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The structure of 4-methylpyridine-N-oxide has been determined at 250, 100 and 10 K by combined synchrotron (C6H7NO) and neutron (C6D7NO) powder diffraction experiments. At 250 K the space group is I41/amd and the tetragonal unit cell [a = b = 7.941 (2), c = 19.600 (5) Å] contains eight equivalent molecules. At 100 K the structure is orthorhombic, with space group Fddd, a = 12.138 (2), b = 10.237 (2) and c = 19.568 (3) Å. The 16 equivalent molecules are rotated by about 8° around the c axis with respect to positions at high temperature. At 10 K the best structural model corresponds to a tetragonal unit cell with the space group P41, a = b = 15.410 (2) Å and c = 19.680 (3) Å. The 32 molecules (eight molecules in the asymmetric unit) show complex reorientations around the three cell axes. Whereas at 250 and 100 K the deuterated methyl groups are largely disordered, at 10 K they are ordered in-phase along infinite chains parallel to a and b. Face-to-face methyl groups along c are in an eclipsed configuration. The structure at 10 K suggests that the manifold of rotational tunnelling transitions could be due to inequivalent lattice sites for crystallographically independent methyl groups.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108768106011608/av5052sup1.cif
Contains datablocks global, 250K, 100K, 10K

rtv

Rietveld powder data file (CIF format) https://doi.org/10.1107/S0108768106011608/av5052250Ksup2.rtv
Contains datablock 250K

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106011608/av5052250Ksup3.hkl
Contains datablock 250K

rtv

Rietveld powder data file (CIF format) https://doi.org/10.1107/S0108768106011608/av5052100Ksup4.rtv
Contains datablock 100K

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106011608/av5052100Ksup5.hkl
Contains datablock 100K

rtv

Rietveld powder data file (CIF format) https://doi.org/10.1107/S0108768106011608/av505210Ksup6.rtv
Contains datablock 10K

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106011608/av505210Ksup7.hkl
Contains datablock 10K

CCDC references: 618454; 618455; 618456

Experimental top

Fully deuterated sample was prepared by repeated exchanges with heavy water

Computing details top

For all compounds, program(s) used to refine structure: FULLPROF; molecular graphics: DIAMOND.

Figures top
[Figure 1]
[Figure 2]
[Figure 3]
[Figure 4]
[Figure 5]
[Figure 6]
[Figure 7]
Figure 1 Neutron diffraction patterns of powdered 4-methylpyridine-N-oxide at 250 K, 100 K and 10 K. Inset: schematic view of the orientational disordering of the methyl group at 250 K, modelled with anisotropic ellipsoids. Figure 2 [001] projection and unit cell of the structure of 4-methylpyridine-N-oxide at 250 K and 100 K. For the sake of clarity, the D atoms are omitted. Figure 3 Isodensity contours (Fourier method) in the rotational plane (001) of the methyl group at 250, 100, and 10 K. Superscripts (s) and (r) refer to standard and rigid-body group refinements, respectively. Figure 4 Rietveld refinement of the neutron diffraction pattern of fully deuterated 4-methylpyridine-N-oxide at 10 K. Experimental data (open circles). Calculated (continuous line). Allowed Bragg reflections (vertical marks). The difference between the observed and calculated profiles is displayed at the bottom. Inset: schematic view of the molecule and thermal ellipsoids at 10 K. Figure 5 [001] projection of the unit cell for fully deuterated 4-methylpyridine-N-oxide at 10 K. The D atoms are omitted. M1 to M8 refer to the 8 molecules of the asymmetric unit defined in Table 5. Figure 6 Top: view along a of the infinite chains of CD3 rotors parallel to b (zigzag lines) or parallel to a (circles). The unit cell is outlined. Bottom: view along c of two chains. Numbers in parentheses refer to the distances between methyl groups in Table 5. Thick and thin dots correspond to short and long distances, respectively. Dotted circles emphasize possible coupling with rotors in the next layer (z = 0.7) above, while dotted squares indicate possible coupling with rotors in the next layer (z = 0.3) below.
(250K) 4-methylpyridine-N-oxide top
Crystal data top
C5D4NO·(CD3)V = 1236.03 (6) Å3
Mr = 116Z = 8
Tetragonal, I41/amdMelting point: 463 K
Hall symbol: -I 4bd 2Constant Wavelength neutron radiation, λ = 1.225300 Å
a = 7.9411 (2) ÅT = 250 K
c = 19.6002 (5) Åcylinder, ? × ? × ? mm
Data collection top
Home made powder
diffractometer
Specimen mounting: vanadium
Radiation source: nuclear reactor, 3T22θmin = 0.026°, 2θmax = 125.424°, 2θstep = 0.050°
Refinement top
Rp = 2.045Profile function: pseudo-voigt
Rwp = 2.50649 parameters
Rexp = 1.5010 restraints
RBragg = 4.610
χ2 = 2.789Background function: FullProf Background function number
2279 data points
Crystal data top
C5D4NO·(CD3)V = 1236.03 (6) Å3
Mr = 116Z = 8
Tetragonal, I41/amdConstant Wavelength neutron radiation, λ = 1.225300 Å
a = 7.9411 (2) ÅT = 250 K
c = 19.6002 (5) Åcylinder, ? × ? × ? mm
Data collection top
Home made powder
diffractometer
2θmin = 0.026°, 2θmax = 125.424°, 2θstep = 0.050°
Specimen mounting: vanadium
Refinement top
Rp = 2.045χ2 = 2.789
Rwp = 2.5062279 data points
Rexp = 1.50149 parameters
RBragg = 4.6100 restraints
Special details top

