Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270104027660/av1213sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270104027660/av1213Isup2.hkl |
CCDC reference: 259027
A mixture of Cu(CH3CO2)2·H2O (0.4 mmol), OH—H2BDC (0.3 mmol), pyridine (0.6 mmol), NaOH (0.5 mmol) and water (15 ml) was sealed in a 25 ml stainless steel reactor with a Teflon liner. The reaction system was heated at 433 K for 60 h, and then cooled slowly to room temperature. A large number of green crystals of the title complex were obtained and collected by filtration, washed with water and dried in air (56.2% yield based on H3OABDC).
All H atoms were placed at calculated positions and refined with isotropic displacement parameters, using a riding model [C—H = 0.93 Å, O—H = 0.82 Å, and Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O)].
Data collection: SMART (Siemens, 1996); cell refinement: SMART and SAINT (Siemens,1994); data reduction: XPREP in SHELXTL (Siemens, 1994); program(s) used to solve structure: SHELXTL; program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
[Cu(C8H4O5)(C5H5N)2] | F(000) = 820 |
Mr = 401.85 | Dx = 1.472 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 10.1055 (9) Å | Cell parameters from 2698 reflections |
b = 11.6854 (11) Å | θ = 2.7–25.1° |
c = 15.7236 (14) Å | µ = 1.24 mm−1 |
β = 102.415 (2)° | T = 293 K |
V = 1813.3 (3) Å3 | Prism, green |
Z = 4 | 0.40 × 0.30 × 0.20 mm |
Siemens SMART CCD area-detector diffractometer | 3159 independent reflections |
Radiation source: fine-focus sealed tube | 2455 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
ϕ and ω scans | θmax = 25.1°, θmin = 2.7° |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | h = −12→7 |
Tmin = 0.802, Tmax = 1.000 | k = −13→12 |
5825 measured reflections | l = −18→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.071 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.192 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0665P)2 + 13.3127P] where P = (Fo2 + 2Fc2)/3 |
3159 reflections | (Δ/σ)max < 0.001 |
235 parameters | Δρmax = 0.72 e Å−3 |
0 restraints | Δρmin = −0.45 e Å−3 |
[Cu(C8H4O5)(C5H5N)2] | V = 1813.3 (3) Å3 |
Mr = 401.85 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.1055 (9) Å | µ = 1.24 mm−1 |
b = 11.6854 (11) Å | T = 293 K |
c = 15.7236 (14) Å | 0.40 × 0.30 × 0.20 mm |
β = 102.415 (2)° |
Siemens SMART CCD area-detector diffractometer | 3159 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 2455 reflections with I > 2σ(I) |
Tmin = 0.802, Tmax = 1.000 | Rint = 0.048 |
5825 measured reflections |
R[F2 > 2σ(F2)] = 0.071 | 0 restraints |
wR(F2) = 0.192 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0665P)2 + 13.3127P] where P = (Fo2 + 2Fc2)/3 |
