0.060 (4) | 0.056 (3) | −0.003 (2) | 0.002 (2) | 0.003 (3) |
Br4 | 0.0546 (3) | 0.0683 (4) | 0.0377 (3) | −0.0061 (2) | −0.0046 (2) | 0.0006 (2) |
C5 | 0.038 (2) | 0.054 (3) | 0.049 (3) | 0.000 (2) | 0.007 (2) | 0.001 (2) |
C6 | 0.044 (3) | 0.039 (3) | 0.038 (3) | 0.000 (2) | −0.001 (2) | −0.002 (2) |
Geometric parameters (Å, º) top
N1—C2 | 1.339 (5) | C2—C3 | 1.372 (6) |
N1—C6 | 1.345 (5) | C2—Br3 | 1.868 (4) |
N1—H1 | 0.8600 | C3—C4 | 1.386 (6) |
Br1—Cd1 | 2.5947 (5) | C3—H3 | 0.9300 |
Cd1—Br2 | 2.5803 (5) | C4—C5 | 1.365 (6) |
Cd1—Br2i | 2.5803 (5) | C4—H4 | 0.9300 |
Cd1—Br1i | 2.5947 (5) | Br4—C6 | 1.862 (4) |
O1—H1' | 0.9122 | C5—C6 | 1.376 (6) |
O1—H2' | 0.7827 | C5—H5 | 0.9300 |
| | | |
C2—N1—C6 | 121.0 (4) | C2—C3—C4 | 117.8 (5) |
C2—N1—H1 | 119.5 | C2—C3—H3 | 121.1 |
C6—N1—H1 | 119.5 | C4—C3—H3 | 121.1 |
Br2—Cd1—Br2i | 109.65 (3) | C5—C4—C3 | 121.2 (4) |
Br2—Cd1—Br1i | 117.970 (16) | C5—C4—H4 | 119.4 |
Br2i—Cd1—Br1i | 104.417 (19) | C3—C4—H4 | 119.4 |
Br2—Cd1—Br1 | 104.417 (19) | C4—C5—C6 | 118.6 (4) |
Br2i—Cd1—Br1 | 117.970 (16) | C4—C5—H5 | 120.7 |
Br1i—Cd1—Br1 | 102.90 (3) | C6—C5—H5 | 120.7 |
H1'—O1—H2' | 120.1 | N1—C6—C5 | 120.4 (4) |
N1—C2—C3 | 121.1 (4) | N1—C6—Br4 | 116.7 (3) |
N1—C2—Br3 | 117.3 (3) | C5—C6—Br4 | 122.9 (3) |
C3—C2—Br3 | 121.6 (4) | | |
| | | |
C6—N1—C2—C3 | 1.3 (6) | C3—C4—C5—C6 | −0.3 (8) |
C6—N1—C2—Br3 | 179.8 (3) | C2—N1—C6—C5 | −2.2 (6) |
N1—C2—C3—C4 | 0.2 (6) | C2—N1—C6—Br4 | 178.4 (3) |
Br3—C2—C3—C4 | −178.4 (4) | C4—C5—C6—N1 | 1.7 (6) |
C2—C3—C4—C5 | −0.6 (8) | C4—C5—C6—Br4 | −178.9 (4) |
Symmetry code: (i) −x+3/2, −y+1/2, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.86 | 1.78 | 2.639 (4) | 174 |
O1—H1′···Br1i | 0.91 | 2.59 | 3.425 (3) | 152 |
O1—H2′···Br2ii | 0.78 | 2.75 | 3.363 (3) | 137 |
C4—H4···Br1iii | 0.93 | 3.00 | 3.658 (5) | 129 |
C5—H5···Br1iii | 0.93 | 3.07 | 3.685 (4) | 125 |
Symmetry codes: (i) −x+3/2, −y+1/2, z; (ii) x, −y+1/2, z−1/2; (iii) −x+1/2, −y+1/2, z. |
(III) bis(2,6-dibromopyridinium) tetrabromidomercurate(II) dihydrate
top
Crystal data top
(C5H4Br2N)2[HgBr4]·2H2O | F(000) = 1848 |
Mr = 1032.01 | Dx = 3.055 Mg m−3 |
Orthorhombic, Pccn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ab 2ac | Cell parameters from 3699 reflections |
a = 10.6328 (7) Å | θ = 2.4–28.5° |
b = 13.5144 (9) Å | µ = 21.11 mm−1 |
c = 15.6141 (11) Å | T = 296 K |
V = 2243.7 (3) Å3 | Chunk, colourless |
Z = 4 | 0.22 × 0.20 × 0.14 mm |
Data collection top
Bruker/Siemens SMART APEX diffractometer | 2024 independent reflections |
Radiation source: fine-focus sealed tube | 1535 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.061 |
Detector resolution: 8.3 pixels mm-1 | θmax = 25.3°, θmin = 2.4° |
