Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807043048/bg2095sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807043048/bg2095Isup2.hkl |
CCDC reference: 667269
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.004 Å
- R factor = 0.044
- wR factor = 0.127
- Data-to-parameter ratio = 10.1
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.67 Ratio
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.47 From the CIF: _reflns_number_total 2298 Count of symmetry unique reflns 2303 Completeness (_total/calc) 99.78% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT791_ALERT_1_G Confirm the Absolute Configuration of C5 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C7 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C8 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C9 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C10 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C13 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C14 = . R
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 10 ALERT level G = General alerts; check 9 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For related literature, see: Allen et al. (1987); Kim et al. (1992); Sun et al. (2001).
The dried and crushed leaves of Isodon japonica var. glaucocalyx (10 kg, collected from Hui Prefecture, Henan Province, China) were extracted four times with Me2CO/H2O (7:3, v/v) at room temperature over a period of seven days. The extract was filtered and the solvent was removed under reduced pressure. The residue was then partitioned between water and AcOEt. After removal of the solvent, the AcOEt residue was separated by repeated silica gel (200–300 mesh) column chromatography and recrystallization from CHCl3/Me2CO(10:1), giving 900 mg of compound (I) (m.p. 493–495 K. Optical rotation: [α]D20 -183 ° (c 1/2, CHCl3). Crystals suitable for X-ray analysis were obtained by slow evaporation of a solution of the compound (I) in Me2CO at room temperature.
All H atoms were included in calculated positions and refined as riding atoms, with C—H = 0.96 Å (CH3), 0.93 and 0.97 Å (CH2), and 0.98 Å (CH), and with Uiso(H) = 1.2 Ueq(C). In the absence of significant anomalous scattering effects, Friedel pairs were merged. The choice of enantiomer was based on comparison of the optical rotation with that of related compounds with known stereochemistry.
The title compound(I), is a natural ent-kaurane diterpenoid isolated from the medicinal plant Isodon japonica var. glaucocalyx. This plant has been used as antibacterial, inflammation-diminishing and stomachic agents. The compound (I) has been isolated previously from the same source and its structure was postulated from spectroscopic methods (Kim et al.,1992). In order to further confirm the structure and conformation of (I), a crystal structure analysis has been undertaken.
The X-ray crystallographic analysis confirms the previously proposed molecular structure of (I). Fig.1 shows its conformation: two carbonyl groups locate at C3 and C15, while two hydrogen groups adopt α,β-orientations at C7 and C14 respectively. There is a trans junction between ring A (C1—C5/C10) and ring B (C5—C10); cis junctions are present between ring B and ring C (C8/C9/C11—C14), and ring C and ring D (C8/C13—C16).
Bond lengths and angles are within expected ranges (Allen et al., 1987), with average values (Å): Csp3—Csp3 = 1.541 (3), Csp3—Csp2 = 1.517 (4), Csp2—Csp2 (in C═C—C═O) = 1.500 (4), C═C = 1.326 (4), C═O = 1.209 (3), Csp3—O = 1.432 (3). Rings B and C have chair conformations, with average torsion angles of 54.6 (2) ° and 55.8 °, respectively. Ring A adopts a twist-boat conformation and ring D shows an evenlope conformation; the flap atom, C14, lies 0.69 (1) Å from the plane defined by atoms C8, C15, C16 and C13.
The molecule contains seven chiral centers at C5(R), C7(R), C8(R), C9(S), C10(R), C13(R) and C14(R). Although the absolute configuration could not be reliably determined from anomalous dispersion effects, the negative optical rotation showed this compound to be in the ent- kaurane series as reported in genus Isodon (Sun et al.,2001), rather than in the kaurane series, and so allowed us to assign the correct configuration. In the crystal structure the molecules are linked by O—H···O hydrogen bonds, to form double chains running along the shortest cell axis, a. (Table 1 and Fig. 2).
For related literature, see: Allen et al. (1987); Kim et al. (1992); Sun et al. (2001).
Data collection: RAPID-AUTO (Rigaku, 2004); cell refinement: RAPID-AUTO (Rigaku, 2004); data reduction: RAPID-AUTO (Rigaku, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Siemens, 1995); software used to prepare material for publication: SHELXTL (Siemens, 1995).