3159 reflections | Δρmax = 0.72 e Å−3 |
235 parameters | Δρmin = −0.45 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu | 0.09424 (8) | 0.88890 (7) | 0.41120 (5) | 0.0275 (3) | |
O1 | −0.0428 (6) | 0.9264 (4) | 0.5842 (3) | 0.0426 (13) | |
O2 | −0.0081 (5) | 0.8052 (4) | 0.4821 (3) | 0.0403 (13) | |
O3 | −0.2848 (6) | 0.7777 (4) | 0.8109 (3) | 0.0491 (15) | |
O4 | −0.2951 (5) | 0.5890 (4) | 0.8247 (3) | 0.0324 (11) | |
O5 | −0.1504 (7) | 0.4234 (4) | 0.5667 (4) | 0.066 (2) | |
H5A | −0.1689 | 0.3762 | 0.6009 | 0.099* | |
N1 | −0.0665 (6) | 0.8727 (5) | 0.3077 (4) | 0.0384 (14) | |
N2 | 0.2626 (6) | 0.8984 (5) | 0.5066 (4) | 0.0392 (14) | |
C1 | 0.2775 (9) | 0.9739 (8) | 0.5710 (5) | 0.053 (2) | |
H1 | 0.2047 | 1.0210 | 0.5746 | 0.063* | |
C2 | 0.3979 (11) | 0.9856 (10) | 0.6335 (7) | 0.078 (3) | |
H2 | 0.4045 | 1.0392 | 0.6780 | 0.093* | |
C3 | 0.5041 (12) | 0.9185 (11) | 0.6289 (7) | 0.086 (4) | |
H3 | 0.5854 | 0.9262 | 0.6695 | 0.103* | |
C4 | 0.4919 (10) | 0.8392 (13) | 0.5643 (7) | 0.091 (4) | |
H4 | 0.5641 | 0.7917 | 0.5601 | 0.110* | |
C5 | 0.3691 (9) | 0.8310 (9) | 0.5048 (6) | 0.062 (2) | |
H5B | 0.3603 | 0.7757 | 0.4614 | 0.074* | |
C6 | −0.1486 (9) | 0.7812 (8) | 0.2959 (6) | 0.057 (2) | |
H6 | −0.1390 | 0.7263 | 0.3397 | 0.068* | |
C7 | −0.2475 (11) | 0.7659 (11) | 0.2204 (7) | 0.079 (3) | |
H7 | −0.3042 | 0.7024 | 0.2145 | 0.095* | |
C8 | −0.2610 (10) | 0.8450 (10) | 0.1545 (7) | 0.071 (3) | |
H8 | −0.3250 | 0.8347 | 0.1029 | 0.086* | |
C9 | −0.1785 (10) | 0.9393 (10) | 0.1661 (6) | 0.070 (3) | |
H9 | −0.1867 | 0.9951 | 0.1231 | 0.084* | |
C10 | −0.0826 (8) | 0.9498 (7) | 0.2435 (5) | 0.051 (2) | |
H10 | −0.0265 | 1.0137 | 0.2510 | 0.061* | |
C11 | −0.2112 (7) | 0.6609 (6) | 0.7066 (4) | 0.0294 (15) | |
C12 | −0.1606 (6) | 0.7516 (6) | 0.6663 (4) | 0.0273 (14) | |
H12 | −0.1605 | 0.8251 | 0.6890 | 0.033* | |
C13 | −0.1101 (7) | 0.7328 (6) | 0.5920 (4) | 0.0292 (14) | |
C14 | −0.1090 (7) | 0.6229 (6) | 0.5590 (5) | 0.0366 (17) | |
H14 | −0.0756 | 0.6103 | 0.5091 | 0.044* | |
C15 | −0.1572 (8) | 0.5315 (6) | 0.5998 (5) | 0.0388 (18) | |
C16 | −0.2099 (7) | 0.5519 (6) | 0.6728 (5) | 0.0359 (16) | |
H16 | −0.2449 | 0.4913 | 0.6994 | 0.043* | |
C17 | −0.2675 (7) | 0.6793 (6) | 0.7876 (4) | 0.0307 (15) | |
C18 | −0.0490 (6) | 0.8317 (6) | 0.5502 (4) | 0.0261 (14) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu | 0.0350 (5) | 0.0274 (4) | 0.0250 (4) | −0.0018 (4) | 0.0171 (3) | 0.0002 (4) |
O1 | 0.068 (4) | 0.026 (3) | 0.042 (3) | −0.006 (2) | 0.031 (3) | −0.001 (2) |
O2 | 0.064 (3) | 0.031 (3) | 0.036 (3) | −0.007 (2) | 0.035 (3) | 0.000 (2) |