ω scans | h = −12→9 |
Absorption correction: numerical (SADABS; Bruker, 2001) | k = −15→16 |
Tmin = 0.019, Tmax = 0.051 | l = −18→18 |
13744 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.03 | w = 1/[s2(Fo2) + (0.0297P)2] where P = (Fo2 + 2Fc2)/3 |
2024 reflections | (Δ/σ)max < 0.001 |
105 parameters | Δρmax = 0.94 e Å−3 |
0 restraints | Δρmin = −0.68 e Å−3 |
Crystal data top
(C5H4Br2N)2[HgBr4]·2H2O | V = 2243.7 (3) Å3 |
Mr = 1032.01 | Z = 4 |
Orthorhombic, Pccn | Mo Kα radiation |
a = 10.6328 (7) Å | µ = 21.11 mm−1 |
b = 13.5144 (9) Å | T = 296 K |
c = 15.6141 (11) Å | 0.22 × 0.20 × 0.14 mm |
Data collection top
Bruker/Siemens SMART APEX diffractometer | 2024 independent reflections |
Absorption correction: numerical (SADABS; Bruker, 2001) | 1535 reflections with I > 2σ(I) |
Tmin = 0.019, Tmax = 0.051 | Rint = 0.061 |
13744 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.94 e Å−3 |
2024 reflections | Δρmin = −0.68 e Å−3 |
105 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.3992 (5) | 0.1193 (3) | 0.1580 (3) | 0.0325 (12) | |
H1 | 0.4800 | 0.1206 | 0.1574 | 0.039* | |
Br1 | 0.61984 (7) | 0.36068 (5) | 0.30855 (5) | 0.0472 (2) | |
Hg1 | 0.7500 | 0.2500 | 0.41417 (2) | 0.04000 (13) | |
O1 | 0.6467 (5) | 0.1124 (5) | 0.1605 (3) | 0.0745 (18) | |
H1' | 0.6956 | 0.1393 | 0.2009 | 0.112* | |
H2' | 0.6796 | 0.0836 | 0.1210 | 0.112* | |
C2 | 0.3365 (6) | 0.1217 (5) | 0.0842 (4) | 0.0387 (16) | |
Br2 | 0.87038 (7) | 0.37639 (5) | 0.50844 (4) | 0.0495 (2) | |
C3 | 0.2084 (6) | 0.1205 (5) | 0.0828 (5) | 0.0444 (17) | |
H3 | 0.1649 | 0.1217 | 0.0311 | 0.053* | |
Br3 | 0.43205 (7) | 0.12828 (5) | −0.01581 (4) | 0.0520 (2) | |
C4 | 0.1448 (7) | 0.1175 (5) | 0.1594 (5) | 0.0510 (19) | |
H4 | 0.0573 | 0.1172 | 0.1598 | 0.061* | |
Br4 | 0.43698 (7) | 0.10954 (6) | 0.33229 (4) | 0.0515 (2) | |
C5 | 0.2098 (6) | 0.1150 (5) | 0.2359 (5) | 0.0455 (17) | |
H5 | 0.1670 | 0.1136 | 0.2878 | 0.055* | |
C6 | 0.3380 (6) | 0.1146 (5) | 0.2337 (4) | 0.0375 (16) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.032 (3) | 0.033 (3) | 0.033 (3) | −0.002 (2) | −0.002 (2) | −0.001 (2) |
Br1 | 0.0459 (4) | 0.0526 (4) | 0.0431 (4) | 0.0068 (3) | −0.0010 (3) | 0.0139 (3) |
Hg1 | 0.0444 (2) | 0.0421 (2) | 0.0335 (2) | −0.00014 (18) | 0.000 | 0.000 |
O1 | 0.040 (3) | 0.139 (6) | 0.044 (3) | −0.007 (3) | 0.000 (2) | −0.001 (3) |
C2 | 0.046 (4) | 0.037 (4) | 0.034 (4) | −0.008 (3) | 0.001 (3) | 0.002 (3) |
Br2 | 0.0470 (4) | 0.0585 (5) | 0.0431 (4) | −0.0088 (3) | −0.0006 (3) | −0.0142 (3) |
C3 | 0.042 (4) | 0.048 (4) | 0.043 (4) | −0.007 (3) | −0.009 (3) | 0.005 (3) |