C20H28O4 | Dx = 1.270 Mg m−3 |
Mr = 332.42 | Melting point: 493 K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 13908 reflections |
a = 6.6349 (19) Å | θ = 3.1–27.5° |
b = 10.659 (4) Å | µ = 0.09 mm−1 |
c = 24.586 (7) Å | T = 293 K |
V = 1738.8 (10) Å3 | Block, colourless |
Z = 4 | 0.41 × 0.20 × 0.18 mm |
F(000) = 720 |
Rigaku R-AXIS RAPID diffractometer | 1946 reflections with I > 2σ(I) |
Radiation source: Rotating Anode | Rint = 0.056 |
Graphite monochromator | θmax = 27.5°, θmin = 3.1° |
ω scans | h = −8→8 |
17081 measured reflections | k = −13→13 |
2298 independent reflections | l = −31→31 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0826P)2 + 0.1982P] where P = (Fo2 + 2Fc2)/3 |
2298 reflections | (Δ/σ)max = 0.001 |
228 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C20H28O4 | V = 1738.8 (10) Å3 |
Mr = 332.42 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.6349 (19) Å | µ = 0.09 mm−1 |
b = 10.659 (4) Å | T = 293 K |
c = 24.586 (7) Å | 0.41 × 0.20 × 0.18 mm |
Rigaku R-AXIS RAPID diffractometer | 1946 reflections with I > 2σ(I) |
17081 measured reflections | Rint = 0.056 |
2298 independent reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.127 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.30 e Å−3 |
2298 reflections | Δρmin = −0.16 e Å−3 |
228 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.6082 (4) | 0.8582 (2) | 0.68057 (9) | 0.0771 (8) | |
O2 | 0.1990 (3) | 0.39429 (17) | 0.49532 (6) | 0.0379 (4) | |
O3 | −0.1915 (3) | 0.32770 (18) | 0.57763 (8) | 0.0441 (5) | |
O4 | 0.3435 (3) | 0.19761 (17) | 0.54776 (8) | 0.0439 (5) | |
C1 | 0.2273 (5) | 0.6432 (3) | 0.70138 (10) | 0.0479 (7) | |
H1A | 0.0821 | 0.6336 | 0.7034 | 0.057* | |
H1B | 0.2830 | 0.6163 | 0.7359 | 0.057* | |
C2 | 0.2764 (5) | 0.7819 (3) | 0.69317 (12) | 0.0563 (8) | |
H2A | 0.1662 | 0.8217 | 0.6738 | 0.068* | |
H2B | 0.2884 | 0.8221 | 0.7284 | 0.068* | |
C3 | 0.4674 (5) | 0.8012 (2) | 0.66199 (10) | 0.0477 (7) | |
C4 | 0.4690 (5) | 0.7467 (2) | 0.60447 (9) | 0.0406 (6) | |
C5 | 0.3202 (4) | 0.6329 (2) | 0.60206 (8) | 0.0309 (5) | |
H5 | 0.1860 | 0.6700 | 0.5977 | 0.037* | |
C6 | 0.3501 (4) | 0.5498 (2) | 0.55213 (8) | 0.0311 (5) | |
H6A | 0.3604 | 0.6019 | 0.5199 | 0.037* | |
H6B | 0.4748 | 0.5030 | 0.5558 | 0.037* | |
C7 | 0.1754 (3) | 0.4593 (2) | 0.54579 (8) | 0.0295 (5) | |
H7 | 0.0501 | 0.5078 | 0.5443 | 0.035* | |
C8 | 0.1644 (3) | 0.3699 (2) | 0.59436 (8) | 0.0257 (4) | |
C9 | 0.1505 (3) | 0.4486 (2) | 0.64833 (8) | 0.0302 (5) | |
H9 | 0.0210 | 0.4924 | 0.6457 | 0.036* | |