Geometry. Rigid body group non refined

Refinement. Two rigid-body groups (C5D7NO and CD3 methyl group) with TLS

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
PI10.000000.250000.563390.00000
PI20.000000.250000.494680.00000
PI30.000000.102540.596870.000000.50000
PI40.000000.397460.596870.000000.50000
PI50.000000.102060.668360.000000.50000
PI60.000000.397940.668360.000000.50000
PI70.000000.250000.705840.00000
PI80.000000.250000.781300.00000
PI90.000000.009440.566560.000000.50000
PI100.000000.509440.566560.000000.50000
PI110.000000.020990.693130.000000.50000
PI120.000000.520990.693130.000000.50000
MI20.000000.140480.799500.000000.50000
MI30.094850.304760.799500.000000.25000
MI40.094850.304760.799500.000000.25000
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
PI10.017250.021450.001940.000000.000000.00000
PI20.025510.026630.001940.000000.000000.00000
PI30.027030.020070.002140.000000.000000.00036
PI40.027030.020070.002140.000000.000000.00036
PI50.026470.019670.002140.000000.000000.00022
PI60.026470.019670.002140.000000.000000.00022
PI70.016280.020840.001940.000000.000000.00000
PI80.024600.026070.001940.000000.000000.00000
PI90.054040.021280.002550.000000.000000.00107
PI100.054040.021280.002550.000000.000000.00107
PI110.055910.020340.002610.000000.000000.00078
PI120.055910.020340.002610.000000.000000.00078
MI20.195000.019470.002050.000000.000000.00008
MI30.059330.155150.002100.078330.000110.00004
MI40.059330.155150.002100.078330.000110.00004
Geometric parameters (Å, º) top
PI1—PI21.347PI5—PI61.479
PI1—PI31.342PI3—PI71.070
PI3—PI41.401PI4—PI81.090
PI4—PI51.386PI6—MI20.940
PI3—PI1—PI3121.5PI4—PI5—PI4116.0
PI1—PI3—PI4119.4PI1—PI3—PI7117.0
PI3—PI4—PI5122.9PI3—PI4—PI8116.6
PI4—PI5—PI6122.2PI5—PI6—MI2112.3
(100K) 4-methylpyridine-N-oxide top
Crystal data top
C5D4NO·(CD3)V = 2431.36 (8) Å3
Mr = 116Z = 16
Orthorhombic, FDDDMelting point: 463 K
Hall symbol: -F 2uv 2vwConstant Wavelength Neutron radiation, λ = 1.225300 Å
a = 12.1382 (3) ÅT = 100 K
b = 10.2367 (2) Åcylinder, ? × ? × ? mm
c = 19.5676 (3) Å
Data collection top
Home made powder
diffractometer
Specimen mounting: vanadium
Radiation source: nuclear reactor, 3T22θmin = 0.043°, 2θmax = 125.407°, 2θstep = 0.050°
Refinement top
Rp = 2.246Profile function: pseudo-voigt
Rwp = 2.75063 parameters
Rexp = 1.4190 restraints
RBragg = 4.201
χ2 = 3.725Background function: FullProf Background function number
2079 data points
Crystal data top
C5D4NO·(CD3)V = 2431.36 (8) Å3
Mr = 116Z = 16
Orthorhombic, FDDDConstant Wavelength Neutron radiation, λ = 1.225300 Å
a = 12.1382 (3) ÅT = 100 K
b = 10.2367 (2) Åcylinder, ? × ? × ? mm
c = 19.5676 (3) Å
Data collection top
Home made powder
diffractometer
2θmin = 0.043°, 2θmax = 125.407°, 2θstep = 0.050°
Specimen mounting: vanadium
Refinement top
Rp = 2.246χ2 = 3.725
Rwp = 2.7502079 data points
Rexp = 1.41963 parameters
RBragg = 4.2010 restraints
Special details top