Br3 | 0.0569 (4) | 0.0650 (5) | 0.0340 (4) | −0.0051 (4) | 0.0045 (3) | 0.0041 (3) |
C4 | 0.041 (4) | 0.058 (5) | 0.055 (5) | 0.000 (3) | −0.001 (4) | −0.005 (4) |
Br4 | 0.0573 (5) | 0.0633 (5) | 0.0338 (4) | −0.0062 (4) | −0.0048 (3) | 0.0008 (3) |
C5 | 0.048 (4) | 0.045 (4) | 0.043 (4) | −0.003 (3) | 0.006 (3) | −0.003 (3) |
C6 | 0.048 (4) | 0.034 (4) | 0.030 (4) | −0.006 (3) | −0.006 (3) | 0.001 (3) |
Geometric parameters (Å, º) top
N1—C6 | 1.351 (7) | C2—C3 | 1.363 (10) |
N1—C2 | 1.331 (7) | C2—Br3 | 1.865 (6) |
N1—H1 | 0.8600 | C3—C4 | 1.375 (9) |
Br1—Hg1 | 2.6215 (7) | C3—H3 | 0.9300 |
Hg1—Br2 | 2.5928 (7) | C4—C5 | 1.379 (9) |
Hg1—Br2i | 2.5928 (7) | C4—H4 | 0.9300 |
Hg1—Br1i | 2.6215 (7) | Br4—C6 | 1.866 (6) |
O1—H1' | 0.8951 | C5—C6 | 1.364 (9) |
O1—H2' | 0.8093 | C5—H5 | 0.9300 |
| | | |
C6—N1—C2 | 121.2 (5) | C4—C3—C2 | 118.6 (6) |
C6—N1—H1 | 119.4 | C4—C3—H3 | 120.7 |
C2—N1—H1 | 119.4 | C2—C3—H3 | 120.7 |
Br2—Hg1—Br2i | 110.82 (3) | C5—C4—C3 | 120.5 (7) |
Br2—Hg1—Br1i | 118.19 (2) | C5—C4—H4 | 119.8 |
Br2i—Hg1—Br1i | 104.00 (3) | C3—C4—H4 | 119.8 |
Br2—Hg1—Br1 | 104.00 (3) | C4—C5—C6 | 118.7 (6) |
Br2i—Hg1—Br1 | 118.19 (2) | C4—C5—H5 | 120.7 |
Br1i—Hg1—Br1 | 102.03 (3) | C6—C5—H5 | 120.7 |
H1'—O1—H2' | 118.8 | N1—C6—C5 | 120.1 (6) |
N1—C2—C3 | 120.9 (6) | N1—C6—Br4 | 116.9 (5) |
N1—C2—Br3 | 117.0 (5) | C5—C6—Br4 | 123.0 (5) |
C3—C2—Br3 | 122.1 (5) | | |
| | | |
C6—N1—C2—C3 | 0.6 (9) | C3—C4—C5—C6 | −0.6 (11) |
C6—N1—C2—Br3 | 179.9 (4) | C2—N1—C6—C5 | −1.7 (9) |
N1—C2—C3—C4 | 0.5 (9) | C2—N1—C6—Br4 | 179.0 (5) |
Br3—C2—C3—C4 | −178.8 (5) | C4—C5—C6—N1 | 1.7 (9) |
C2—C3—C4—C5 | −0.5 (10) | C4—C5—C6—Br4 | −179.1 (5) |
Symmetry code: (i) −x+3/2, −y+1/2, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.86 | 1.78 | 2.634 (7) | 175 |
O1—H1′···Br1i | 0.90 | 2.58 | 3.412 (5) | 154 |
O1—H2′···Br2ii | 0.81 | 2.74 | 3.364 (5) | 136 |
C4—H4···Br1iii | 0.93 | 3.01 | 3.664 (7) | 129 |
C5—H5···Br1iii | 0.93 | 3.09 | 3.699 (7) | 125 |
Symmetry codes: (i) −x+3/2, −y+1/2, z; (ii) x, −y+1/2, z−1/2; (iii) −x+1/2, −y+1/2, z. |
Experimental details
| (I) | (II) | (III) |
Crystal data |
Chemical formula | (C5H4Br2N)2[CuBr4]·2H2O | (C5H4Br2N)2[CdBr4]·2H2O | (C5H4Br2N)2[HgBr4]·2H2O |
Mr | 894.97 | 943.83 | 1032.01 |
Crystal system, space group | Orthorhombic, Pccn | Orthorhombic, Pccn | Orthorhombic, Pccn |
Temperature (K) | 296 | 296 | 296 |
a, b, c (Å) | 10.2861 (7), 13.4443 (9), 15.7523 (11) | 10.6168 (7), 13.5358 (9), 15.6473 (11) | 10.6328 (7), 13.5144 (9), 15.6141 (11) |
V (Å3) | 2178.4 (3) | 2248.6 (3) | 2243.7 (3) |
Z | 4 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 15.68 | 15.19 | 21.11 |
Crystal size (mm) | 0.22 × 0.16 × 0.12 | 0.16 × 0.16 × 0.04 | 0.22 × 0.20 × 0.14 |