C10 | 0.3093 (3) | 0.5555 (2) | 0.65574 (8) | 0.0300 (5) | |
C11 | 0.1273 (4) | 0.3612 (3) | 0.69854 (10) | 0.0429 (6) | |
H11A | 0.1696 | 0.4070 | 0.7307 | 0.052* | |
H11B | −0.0144 | 0.3412 | 0.7029 | 0.052* | |
C12 | 0.2459 (5) | 0.2384 (3) | 0.69599 (10) | 0.0477 (7) | |
H12A | 0.1948 | 0.1812 | 0.7234 | 0.057* | |
H12B | 0.3865 | 0.2551 | 0.7041 | 0.057* | |
C13 | 0.2304 (4) | 0.1762 (2) | 0.63987 (11) | 0.0407 (6) | |
H13 | 0.2960 | 0.0938 | 0.6395 | 0.049* | |
C14 | 0.3249 (3) | 0.2652 (2) | 0.59796 (9) | 0.0322 (5) | |
H14 | 0.4551 | 0.2977 | 0.6104 | 0.039* | |
C15 | −0.0298 (3) | 0.2914 (2) | 0.59443 (9) | 0.0316 (5) | |
C16 | 0.0144 (4) | 0.1678 (3) | 0.62099 (13) | 0.0478 (7) | |
C17 | −0.1289 (6) | 0.0875 (3) | 0.63508 (14) | 0.0688 (10) | |
H17A | −0.2634 | 0.1069 | 0.6286 | 0.083* | |
H17B | −0.0949 | 0.0117 | 0.6515 | 0.083* | |
C18 | 0.3899 (7) | 0.8516 (3) | 0.56763 (12) | 0.0642 (10) | |
H18A | 0.2557 | 0.8739 | 0.5785 | 0.077* | |
H18B | 0.3883 | 0.8230 | 0.5306 | 0.077* | |
H18C | 0.4761 | 0.9235 | 0.5706 | 0.077* | |
C19 | 0.6851 (5) | 0.7164 (3) | 0.58732 (14) | 0.0623 (9) | |
H19A | 0.6878 | 0.6962 | 0.5493 | 0.075* | |
H19B | 0.7335 | 0.6461 | 0.6079 | 0.075* | |
H19C | 0.7697 | 0.7879 | 0.5940 | 0.075* | |
C20 | 0.5169 (4) | 0.5082 (2) | 0.67412 (11) | 0.0414 (6) | |
H20A | 0.6002 | 0.5784 | 0.6837 | 0.050* | |
H20B | 0.5791 | 0.4624 | 0.6450 | 0.050* | |
H20C | 0.5012 | 0.4543 | 0.7051 | 0.050* | |
H2O | 0.071 (5) | 0.370 (3) | 0.4827 (12) | 0.049 (8)* | |
H4O | 0.291 (6) | 0.244 (4) | 0.5241 (14) | 0.076 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.104 (2) | 0.0781 (16) | 0.0495 (11) | −0.0581 (16) | −0.0082 (12) | −0.0065 (11) |
O2 | 0.0415 (10) | 0.0446 (9) | 0.0275 (7) | −0.0064 (8) | 0.0001 (7) | −0.0110 (7) |
O3 | 0.0261 (8) | 0.0535 (11) | 0.0527 (10) | −0.0042 (9) | −0.0007 (8) | −0.0091 (9) |
O4 | 0.0473 (11) | 0.0401 (10) | 0.0443 (10) | 0.0112 (9) | 0.0062 (9) | −0.0119 (8) |
C1 | 0.0565 (17) | 0.0494 (15) | 0.0376 (12) | −0.0154 (13) | 0.0139 (13) | −0.0167 (12) |
C2 | 0.076 (2) | 0.0440 (15) | 0.0485 (15) | −0.0072 (15) | 0.0103 (15) | −0.0207 (13) |
C3 | 0.0726 (19) | 0.0325 (13) | 0.0379 (13) | −0.0175 (14) | −0.0048 (13) | −0.0050 (10) |
C4 | 0.0582 (16) | 0.0316 (12) | 0.0321 (11) | −0.0162 (13) | −0.0016 (11) | −0.0012 (9) |
C5 | 0.0351 (12) | 0.0291 (10) | 0.0284 (10) | −0.0040 (10) | −0.0003 (9) | −0.0034 (9) |
C6 | 0.0387 (12) | 0.0303 (10) | 0.0243 (9) | −0.0089 (10) | 0.0034 (9) | 0.0009 (9) |