Geometry. Rigid body group non refined

Refinement. Two rigid-body groups (C5D7NO and CD3 methyl group) with TLS

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
PN10.625000.125000.313630.00000
PN20.625000.125000.244810.00000
PN30.548470.193070.346370.000000.50000
PN40.701530.056930.346380.000000.50000
PN50.547110.194280.418130.000000.50000
PN60.702890.055720.418130.000000.50000
PN70.625000.125000.456320.00000
PN80.625000.125000.531900.00000
PN90.489730.245310.316190.000000.50000
PN100.760270.004690.316200.000000.50000
PN110.483140.251180.443540.000000.50000
PN120.766860.001180.443540.000000.50000
MN20.618680.212890.550220.000000.50000
MN30.563980.074560.550220.000000.50000
MN40.692350.087540.550220.000000.50000
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
PN10.004080.005130.000740.000110.000000.00000
PN20.004500.007850.000740.000810.000000.00000
PN30.004930.006800.000920.001760.000090.00039
PN40.004930.006800.000920.001760.000090.00039
PN50.004930.006650.000930.001440.000280.00004
PN60.004930.006650.000930.001440.000280.00004
PN70.004030.004790.000740.000700.000000.00000
PN80.004450.007520.000740.002620.000000.00000
PN90.007060.012510.001310.004850.000030.00101
PN100.007060.012510.001310.004850.000030.00101
PN110.007270.012730.001370.004710.000620.00034
PN120.007270.012730.001370.004710.000620.00034
MN20.060110.004670.000850.005780.000030.00007
MN30.022440.057650.000730.031380.000010.00000
MN40.014140.069320.000820.025910.000020.00006
Geometric parameters (Å, º) top
PI1—PI21.347PI5—PI61.479
PI1—PI31.342PI3—PI71.070
PI3—PI41.401PI4—PI81.090
PI4—PI51.386PI6—MI20.980
PI3—PI1—PI3121.5PI4—PI5—PI4116.0
PI1—PI3—PI4119.4PI1—PI3—PI7117.0
PI3—PI4—PI5122.9PI3—PI4—PI8116.6
PI4—PI5—PI6122.2PI5—PI6—MI2112.9
(10K) 4-methylpyridine-N-oxide top
Crystal data top
C5D4NO·(CD3)V = 4673.61 (10) Å3
Mr = 116Z = 32
Tetragonal, P41Melting point: 463 K
Hall symbol: P 4wConstant Wavelength Neutron Diffraction radiation, λ = 1.225300 Å
a = 15.41038 (19) ÅT = 10 K
c = 19.6800 (3) Åcylinder, ? × ? × ? mm
Data collection top
Laboratoire Leon Brillouin
diffractometer
Specimen mounting: vanadium
Radiation source: nuclear reactor, 3T22θmin = 0.062°, 2θmax = 125.388°, 2θstep = 0.050°
Refinement top
Rp = 2.797Profile function: pseudo-voigt
Rwp = 3.36536 parameters
Rexp = 1.4280 restraints
RBragg = 4.047
χ2 = 5.523Background function: FullProf Background function number
2079 data points
Crystal data top
C5D4NO·(CD3)V = 4673.61 (10) Å3
Mr = 116Z = 32
Tetragonal, P41Constant Wavelength Neutron Diffraction radiation, λ = 1.225300 Å
a = 15.41038 (19) ÅT = 10 K
c = 19.6800 (3) Åcylinder, ? × ? × ? mm
Data collection top
Laboratoire Leon Brillouin
diffractometer
2θmin = 0.062°, 2θmax = 125.388°, 2θstep = 0.050°
Specimen mounting: vanadium
Refinement top
Rp = 2.797χ2 = 5.523
Rwp = 3.3652079 data points
Rexp = 1.42836 parameters
RBragg = 4.0470 restraints
Special details top