|
Data collection |
Diffractometer | Bruker/Siemens SMART APEX diffractometer | Bruker/Siemens SMART APEX diffractometer | Bruker/Siemens SMART APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) | Multi-scan (SADABS; Bruker, 2001) | Numerical (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.130, 0.255 | 0.111, 0.551 | 0.019, 0.051 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19097, 1921, 1426 | 20158, 2034, 1607 | 13744, 2024, 1535 |
Rint | 0.067 | 0.068 | 0.061 |
(sin θ/λ)max (Å−1) | 0.595 | 0.600 | 0.600 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.088, 1.03 | 0.027, 0.064, 1.04 | 0.031, 0.068, 1.03 |
No. of reflections | 1921 | 2034 | 2024 |
No. of parameters | 106 | 105 | 105 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.32, −0.49 | 0.43, −0.39 | 0.94, −0.68 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.86 | 1.74 | 2.602 (6) | 176.9 |
O1—H1'···Br1i | 0.88 | 2.45 | 3.298 (4) | 159.7 |
O1—H2'···Br2ii | 0.89 | 2.59 | 3.271 (4) | 133.9 |
C4—H4···Br1iii | 0.93 | 3.02 | 3.662 (7) | 128.0 |
C5—H5···Br1iii | 0.93 | 3.08 | 3.703 (6) | 125.7 |
Symmetry codes: (i) −x+3/2, −y+1/2, z; (ii) x, −y+1/2, z−1/2; (iii) −x+1/2, −y+1/2, z. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.86 | 1.78 | 2.639 (4) | 173.9 |
O1—H1'···Br1i | 0.91 | 2.59 | 3.425 (3) | 152.2 |
O1—H2'···Br2ii | 0.78 | 2.75 | 3.363 (3) | 136.8 |
C4—H4···Br1iii | 0.93 | 3.00 | 3.658 (5) | 129.3 |
C5—H5···Br1iii | 0.93 | 3.07 | 3.685 (4) | 125.3 |
Symmetry codes: (i) −x+3/2, −y+1/2, z; (ii) x, −y+1/2, z−1/2; (iii) −x+1/2, −y+1/2, z. |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.86 | 1.78 | 2.634 (7) | 174.7 |
O1—H1'···Br1i | 0.90 | 2.58 | 3.412 (5) | 154.2 |
O1—H2'···Br2ii | 0.81 | 2.74 | 3.364 (5) | 135.6 |
C4—H4···Br1iii | 0.93 | 3.01 | 3.664 (7) | 129.1 |
C5—H5···Br1iii | 0.93 | 3.09 | 3.699 (7) | 124.9 |
Symmetry codes: (i) −x+3/2, −y+1/2, z; (ii) x, −y+1/2, z−1/2; (iii) −x+1/2, −y+1/2, z. |
Comparative distances (Å) and angles (°) for halogen bonding in the isomorphous complexes topContacts | (I) | (II) | (III) |
Br2···Br4i | 3.5744 (9) | 3.4418 (7) | 3.4346 (9) |
Br1···Br3iv | 3.5396 (9) | 3.3928 (7) | 3.3956 (10) |
Angles | | | |
Br2···Br4i—C | 172 | 173 | 174 |
Br1···Br3iv—C | 174 | 176 | 177 |
Symmetry codes: (i) −x + 3/2, −y + 1/2, z; (iv) x, 1/2 − y, 1/2 + z. |