C7 | 0.0296 (10) | 0.0325 (11) | 0.0265 (9) | −0.0017 (10) | −0.0005 (9) | −0.0047 (9) |
C8 | 0.0229 (10) | 0.0284 (10) | 0.0260 (9) | −0.0021 (9) | 0.0017 (8) | −0.0043 (8) |
C9 | 0.0289 (11) | 0.0328 (11) | 0.0289 (10) | −0.0029 (10) | 0.0065 (9) | −0.0049 (9) |
C10 | 0.0329 (11) | 0.0321 (11) | 0.0250 (9) | −0.0067 (10) | 0.0023 (9) | −0.0051 (9) |
C11 | 0.0488 (14) | 0.0479 (14) | 0.0321 (11) | −0.0142 (13) | 0.0120 (11) | 0.0004 (11) |
C12 | 0.0571 (17) | 0.0456 (14) | 0.0406 (13) | −0.0095 (13) | 0.0029 (13) | 0.0152 (12) |
C13 | 0.0417 (13) | 0.0283 (11) | 0.0520 (14) | −0.0016 (11) | 0.0021 (12) | 0.0049 (10) |
C14 | 0.0269 (11) | 0.0339 (12) | 0.0357 (11) | 0.0007 (10) | 0.0021 (9) | −0.0062 (9) |
C15 | 0.0251 (11) | 0.0360 (12) | 0.0337 (10) | −0.0052 (10) | 0.0041 (9) | −0.0094 (10) |
C16 | 0.0392 (14) | 0.0375 (13) | 0.0669 (17) | −0.0096 (12) | 0.0030 (13) | 0.0031 (13) |
C17 | 0.065 (2) | 0.0606 (19) | 0.081 (2) | −0.0317 (18) | −0.0093 (18) | 0.0210 (18) |
C18 | 0.107 (3) | 0.0366 (14) | 0.0493 (16) | −0.0186 (18) | −0.0143 (18) | 0.0071 (13) |
C19 | 0.0580 (18) | 0.068 (2) | 0.0604 (17) | −0.0345 (17) | 0.0166 (15) | −0.0077 (16) |
C20 | 0.0380 (13) | 0.0431 (14) | 0.0432 (13) | −0.0094 (12) | −0.0094 (11) | 0.0064 (11) |
O1—C3 | 1.205 (3) | C9—C11 | 1.554 (3) |
O2—C7 | 1.430 (2) | C9—C10 | 1.562 (3) |
O2—H2O | 0.94 (3) | C9—H9 | 0.9800 |
O3—C15 | 1.213 (3) | C10—C20 | 1.535 (3) |
O4—C14 | 1.434 (3) | C11—C12 | 1.529 (4) |
O4—H4O | 0.84 (4) | C11—H11A | 0.9700 |
C1—C2 | 1.527 (4) | C11—H11B | 0.9700 |
C1—C10 | 1.558 (3) | C12—C13 | 1.534 (4) |
C1—H1A | 0.9700 | C12—H12A | 0.9700 |
C1—H1B | 0.9700 | C12—H12B | 0.9700 |
C2—C3 | 1.495 (4) | C13—C16 | 1.509 (4) |
C2—H2A | 0.9700 | C13—C14 | 1.534 (3) |
C2—H2B | 0.9700 | C13—H13 | 0.9800 |
C3—C4 | 1.529 (3) | C14—H14 | 0.9800 |
C4—C19 | 1.529 (4) | C15—C16 | 1.500 (4) |
C4—C18 | 1.531 (4) | C16—C17 | 1.325 (4) |
C4—C5 | 1.566 (3) | C17—H17A | 0.9300 |
C5—C6 | 1.527 (3) | C17—H17B | 0.9300 |
C5—C10 | 1.558 (3) | C18—H18A | 0.9600 |
C5—H5 | 0.9800 | C18—H18B | 0.9600 |
C6—C7 | 1.516 (3) | C18—H18C | 0.9600 |
C6—H6A | 0.9700 | C19—H19A | 0.9600 |
C6—H6B | 0.9700 | C19—H19B | 0.9600 |
C7—C8 | 1.529 (3) | C19—H19C | 0.9600 |
C7—H7 | 0.9800 | C20—H20A | 0.9600 |
C8—C15 | 1.537 (3) | C20—H20B | 0.9600 |
C8—C14 | 1.545 (3) | C20—H20C | 0.9600 |
C8—C9 | 1.572 (3) | ||
C7—O2—H2O | 108.7 (17) | C5—C10—C1 | 107.96 (19) |
C14—O4—H4O | 105 (3) | C20—C10—C9 | 113.58 (19) |
C2—C1—C10 | 114.3 (2) | C5—C10—C9 | 108.58 (17) |