Geometry. Rigid body group non refined

Refinement. 16 rigid-body groups (C5D7NO and CD3) with isotropic Bs & TLS

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
PI10.657090.845030.568930.00441*
PI20.660590.850440.500690.00588*
PI30.688400.774010.599900.00224*
PI40.622370.910770.604470.00224*
PI50.684870.768160.670900.00224*
PI60.618630.905370.675490.00224*
PI70.649840.833810.710420.00224*
PI80.646000.827870.785360.01103*
PI90.715010.724470.568050.01445*
PI100.598850.965080.576100.01445*
PI110.711160.709150.693590.01445*
PI120.589820.960470.702000.01445*
MI20.619450.884630.807430.00000
MI30.607200.775150.801720.00000
MI40.708270.819060.807030.00000
PJ10.910120.593030.065100.00441*
PJ20.916530.586000.002920.00588*
PJ30.884300.524060.101530.00224*
PJ40.929690.668860.094970.00224*
PJ50.877560.531150.172320.00224*
PJ60.923100.676420.165740.00224*
PJ70.896830.607620.206140.00224*
PJ80.889790.615350.280840.01103*
PJ90.869900.465980.074010.01445*
PJ100.949750.720740.062470.01445*
PJ110.856310.473270.199580.01445*
PJ120.939720.739370.187530.01445*
MJ20.869390.556530.303600.00000
MJ30.949840.632130.303450.00000
MJ40.844510.663570.295370.00000
PK10.912100.842900.324250.00441*
PK20.914240.836790.256010.00588*
PK30.835200.841640.356280.00224*
PK40.986910.850110.358730.00224*
PK50.832730.847990.427280.00224*
PK60.984930.856480.429740.00224*
PK70.907660.855570.465740.00224*
PK80.905310.862280.540680.01103*
PK90.778550.835730.325240.01445*
PK101.045460.850630.329550.01445*
PK110.768660.846660.450860.01445*
PK121.047450.862220.455370.01445*
MK20.898720.800760.564070.00000
MK30.962610.890670.560360.00000
MK40.852730.900790.557690.00000
PL10.904150.847080.939590.00441*
PL20.905300.840621.007820.00588*
PL30.911600.774880.901880.00224*
PL40.895570.925580.910790.00224*
PL50.910420.781350.830860.00224*
PL60.894340.932550.839800.00224*
PL70.901740.860470.798110.00224*
PL80.900470.867560.723170.01103*
PL90.918190.714810.928600.01445*
PL100.889990.979950.944280.01445*
PL110.916690.720810.802540.01445*
PL120.887230.997750.818920.01445*
ML20.897890.805940.699480.00000
ML30.846090.903110.705660.00000
ML40.956410.899340.704290.00000
PM10.652590.587450.441630.00441*
PM20.659230.589140.509840.00588*
PM30.648930.510650.409570.00224*
PM40.649770.662600.407200.00224*
PM50.642020.508640.338580.00224*
PM60.642860.661080.336220.00224*
PM70.638820.583940.300190.00224*
PM80.631520.582080.225270.01103*
PM90.651540.453710.440560.01445*
PM100.653020.721030.436400.01445*
PM110.639270.444640.314980.01445*
PM120.640820.723870.310640.01445*
MM20.591360.530720.208310.00000
MM30.604690.640260.205840.00000
MM40.692660.573780.201600.00000
PN10.665320.846870.197990.00441*
PN20.664500.850460.266360.00588*
PN30.735550.815210.166150.00224*
PN40.595890.875030.163200.00224*