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Non-covalent interactions play an important role in the organization of structural units in both natural and artificial systems (Desiraju, 1997). The consequences of such interactions may affect the properties of many materials found and utilized in areas such as biology (Hunter, 1994; Desiraju & Steiner, 1999), crystal engineering (Allen et al., 1997; Dolling et al., 2001) and materials science (Panunto et al., 1987; Robinson et al., 2000). The interactions governing the crystal organization are expected to affect the packing and the specific properties of solids.
Organic–inorganic hybrid compounds are of great interest ro researchers because of their special magnetic (Cui et al., 2000), electronic (Lacroix et al., 1994) and optoelectronic properties (Chakravarthy & Guloy, 1997). The influence of the features of the organic cations on the packing interactions that govern the crystal organization is expected to affect the packing and the specific properties of solids. On the other hand, the results of a series of structure analyses and theoretical calculations (Awwadi et al., 2007, and references therein) show the significance of linear C—Br···Br synthons in influencing the structures of crystalline materials, suggesting their use as potential building blocks in crystal engineering via supramolecular synthesis. This inspired our interest in the role of the C—Br···Br—M synthon in the control of the packing of different metal halide anions such as MBr42− in crystalline lattices. In continuation of our work (Luque et al., 2001; Haddad et al., 2006; Al-Far & Ali, 2007a,b; Ali & Al-Far, 2007) on complexes containing cationic pyridine derivatives with bromo-metal anions, herein we describe the crystallization of three isomorphous compounds containing the 2,6-dibromopyridinium cation (denoted 2,6-dbpH), namely bis(2,6-dibromopyridinium) tetrabromidocuprate(II) dihydrate, (I), bis(2,6-dibromopyridinium) tetrabromidocadmate(II) dihydrate, (II), and bis(2,6-dibromopyridinium) tetrabromidomercurate(II) dihydrate, (III), along with their crystal packing and crystal supramolecularity analysis. Comparison of packing forces as related to metal halide distortions, [MBr4]2− (M = CuII, CdII and HgII), with different electronic configurations, is of interest to us. Attempts to make other isomorphous salts of the above failed. The reaction of two equivalents of 2,6-dibromopyridine with one equivalent of the corresponding MII salt in the presence of excess aqueous HBr gave compounds (I), (II) and (III) in 90%, 84% and 82% yield, respectively. The introduction of bromo groups at the 2- and 6- positions increases the basicity at the ring N atom (Al-Far & Ali, 2007a). Therefore, the resulting protonated 2,6-dibromopyridine was expected to create many important centres of interaction with the bromo-metal anions, e.g. N—H···Br, (π)C—H···Br and possibly aryl···aryl stacking.