C2—C1—H1A | 108.7 | C1—C10—C9 | 106.63 (18) |
C10—C1—H1A | 108.7 | C12—C11—C9 | 115.4 (2) |
C2—C1—H1B | 108.7 | C12—C11—H11A | 108.4 |
C10—C1—H1B | 108.7 | C9—C11—H11A | 108.4 |
H1A—C1—H1B | 107.6 | C12—C11—H11B | 108.4 |
C3—C2—C1 | 112.5 (2) | C9—C11—H11B | 108.4 |
C3—C2—H2A | 109.1 | H11A—C11—H11B | 107.5 |
C1—C2—H2A | 109.1 | C11—C12—C13 | 111.9 (2) |
C3—C2—H2B | 109.1 | C11—C12—H12A | 109.2 |
C1—C2—H2B | 109.1 | C13—C12—H12A | 109.2 |
H2A—C2—H2B | 107.8 | C11—C12—H12B | 109.2 |
O1—C3—C2 | 122.2 (2) | C13—C12—H12B | 109.2 |
O1—C3—C4 | 122.5 (3) | H12A—C12—H12B | 107.9 |
C2—C3—C4 | 115.3 (2) | C16—C13—C12 | 111.5 (2) |
C3—C4—C19 | 110.0 (2) | C16—C13—C14 | 102.6 (2) |
C3—C4—C18 | 105.5 (2) | C12—C13—C14 | 108.0 (2) |
C19—C4—C18 | 108.2 (3) | C16—C13—H13 | 111.5 |
C3—C4—C5 | 108.96 (19) | C12—C13—H13 | 111.5 |
C19—C4—C5 | 114.7 (2) | C14—C13—H13 | 111.5 |
C18—C4—C5 | 109.1 (2) | O4—C14—C13 | 107.62 (19) |
C6—C5—C10 | 112.34 (18) | O4—C14—C8 | 111.89 (18) |
C6—C5—C4 | 113.44 (19) | C13—C14—C8 | 101.75 (18) |
C10—C5—C4 | 114.07 (17) | O4—C14—H14 | 111.7 |
C6—C5—H5 | 105.3 | C13—C14—H14 | 111.7 |
C10—C5—H5 | 105.3 | C8—C14—H14 | 111.7 |
C4—C5—H5 | 105.3 | O3—C15—C16 | 127.0 (2) |
C7—C6—C5 | 110.63 (18) | O3—C15—C8 | 124.6 (2) |
C7—C6—H6A | 109.5 | C16—C15—C8 | 108.4 (2) |
C5—C6—H6A | 109.5 | C17—C16—C15 | 122.8 (3) |
C7—C6—H6B | 109.5 | C17—C16—C13 | 129.7 (3) |
C5—C6—H6B | 109.5 | C15—C16—C13 | 105.5 (2) |
H6A—C6—H6B | 108.1 | C16—C17—H17A | 120.0 |
O2—C7—C6 | 108.30 (18) | C16—C17—H17B | 120.0 |
O2—C7—C8 | 112.40 (18) | H17A—C17—H17B | 120.0 |
C6—C7—C8 | 110.64 (17) | C4—C18—H18A | 109.5 |
O2—C7—H7 | 108.5 | C4—C18—H18B | 109.5 |
C6—C7—H7 | 108.5 | H18A—C18—H18B | 109.5 |
C8—C7—H7 | 108.5 | C4—C18—H18C | 109.5 |
C7—C8—C15 | 112.33 (18) | H18A—C18—H18C | 109.5 |
C7—C8—C14 | 117.52 (17) | H18B—C18—H18C | 109.5 |
C15—C8—C14 | 100.63 (18) | C4—C19—H19A | 109.5 |
C7—C8—C9 | 109.23 (17) | C4—C19—H19B | 109.5 |
C15—C8—C9 | 103.89 (16) | H19A—C19—H19B | 109.5 |
C14—C8—C9 | 112.18 (17) | C4—C19—H19C | 109.5 |
C11—C9—C10 | 114.28 (19) | H19A—C19—H19C | 109.5 |
C11—C9—C8 | 110.87 (18) | H19B—C19—H19C | 109.5 |
C10—C9—C8 | 116.61 (17) | C10—C20—H20A | 109.5 |
C11—C9—H9 | 104.5 | C10—C20—H20B | 109.5 |
C10—C9—H9 | 104.5 | H20A—C20—H20B | 109.5 |
C8—C9—H9 | 104.5 | C10—C20—H20C | 109.5 |
C20—C10—C5 | 112.43 (19) | H20A—C20—H20C | 109.5 |
C20—C10—C1 | 107.4 (2) | H20B—C20—H20C | 109.5 |
C10—C1—C2—C3 | −28.6 (4) | C2—C1—C10—C5 | −28.6 (3) |
C1—C2—C3—O1 | −120.8 (3) | C2—C1—C10—C9 | −145.1 (3) |
