Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807043942/at2383sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807043942/at2383Isup2.hkl |
CCDC reference: 663593
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.006 Å
- H-atom completeness 97%
- Disorder in solvent or counterion
- R factor = 0.065
- wR factor = 0.141
- Data-to-parameter ratio = 15.3
checkCIF/PLATON results
No syntax errors found Datablock: I
Alert level B PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C24
Alert level C STRVA01_ALERT_4_C Flack test results are ambiguous. From the CIF: _refine_ls_abs_structure_Flack 0.310 From the CIF: _refine_ls_abs_structure_Flack_su 0.020 PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.98 PLAT033_ALERT_2_C Flack Parameter Value Deviates 2 * su from zero. 0.31 PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ? PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.85 PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ? PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.13 PLAT213_ALERT_2_C Atom O21 has ADP max/min Ratio ............. 3.10 prola PLAT213_ALERT_2_C Atom C23 has ADP max/min Ratio ............. 3.50 prola PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.48 Ratio PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C14 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C27 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C34 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for N11 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for N31 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C22 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C25 PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 25.00 Perc. PLAT311_ALERT_2_C Isolated Disordered Oxygen Atom (No H's ?) ..... <O2W PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C25 - C28 ... 1.53 Ang. PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 2
Alert level G FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the _chemical_formula_sum and the formula from the _atom_site* data. Atom count from _chemical_formula_sum:C18 H16.5 Cu1 N2 O5.25 Atom count from the _atom_site data: C18 H16 Cu1 N2 O5.25 ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.853 Tmax scaled 0.853 Tmin scaled 0.745 CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected. CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional? From the CIF: _cell_formula_units_Z 4 From the CIF: _chemical_formula_sum C18 H16.50 Cu N2 O5.25 TEST: Compare cell contents of formula and atom_site data atom Z*formula cif sites diff C 72.00 72.00 0.00 H 66.00 64.00 2.00 Cu 4.00 4.00 0.00 N 8.00 8.00 0.00 O 21.00 21.00 0.00 REFLT03_ALERT_4_G WARNING: Large fraction of Friedel related reflns may be needed to determine absolute structure From the CIF: _diffrn_reflns_theta_max 25.10 From the CIF: _reflns_number_total 2927 Count of symmetry unique reflns 2051 Completeness (_total/calc) 142.71% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 876 Fraction of Friedel pairs measured 0.427 Are heavy atom types Z>Si present yes PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 9
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 22 ALERT level C = Check and explain 8 ALERT level G = General alerts; check 7 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 16 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For related literature, see: Bu et al. (2002); Cutland et al. (2001); Evans & Lin (2000); Evans et al. (1999); Gutschke et al. (2000); Lin et al. (1998, 2000); Ma et al. (1999); Ohmura et al. (2003); Seo et al. (2000); Sun et al. (2001); Tao et al. (2002); Xiong et al. (1998).
A mixture of 4-cyanobenzoic acid (147 mg, 1 mmol), CuO (40 mg, 0.5 mmol), pyrimidine (1 ml) and H2O (9 ml) was loaded into a 25-ml sealed Teflon-lined autoclave, and heated at 160 °C for 5 d, after which it was cooled to room temperature. Blue pismatic crystals of 1 were obtained by filtration of the result solution, and washed by ethanol and diethyl ether successively. IR peaks (cm-1): 3363 (m), 3273 (m), 1605 (versus), 1502 (m), 1448 (s), 1390 (versus), 1356 (versus), 1219 (m), 1147 (m), 1070 (m), 1024 (w), 889 (w), 849 (m), 754 (s), 698 (s), 652 (m), 571 (m), 509 (w).
H atoms of coordination water molecules (O1W) were located in a difference Fourier map and refined as riding in their as-found relative positions, with Uiso(H) = 1.5Ueq(O). The DFIX commands were used to restrain the O—H bond distances of water molecules (Table 1). The H atoms of uncoordinated water molecules (O2W) were not included. Other H atoms were allowed to ride on their respective parent atoms with C—H distances of 0.93 Å, and were included in the refinement with isotropic displacement parameters Uiso(H) = 1.2Ueq(C). ISOR was applied to O2W atom to avoid large adp.
Many interesting in situ reactions such as hydrolysis (Lin et al., 1998; Evans et al., 1999; Lin et al., 2000; Sun et al., 2001), redox (Xiong et al., 1998; Ma et al., 1999; Evans et al., 2000; Tao et al., 2002), and dehydration (Gutschke et al., 2000) can occur under solvothermal environment. It has been found that cyano substituted aromatic compound can be hydrolyzed and the cyano group would be changed to carboxylic acid. For example, Lin's group reported that 3-cyanopyridine or 4-cyanopyridine undergoes a hydrolysis reaction to form 3-pyridinecarboxylic acid (Lin et al., 2000) and 4-pyridinecarboxylic acid (Evans et al., 1999), respectively; Hong's group revealed that the hydrolysis of 1,4-dicyanobenzene gives rise to 1,4-benzenedicarboxylate acid (Sun et al., 2001). The present example shows that 4-cyanobenzoic acid also undergoes a similar hydrolysis procedure.