O3 | 0.087 (4) | 0.025 (3) | 0.047 (3) | 0.005 (3) | 0.041 (3) | −0.001 (2) |
O4 | 0.038 (3) | 0.033 (3) | 0.033 (2) | 0.003 (2) | 0.022 (2) | 0.005 (2) |
O5 | 0.130 (6) | 0.025 (3) | 0.063 (4) | −0.016 (3) | 0.065 (4) | −0.010 (3) |
N1 | 0.038 (3) | 0.038 (3) | 0.041 (3) | 0.001 (3) | 0.013 (3) | −0.002 (3) |
N2 | 0.048 (4) | 0.041 (4) | 0.033 (3) | 0.007 (3) | 0.017 (3) | 0.001 (3) |
C1 | 0.053 (5) | 0.063 (6) | 0.040 (4) | 0.003 (4) | 0.006 (4) | −0.008 (4) |
C2 | 0.076 (7) | 0.084 (8) | 0.063 (6) | 0.010 (6) | −0.005 (5) | −0.029 (6) |
C3 | 0.071 (7) | 0.107 (10) | 0.065 (7) | 0.009 (7) | −0.016 (6) | −0.015 (7) |
C4 | 0.040 (6) | 0.153 (12) | 0.071 (7) | 0.030 (7) | −0.008 (5) | 0.004 (8) |
C5 | 0.059 (6) | 0.070 (6) | 0.053 (5) | 0.014 (5) | 0.005 (4) | −0.011 (5) |
C6 | 0.064 (6) | 0.059 (6) | 0.052 (5) | −0.019 (5) | 0.020 (4) | −0.010 (4) |
C7 | 0.077 (7) | 0.094 (9) | 0.068 (7) | −0.035 (6) | 0.017 (6) | −0.023 (6) |
C8 | 0.051 (6) | 0.098 (8) | 0.059 (6) | −0.012 (6) | −0.003 (5) | −0.016 (6) |
C9 | 0.060 (6) | 0.090 (8) | 0.052 (5) | −0.002 (6) | −0.003 (5) | 0.001 (5) |
C10 | 0.050 (5) | 0.047 (5) | 0.051 (5) | −0.006 (4) | 0.001 (4) | 0.006 (4) |
C11 | 0.042 (4) | 0.027 (3) | 0.025 (3) | 0.004 (3) | 0.021 (3) | 0.004 (3) |
C12 | 0.029 (3) | 0.030 (3) | 0.025 (3) | −0.001 (3) | 0.009 (3) | −0.002 (3) |
C13 | 0.033 (4) | 0.029 (3) | 0.030 (3) | 0.000 (3) | 0.016 (3) | 0.000 (3) |
C14 | 0.052 (4) | 0.032 (4) | 0.033 (4) | −0.003 (3) | 0.025 (3) | 0.000 (3) |
C15 | 0.066 (5) | 0.021 (3) | 0.038 (4) | −0.006 (3) | 0.029 (4) | −0.005 (3) |
C16 | 0.047 (4) | 0.029 (4) | 0.038 (4) | 0.001 (3) | 0.021 (3) | 0.000 (3) |
C17 | 0.038 (4) | 0.029 (4) | 0.030 (3) | 0.004 (3) | 0.020 (3) | 0.005 (3) |
C18 | 0.028 (3) | 0.028 (4) | 0.024 (3) | 0.000 (3) | 0.010 (3) | 0.003 (3) |
Cu—O2 | 1.941 (4) | C4—C5 | 1.387 (13) |
Cu—O4i | 1.955 (4) | C4—H4 | 0.9300 |
Cu—N2 | 2.014 (6) | C5—H5B | 0.9300 |
Cu—N1 | 2.046 (6) | C6—C7 | 1.389 (13) |
Cu—O1ii | 2.225 (5) | C6—H6 | 0.9300 |
O1—C18 | 1.225 (8) | C7—C8 | 1.374 (15) |
O1—Cu1ii | 2.225 (5) | C7—H7 | 0.9300 |
O2—C18 | 1.265 (7) | C8—C9 | 1.371 (15) |
O3—C17 | 1.231 (8) | C8—H8 | 0.9300 |
O4—C17 | 1.266 (8) | C9—C10 | 1.389 (12) |
O4—Cu1iii | 1.955 (4) | C9—H9 | 0.9300 |
O5—C15 | 1.374 (8) | C10—H10 | 0.9300 |
O5—H5A | 0.8200 | C11—C16 | 1.382 (10) |
N1—C10 | 1.337 (10) | C11—C12 | 1.388 (9) |
N1—C6 | 1.342 (10) | C11—C17 | 1.518 (8) |
N2—C1 | 1.328 (10) | C12—C13 | 1.388 (9) |
N2—C5 | 1.338 (11) | C12—H12 | 0.9300 |
C1—C2 | 1.397 (12) | C13—C14 | 1.386 (9) |
C1—H1 | 0.9300 | C13—C18 | 1.525 (9) |
C2—C3 | 1.344 (15) | C14—C15 | 1.387 (9) |
C2—H2 | 0.9300 | C14—H14 | 0.9300 |
C3—C4 | 1.360 (16) | C15—C16 | 1.386 (9) |