C1—C2—C3—C4 | 60.8 (4) | C11—C9—C10—C20 | 52.7 (3) |
O1—C3—C4—C19 | 28.0 (4) | C8—C9—C10—C20 | −78.8 (2) |
C2—C3—C4—C19 | −153.5 (3) | C11—C9—C10—C5 | 178.57 (19) |
O1—C3—C4—C18 | −88.5 (4) | C8—C9—C10—C5 | 47.0 (3) |
C2—C3—C4—C18 | 89.9 (3) | C11—C9—C10—C1 | −65.3 (3) |
O1—C3—C4—C5 | 154.5 (3) | C8—C9—C10—C1 | 163.1 (2) |
C2—C3—C4—C5 | −27.1 (3) | C10—C9—C11—C12 | −97.4 (3) |
C3—C4—C5—C6 | −164.4 (2) | C8—C9—C11—C12 | 36.9 (3) |
C19—C4—C5—C6 | −40.7 (3) | C9—C11—C12—C13 | −43.5 (3) |
C18—C4—C5—C6 | 80.8 (3) | C11—C12—C13—C16 | −49.4 (3) |
C3—C4—C5—C10 | −34.1 (3) | C11—C12—C13—C14 | 62.6 (3) |
C19—C4—C5—C10 | 89.7 (3) | C16—C13—C14—O4 | −72.6 (2) |
C18—C4—C5—C10 | −148.8 (2) | C12—C13—C14—O4 | 169.6 (2) |
C10—C5—C6—C7 | 61.0 (2) | C16—C13—C14—C8 | 45.2 (2) |
C4—C5—C6—C7 | −167.78 (19) | C12—C13—C14—C8 | −72.7 (2) |
C5—C6—C7—O2 | 173.36 (18) | C7—C8—C14—O4 | −49.4 (3) |
C5—C6—C7—C8 | −63.0 (2) | C15—C8—C14—O4 | 72.9 (2) |
O2—C7—C8—C15 | −68.3 (2) | C9—C8—C14—O4 | −177.24 (17) |
C6—C7—C8—C15 | 170.46 (18) | C7—C8—C14—C13 | −164.03 (19) |
O2—C7—C8—C14 | 47.7 (3) | C15—C8—C14—C13 | −41.8 (2) |
C6—C7—C8—C14 | −73.5 (2) | C9—C8—C14—C13 | 68.1 (2) |
O2—C7—C8—C9 | 176.95 (18) | C7—C8—C15—O3 | −33.0 (3) |
C6—C7—C8—C9 | 55.7 (2) | C14—C8—C15—O3 | −158.9 (2) |
C7—C8—C9—C11 | 176.91 (19) | C9—C8—C15—O3 | 84.9 (3) |
C15—C8—C9—C11 | 56.9 (2) | C7—C8—C15—C16 | 149.7 (2) |
C14—C8—C9—C11 | −51.0 (2) | C14—C8—C15—C16 | 23.9 (2) |
C7—C8—C9—C10 | −50.0 (2) | C9—C8—C15—C16 | −92.3 (2) |
C15—C8—C9—C10 | −170.04 (19) | O3—C15—C16—C17 | −8.3 (5) |
C14—C8—C9—C10 | 82.1 (2) | C8—C15—C16—C17 | 168.9 (3) |
C6—C5—C10—C20 | 75.4 (2) | O3—C15—C16—C13 | −173.6 (2) |
C4—C5—C10—C20 | −55.5 (3) | C8—C15—C16—C13 | 3.6 (3) |
C6—C5—C10—C1 | −166.4 (2) | C12—C13—C16—C17 | −78.6 (4) |
C4—C5—C10—C1 | 62.8 (3) | C14—C13—C16—C17 | 166.1 (3) |
C6—C5—C10—C9 | −51.1 (3) | C12—C13—C16—C15 | 85.3 (3) |
C4—C5—C10—C9 | 177.98 (19) | C14—C13—C16—C15 | −30.0 (3) |
C2—C1—C10—C20 | 92.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O4i | 0.94 (3) | 1.83 (3) | 2.765 (3) | 171 (3) |
O4—H4O···O2 | 0.84 (4) | 1.85 (4) | 2.641 (3) | 156 (4) |
Symmetry code: (i) x−1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C20H28O4 |
Mr | 332.42 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 6.6349 (19), 10.659 (4), 24.586 (7) |
V (Å3) | 1738.8 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.41 × 0.20 × 0.18 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17081, 2298, 1946 |
Rint | 0.056 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.127, 1.00 |