The title compounds are isomorphous and crystallize in the orthorhombic space group Pccn. The asymmetric unit consists of one cation, one half anion, which lies across a crystallographic C2 axis, and one water molecule (Fig. 1). The anions all have a significantly distorted tetrahedral geometry. The unique M—Br distances are 2.3770 (8) and 2.3797 (8), 2.5803 (5) and 2.5947 (5), and 2.5928 (7) and 2.6215 (7) Å for (I), (II) and (III), respectively. The Br—Cu—Br angles are in the ranges 99.24 (2)–128.09 (2), 102.90 (3)–117.970 (16) and 102.03 (3)–118.19 (2)°, [for (I), (II) and (III)?], respectively. These distances and angles are in accordance with previously reported values for corresponding [MBr4]2−-containing complexes (Coffey et al., 2000; Al-Far & Ali, 2008; Ali et al., 2006). The bond distances and angles in the planar cations in each structure are in the normal range (Allen et al., 1987).
The MBr42– anions and water molecules, that act as bridging units between the anions, form cooperative infinite chains parallel to the crystallographic c axis (Fig. 2). The anions···water chains are held up through M—Br···H—O—H···Br—M intermolecular interactions (Fig. 2, Tables 1, 2 and 3). These chains are further connected to the cations, leading to 'ribbons' (Fig. 2), the connecting unit also being H2O molecules via short (π)N—H···OH2 intermolecular hydrogen bonds. Within the ribbons, Br···Br halogen bonding plays a significant and complementary role in bringing all these interacting moieties together (Fig. 2). This type of interaction results from C—Br···Br—M contacts in which the Br···Br distances (Table 4) are in the range 3.3928 (7)–3.5744 (9) Å which is significantly less than the sum of the van der Waals radii (3.7 Å). It is worth mentioning that halide···halide interactions of the type M—Br···Br—M are absent since the shortest contact in the series [4.3394 (10) Å in (III)] is much larger than the sum of the commonly accepted van der Waals radii.
The discussed ribbons, in turn, interact with neighbouring ones via aryl···aryl face-to-face interactions (π···π stacking) between almost parallel oppositely oriented pyridinium cations, giving rise to layers parallel to the ac plane (Fig. 3a). The distances between the centroids (Cg) of adjacent rings are 3.53 (3), 3.601 (3) and 3.59 (8) Å for Cg (x, y, z)···Cg (1/2 − x, 1/2 − y, z) in (I), (II) and (III), respectively. The angles between the centroid ···centroid line and the perpendicular distance line between planes are calculated to be 2.3, 7.7 and 7.6° in (I), (II) and (III), respectively.
Intermolecular interactions result in two distinguishable regions in the lattice (Fig.3b). One is hydrophobic, which represents the cation layers that interact via offset face-to-face π···π stacking interactions. The other is the hydrophilic region, which represents the zone where C—Br···Br—M, H—O—H···Br—M and N—H···OH2 interactions are assembled.