PN50.736640.811380.095020.00224*
PN60.596520.871390.092050.00224*
PN70.667020.839420.056240.00224*
PN80.667930.835480.018840.01103*
PN90.788220.794090.197440.01445*
PN100.542500.899320.192240.01445*
PN110.795200.785130.071610.01445*
PN120.538550.895040.066170.01445*
MN20.713340.879370.040020.00000
MN30.684520.772880.036800.00000
MN40.606640.851030.039890.00000
PO10.595720.090110.451730.00441*
PO20.589560.081900.519680.00588*
PO30.631620.025740.415370.00224*
PO40.565830.162490.421850.00224*
PO50.638150.034070.344650.00224*
PO60.572140.171270.351150.00224*
PO70.608510.107150.310830.00224*
PO80.615280.116180.236200.01103*
PO90.653880.029800.442890.01445*
PO100.538130.210790.454290.01445*
PO110.667820.020020.317450.01445*
PO120.546920.231280.329360.01445*
MO20.555020.132740.213860.00000
MO30.660050.165080.222100.00000
MO40.636200.057940.212830.00000
PP10.655030.598920.827560.00441*
PP20.660320.597500.759270.00588*
PP30.576760.604490.857190.00224*
PP40.728140.594720.864500.00224*
PP50.571000.605980.928240.00224*
PP60.722880.596180.935580.00224*
PP70.644050.601850.969160.00224*
PP80.638240.603411.044160.01103*
PP90.521620.607580.824280.01445*
PP100.787940.590390.837150.01445*
PP110.505940.610570.949800.01445*
PP120.784120.592610.963250.01445*
MP20.700220.607781.067180.00000
MP30.601600.656941.061870.00000
MP40.608330.546771.063590.00000
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
MI20.012110.001420.000050.003230.000010.00002
MI30.010030.002570.000050.003690.000010.00002
MI40.004720.008840.000050.000470.000020.00000
MJ20.012110.001420.000050.003230.000010.00002
MJ30.010030.002570.000050.003690.000010.00002
MJ40.004720.008840.000050.000470.000020.00000
MK20.012110.001420.000050.003230.000010.00002
MK30.010030.002570.000050.003690.000010.00002
MK40.004720.008840.000050.000470.000020.00000
ML20.012110.001420.000050.003230.000010.00002
ML30.010030.002570.000050.003690.000010.00002
ML40.004720.008840.000050.000470.000020.00000
MM20.012110.001420.000050.003230.000010.00002
MM30.010030.002570.000050.003690.000010.00002
MM40.004720.008840.000050.000470.000020.00000
MN20.012110.001420.000050.003230.000010.00002
MN30.010030.002570.000050.003690.000010.00002
MN40.004720.008840.000050.000470.000020.00000
MO20.012110.001420.000050.003230.000010.00002
MO30.010030.002570.000050.003690.000010.00002
MO40.004720.008840.000050.000470.000020.00000
MP20.012110.001420.000050.003230.000010.00002
MP30.010030.002570.000050.003690.000010.00002
MP40.004720.008840.000050.000470.000020.00000
Geometric parameters (Å, º) top
PI1—PI21.347PI5—PI61.479
PI1—PI31.342PI3—PI71.070
PI3—PI41.401PI4—PI81.090
PI4—PI51.386PI6—MI21.070
PI3—PI1—PI3121.5PI4—PI5—PI4116.0
PI1—PI3—PI4119.4PI1—PI3—PI7117.0
PI3—PI4—PI5122.9PI3—PI4—PI8116.6
PI4—PI5—PI6122.2PI5—PI6—MI2113.0