No. of reflections | 2298 |
No. of parameters | 228 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.30, −0.16 |
Computer programs: RAPID-AUTO (Rigaku, 2004), SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), SHELXTL (Siemens, 1995).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O4i | 0.94 (3) | 1.83 (3) | 2.765 (3) | 171 (3) |
O4—H4O···O2 | 0.84 (4) | 1.85 (4) | 2.641 (3) | 156 (4) |
Symmetry code: (i) x−1/2, −y+1/2, −z+1. |
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The title compound(I), is a natural ent-kaurane diterpenoid isolated from the medicinal plant Isodon japonica var. glaucocalyx. This plant has been used as antibacterial, inflammation-diminishing and stomachic agents. The compound (I) has been isolated previously from the same source and its structure was postulated from spectroscopic methods (Kim et al.,1992). In order to further confirm the structure and conformation of (I), a crystal structure analysis has been undertaken.
The X-ray crystallographic analysis confirms the previously proposed molecular structure of (I). Fig.1 shows its conformation: two carbonyl groups locate at C3 and C15, while two hydrogen groups adopt α,β-orientations at C7 and C14 respectively. There is a trans junction between ring A (C1—C5/C10) and ring B (C5—C10); cis junctions are present between ring B and ring C (C8/C9/C11—C14), and ring C and ring D (C8/C13—C16).
Bond lengths and angles are within expected ranges (Allen et al., 1987), with average values (Å): Csp3—Csp3 = 1.541 (3), Csp3—Csp2 = 1.517 (4), Csp2—Csp2 (in C═C—C═O) = 1.500 (4), C═C = 1.326 (4), C═O = 1.209 (3), Csp3—O = 1.432 (3). Rings B and C have chair conformations, with average torsion angles of 54.6 (2) ° and 55.8 °, respectively. Ring A adopts a twist-boat conformation and ring D shows an evenlope conformation; the flap atom, C14, lies 0.69 (1) Å from the plane defined by atoms C8, C15, C16 and C13.
The molecule contains seven chiral centers at C5(R), C7(R), C8(R), C9(S), C10(R), C13(R) and C14(R). Although the absolute configuration could not be reliably determined from anomalous dispersion effects, the negative optical rotation showed this compound to be in the ent- kaurane series as reported in genus Isodon (Sun et al.,2001), rather than in the kaurane series, and so allowed us to assign the correct configuration. In the crystal structure the molecules are linked by O—H···O hydrogen bonds, to form double chains running along the shortest cell axis, a. (Table 1 and Fig. 2).