C3—H3 | 0.9300 | C16—H16 | 0.9300 |
O2—Cu—O4i | 157.2 (2) | C7—C6—H6 | 119.0 |
O2—Cu—N2 | 94.0 (2) | C8—C7—C6 | 119.7 (10) |
O4i—Cu—N2 | 89.6 (2) | C8—C7—H7 | 120.2 |
O2—Cu—N1 | 88.9 (2) | C6—C7—H7 | 120.2 |
O4i—Cu—N1 | 86.2 (2) | C9—C8—C7 | 118.8 (9) |
N2—Cu—N1 | 175.0 (2) | C9—C8—H8 | 120.6 |
O2—Cu—O1ii | 108.26 (19) | C7—C8—H8 | 120.6 |
O4i—Cu—O1ii | 93.81 (18) | C8—C9—C10 | 118.5 (10) |
N2—Cu—O1ii | 95.1 (2) | C8—C9—H9 | 120.7 |
N1—Cu—O1ii | 88.0 (2) | C10—C9—H9 | 120.7 |
C18—O1—Cu1ii | 154.2 (5) | N1—C10—C9 | 123.5 (9) |
C18—O2—Cu1 | 132.4 (5) | N1—C10—H10 | 118.3 |
C17—O4—Cu1iii | 115.2 (4) | C9—C10—H10 | 118.3 |
C15—O5—H5A | 109.5 | C16—C11—C12 | 119.6 (6) |
C10—N1—C6 | 117.5 (7) | C16—C11—C17 | 119.3 (6) |
C10—N1—Cu1 | 119.0 (5) | C12—C11—C17 | 121.1 (6) |
C6—N1—Cu1 | 123.0 (6) | C11—C12—C13 | 120.1 (6) |
C1—N2—C5 | 116.5 (7) | C11—C12—H12 | 120.0 |
C1—N2—Cu1 | 122.9 (6) | C13—C12—H12 | 120.0 |
C5—N2—Cu1 | 120.5 (6) | C14—C13—C12 | 119.7 (6) |
N2—C1—C2 | 122.7 (8) | C14—C13—C18 | 120.3 (5) |
N2—C1—H1 | 118.6 | C12—C13—C18 | 119.9 (6) |
C2—C1—H1 | 118.6 | C13—C14—C15 | 120.5 (6) |
C3—C2—C1 | 119.3 (9) | C13—C14—H14 | 119.7 |
C3—C2—H2 | 120.4 | C15—C14—H14 | 119.7 |
C1—C2—H2 | 120.4 | O5—C15—C16 | 122.1 (6) |
C2—C3—C4 | 119.5 (10) | O5—C15—C14 | 118.8 (6) |
C2—C3—H3 | 120.2 | C16—C15—C14 | 119.2 (6) |
C4—C3—H3 | 120.2 | C11—C16—C15 | 120.9 (6) |
C3—C4—C5 | 118.3 (10) | C11—C16—H16 | 119.6 |
C3—C4—H4 | 120.8 | C15—C16—H16 | 119.6 |
C5—C4—H4 | 120.8 | O3—C17—O4 | 125.6 (6) |
N2—C5—C4 | 123.5 (9) | O3—C17—C11 | 119.1 (6) |
N2—C5—H5B | 118.2 | O4—C17—C11 | 115.4 (6) |
C4—C5—H5B | 118.2 | O1—C18—O2 | 126.6 (6) |
N1—C6—C7 | 122.0 (9) | O1—C18—C13 | 118.9 (5) |
N1—C6—H6 | 119.0 | O2—C18—C13 | 114.5 (6) |
Symmetry codes: (i) x+1/2, −y+3/2, z−1/2; (ii) −x, −y+2, −z+1; (iii) x−1/2, −y+3/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C8H4O5)(C5H5N)2] |
Mr | 401.85 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.1055 (9), 11.6854 (11), 15.7236 (14) |
β (°) | 102.415 (2) |
V (Å3) | 1813.3 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.24 |
Crystal size (mm) | 0.40 × 0.30 × 0.20 |
Data collection | |
Diffractometer | Siemens SMART CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.802, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5825, 3159, 2455 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.071, 0.192, 1.07 |
No. of reflections | 3159 |
No. of parameters | 235 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.0665P)2 + 13.3127P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 0.72, −0.45 |
Computer programs: SMART (Siemens, 1996), SMART and SAINT (Siemens,1994), XPREP in SHELXTL (Siemens, 1994), SHELXTL.