Experimental details

(250K)(100K)(10K)
Crystal data
Chemical formulaC5D4NO·(CD3)C5D4NO·(CD3)C5D4NO·(CD3)
Mr116116116
Crystal system, space groupTetragonal, I41/amdOrthorhombic, FDDDTetragonal, P41
Temperature (K)25010010
a, b, c (Å)7.9411 (2), 7.9411 (2), 19.6002 (5)12.1382 (3), 10.2367 (2), 19.5676 (3)15.41038 (19), 15.41038 (19), 19.6800 (3)
α, β, γ (°)90, 90, 9090, 90, 9090, 90, 90
V3)1236.03 (6)2431.36 (8)4673.61 (10)
Z81632
Radiation typeConstant Wavelength neutron, λ = 1.225300 ÅConstant Wavelength Neutron, λ = 1.225300 ÅConstant Wavelength Neutron Diffraction, λ = 1.225300 Å
Specimen shape, size (mm)Cylinder, ? × ? × ?Cylinder, ? × ? × ?Cylinder, ? × ? × ?
Data collection
DiffractometerHome made powder
diffractometer
Home made powder
diffractometer
Laboratoire Leon Brillouin
Specimen mountingVanadiumVanadiumVanadium
Data collection mode???
Scan method???
2θ values (°)2θmin = 0.026 2θmax = 125.424 2θstep = 0.0502θmin = 0.043 2θmax = 125.407 2θstep = 0.0502θmin = 0.062 2θmax = 125.388 2θstep = 0.050
Refinement
R factors and goodness of fitRp = 2.045, Rwp = 2.506, Rexp = 1.501, RBragg = 4.610, χ2 = 2.789Rp = 2.246, Rwp = 2.750, Rexp = 1.419, RBragg = 4.201, χ2 = 3.725Rp = 2.797, Rwp = 3.365, Rexp = 1.428, RBragg = 4.047, χ2 = 5.523
No. of data points227920792079
No. of parameters496336

Computer programs: FULLPROF, DIAMOND.

Selected geometric parameters (Å, º) for (250K) top
PI1—PI21.347PI5—PI61.479
PI1—PI31.342PI3—PI71.070
PI3—PI41.401PI4—PI81.090
PI4—PI51.386PI6—MI20.940
PI3—PI1—PI3121.5PI4—PI5—PI4116.0
PI1—PI3—PI4119.4PI1—PI3—PI7117.0
PI3—PI4—PI5122.9PI3—PI4—PI8116.6
PI4—PI5—PI6122.2PI5—PI6—MI2112.3
Selected geometric parameters (Å, º) for (100K) top
PI1—PI21.347PI5—PI61.479
PI1—PI31.342PI3—PI71.070
PI3—PI41.401PI4—PI81.090
PI4—PI51.386PI6—MI20.980
PI3—PI1—PI3121.5PI4—PI5—PI4116.0
PI1—PI3—PI4119.4PI1—PI3—PI7117.0
PI3—PI4—PI5122.9PI3—PI4—PI8116.6
PI4—PI5—PI6122.2PI5—PI6—MI2112.9
Selected geometric parameters (Å, º) for (10K) top
PI1—PI21.347PI5—PI61.479
PI1—PI31.342PI3—PI71.070
PI3—PI41.401PI4—PI81.090
PI4—PI51.386PI6—MI21.070
PI3—PI1—PI3121.5PI4—PI5—PI4116.0
PI1—PI3—PI4119.4PI1—PI3—PI7117.0
PI3—PI4—PI5122.9PI3—PI4—PI8116.6
PI4—PI5—PI6122.2PI5—PI6—MI2113.0
 

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