The hydrothermal reaction of 4-cyanobenzoic acid, CuO, pyridine (py) and water under weak basified conditions gave rise to the title compound (1) as blue prismatic crystals, which were very easy to be efflorescent and become opaque when out of the mother liquid. The IR spectrum of (1) exhibits strong bands at 1605 and 1390 cm-1, which are attributed to the Vas and Vas peaks of COO- group, respectively. The absence of peaks in the range of 2240—2220 cm-1 shows that there exists no cyano group in (1).
A single-crystal X-ray diffraction analysis revealed that compund (1) has a similar 1-D chain structure as that of CuL1(py)2(H2O).py.H2O (L1 = 1,4-benzenedicarboxylate ligand; Ohmura et al., 2003). The crystallographically independent unit of (1) consists of one L1 ligand, two py ligands, one copper(II) atom, one coordination water molecule and hemisemi lattice water molecule. As show in Fig. 1, each copper(II) atom is almost in a square-based pyramidal environment, of which the axial position is occupied by coordination water molecule O1w (Cu1—O1w = 2.243 (3) Å) and the square plane is defined by two nitrogen atoms from two py ligands (Cu—N = 1.996 (3) and 2.010 (3) Å), two oxygen atoms from two L1 ligands (Cu—O = 1.931 (2) and 1.934 (2) Å) with an O24—Cu1—O22 bond angle of 178.3 (1) °. The bond angles of O1w—Cu1—X (X = the atoms in the square plane) vary from 89.4 (1) to 96.2 (1) °, which indicates that O1w is approximately perpendicular to the square plane. In this way, each L1 ligand links two symmetry-related copper(II) atoms (Cu···Cu, ca 10.901 Å) into a 1-D chain along the c direction. Compound 1 crystallizes in space group P212121, and the 1-D chain perfectly lies in the 21 axis. Hence, the 1-D chain is in a helical mode as the case found in the structure of [Cu(L2)(NO3)2]8 (L2 = 2,5-bis(2-pyridyl)-1,3,4-oxodiazole) (Bu et al., 2002). To the best of our knowledge, 1-D helical chiral compound with bridging L1 ligands has only a reported example in the literature (Cutland et al., 2001).
Considering the short contacts shows that the neighboring parallel chains are interconnected by O—H···O hydrogen bonds [O1W···O21i = 2.735 (4) Å, O1w—Hw1···O21i = 133.7 (6) °; O1W···O23ii = 2.719 (3) Å, O1w—Hw2···O23ii = 165 (1)°; (i) x - 1, y, z; (ii) -0.5 - x, 1 - y, -1/2 + z. (Table 1)] to form a layer (Fig. 1). Each of these hydrogen bonds is established from an axially coordinated water molecule to one of the carboxylate group of a neighboring L1 ligand. The distance of two adjacent chains agrees with the Cu1···Cu1a separation of ca 5.990 Å, which is shorter than the L1-bridged Cu···Cu separation. However, considering the short contacts between two adjacent layers, only van der Waals interactions can be found (Fig. 2). The layers are crosswise arranged along the b direction to form a self-complementary structure (Seo et al., 2000) that apparently stabilizes the whole crystal structure. Uncoordinated water molecules locate in the channels along the a direction.
For related literature, see: Bu et al. (2002); Cutland et al. (2001); Evans & Lin (2000); Evans et al. (1999); Gutschke et al. (2000); Lin et al. (1998, 2000); Ma et al. (1999); Ohmura et al. (2003); Seo et al. (2000); Sun et al. (2001); Tao et al. (2002); Xiong et al. (1998).
Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1994); data reduction: XPREP (Siemens, 1995); program(s) used to solve structure: SHELXTL (Siemens, 1995); program(s) used to refine structure: SHELXTL (Siemens, 1995); molecular graphics: SHELXTL (Siemens, 1995); software used to prepare material for publication: SHELXTL (Siemens, 1995).