Cu—O2 | 1.941 (4) | Cu—N1 | 2.046 (6) |
Cu—O4i | 1.955 (4) | Cu—O1ii | 2.225 (5) |
Cu—N2 | 2.014 (6) | ||
O2—Cu—O4i | 157.2 (2) | N2—Cu—N1 | 175.0 (2) |
O2—Cu—N2 | 94.0 (2) | O2—Cu—O1ii | 108.26 (19) |
O4i—Cu—N2 | 89.6 (2) | O4i—Cu—O1ii | 93.81 (18) |
O2—Cu—N1 | 88.9 (2) | N2—Cu—O1ii | 95.1 (2) |
O4i—Cu—N1 | 86.2 (2) | N1—Cu—O1ii | 88.0 (2) |
Symmetry codes: (i) x+1/2, −y+3/2, z−1/2; (ii) −x, −y+2, −z+1. |
The design and syntheses of supramolecular coordination polymer networks, especially those constructed via hydrogen bonding and π–π stacking interactions, has been a field of rapid growth because of the special physical properties of these compounds and their potential application in functional materials (Atwood et al., 1996; Barton et al., 1999). Coordination polymers containing symmetric multidentate benzenecarboxylate as bridging ligands have attracted increasing attention because of their interesting network structure and potential application in many fields (Li et al., 1999; Yaghi et al., 1995; Chui et al., 1999). Large numbers of coordination polymers have been prepared from metal ions and aromatic carboxylate ligands such as benzenehexacarboxylate (Wu et al., 1996), 1,3-benzenedicarboxylate (Reineke et al., 1999) and 1,3,5-benzenetricarboxylate (Yaghi et al., 1997; Daiguebonne et al., 1996; Gutschke et al., 1996). 5-Hydroxyisophthalic acid, OH—H2BDC, like benzene-1,3,5-tricarboxylic acid, has two carboxylic acid groups arranged meta to one another, but with a phenol hydroxy group meta to both (Plate et al., 2001). This phenol hydroxy group was intended as a mimic for the third carboxy group, which remains protonated in the reported layered and helical chain polymers (Foreman et al., 1999; Cao et al., 2004), as well as in the title compound. As part of our research interest in new polycarboxylic acid-bridged polymeric complexes, the title complex, (I), was obtained by the hydrothermal reaction of OH—H2BDC with cupric acetate and pyridine.
As shown in Fig. 1, the Cu atoms in (I) are five-coordinated via two N atoms from the pyridine ligands and three O atoms from hydroxyisophthalate ligands in a highly distorted triangular bipyramidal environment, with Cu—O distances in the range 1.941 (4)–2.225 (5) Å and Cu—N distances of 2.014 (6) and 2.046 (6) Å. These bond distances are similar to those found in {[Cu2(1,3-bdc)2(py)2]4}n (1,3-bdc is 1,3-benzenedicarboxylate; Bourne et al., 2001), [Cu3(TMA)2(H2O)3]n (TMA is benzene-1,3,5-tricarboxylate; Chui et al., 1999), {[Cu2(bdc)2(Q)2]n} (Q is quinoline; Moulton et al., 2003) and the closest relative catena-[(µ3-benzene-1,3-dicarboxylato)bis(pyridine)copper], [Cu(1,3-bdc)(py)2]n (Bourne et al., 2001). The dihedral angle between the two py rings that coordinate to the same Cu atom is 75.41°. The asymmetric unit thus consists of one Cu atom, two pyridine ligands and one hydroxyisophthalate ligand. The 5-hydroxyisophthalate group acts as a tridentate ligand in this structure, with one carboxylate group bonding in a monodentate fashion to one Cu atom and the two remaining O atoms bonding in a monodentate fashion to two further Cu atoms. As illustrated in Fig. 2, the interesting feature for polymer (I) is that the OH-BDC ligands link copper centers in different ways to produce two different subrings, which are 36-membered and eight-membered with Cu···Cu distances of 16.935 (5), 9.814 (2) and 4.523 (3) Å, respectively. In other words, the two-dimensional network of [Cu(OH-BDC)]n moieties can also be envisioned as being built up from the interlocking 36- and eight-membered rings via sharing of Cu atoms. The coordinated pyridine rings point to the layer region alternately above and below the two-dimensional net as terminal ligands. Finally, as illustrated in Fig. 3, the two-dimensional [Cu(OH-BDC)(py)2]n layers are assembled into a three-dimensional framework via edge- or point-to-face C—H ···π interactions and offset or slipped π–π stacking interactions, in which the mean C—H ···π and π–π hydrogen-bonding distances are 3.627 (8) and 3.653 (3) Å, respectively (Janiak, 2000). The dihedral angle between two π–π interacting py rings is 22.83 ° and the distances between the centroids of the two py rings is 4.131 (1) Å.