[Cu(C8H4O4)(C5H5N)2(H2O)]·0.25H2O | F(000) = 838 |
Mr = 408.37 | Dx = 1.375 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 1986 reflections |
a = 5.9896 (7) Å | θ = 2.3–25.1° |
b = 15.2593 (18) Å | µ = 1.14 mm−1 |
c = 21.581 (2) Å | T = 293 K |
V = 1972.4 (4) Å3 | Prismatic, blue |
Z = 4 | 0.48 × 0.24 × 0.14 mm |
Siemens SMART CCD diffractometer | 2927 independent reflections |
Radiation source: fine-focus sealed tube | 1689 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.073 |
ω scans | θmax = 25.1°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −6→7 |
Tmin = 0.874, Tmax = 1.000 | k = −11→18 |
5908 measured reflections | l = −23→25 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.065 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.141 | w = 1/[σ2(Fo2) + (0.032P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.002 |
2927 reflections | Δρmax = 0.71 e Å−3 |
191 parameters | Δρmin = −0.33 e Å−3 |
9 restraints | Absolute structure: Flack (1983), 876 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.31 (2) |
[Cu(C8H4O4)(C5H5N)2(H2O)]·0.25H2O | V = 1972.4 (4) Å3 |
Mr = 408.37 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.9896 (7) Å | µ = 1.14 mm−1 |
b = 15.2593 (18) Å | T = 293 K |
c = 21.581 (2) Å | 0.48 × 0.24 × 0.14 mm |
Siemens SMART CCD diffractometer | 2927 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1689 reflections with I > 2σ(I) |
Tmin = 0.874, Tmax = 1.000 | Rint = 0.073 |
5908 measured reflections |
R[F2 > 2σ(F2)] = 0.065 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.141 | Δρmax = 0.71 e Å−3 |
S = 1.01 | Δρmin = −0.33 e Å−3 |
2927 reflections | Absolute structure: Flack (1983), 876 Friedel pairs |
191 parameters | Absolute structure parameter: 0.31 (2) |
9 restraints |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cu1 | 0.16689 (10) | 0.53883 (4) | 0.34904 (2) | 0.03936 (14) | |
O21 | 0.5303 (6) | 0.5146 (3) | 0.45248 (14) | 0.0864 (16) | |
O22 | 0.1645 (6) | 0.49792 (18) | 0.43385 (11) | 0.0459 (10) | |
O23 | −0.0356 (5) | 0.4486 (3) | 0.74787 (12) | 0.0625 (12) | |
O24 | 0.3310 (6) | 0.42383 (19) | 0.76355 (11) | 0.0486 (10) | |
C21 | 0.1555 (9) | 0.4372 (3) | 0.72974 (17) | 0.0406 (15) | |
C22 | 0.2054 (7) | 0.4467 (3) | 0.66137 (15) | 0.0368 (14) | |
C23 | 0.4192 (7) | 0.4528 (5) | 0.63920 (18) | 0.068 (2) | |
H23A | 0.5386 | 0.4453 | 0.6662 | 0.082* | |
C24 | 0.4604 (9) | 0.4698 (5) | 0.5775 (2) | 0.090 (2) | |
H24A | 0.6068 | 0.4770 | 0.5640 | 0.107* | |
C25 | 0.2899 (8) | 0.4763 (3) | 0.53580 (16) | 0.0410 (15) | |
C26 | 0.0789 (7) | 0.4670 (4) | 0.55662 (18) | 0.0547 (17) | |
H26A | −0.0401 | 0.4706 | 0.5291 | 0.066* | |
C27 | 0.0384 (8) | 0.4517 (4) | 0.62017 (18) | 0.0632 (19) | |
H27A | −0.1079 | 0.4449 | 0.6338 | 0.076* | |
C28 | 0.3415 (11) | 0.4975 (3) | 0.46790 (19) | 0.0523 (17) | |
N11 | 0.1812 (5) | 0.41556 (16) | 0.31642 (10) | 0.0500 (9) | |
C11 | 0.3632 (5) | 0.3621 (2) | 0.32926 (15) | 0.0810 (16) | |
H11A | 0.4814 | 0.3834 | 0.3528 | 0.097* | |
C12 | 0.3685 (8) | 0.2766 (2) | 0.3070 (2) | 0.103 (2) | |
H12A | 0.4903 | 0.2408 | 0.3156 | 0.124* | |
C13 | 0.1918 (9) | 0.24467 (19) | 0.27188 (19) | 0.111 (2) | |
H13A | 0.1953 | 0.1875 | 0.2570 | 0.133* | |
C14 | 0.0097 (8) | 0.2982 (2) | 0.25904 (18) | 0.128 (2) | |
H14A | −0.1085 | 0.2768 | 0.2355 | 0.154* | |
C15 | 0.0044 (6) | 0.3836 (2) | 0.28131 (15) | 0.0891 (17) | |
H15A | −0.1173 | 0.4194 | 0.2727 | 0.107* | |
N31 | 0.2070 (5) | 0.66163 (17) | 0.37881 (11) | 0.0500 (9) | |
C31 | 0.3862 (5) | 0.7127 (2) | 0.35951 (16) | 0.0810 (16) | |
H31A | 0.4865 | 0.6908 | 0.3305 | 0.097* | |
C32 | 0.4155 (7) | 0.7964 (2) | 0.3836 (2) | 0.103 (2) | |
H32A | 0.5354 | 0.8305 | 0.3707 | 0.124* | |
C33 | 0.2655 (9) | 0.8290 (2) | 0.4270 (2) | 0.111 (2) | |
H33A | 0.2851 | 0.8850 | 0.4431 | 0.133* | |
C34 | 0.0863 (8) | 0.7780 (2) | 0.44630 (18) | 0.128 (2) | |
H34A | −0.0140 | 0.7999 | 0.4753 | 0.154* | |
C35 | 0.0571 (6) | 0.6943 (2) | 0.42221 (15) | 0.0891 (17) | |
H35A | −0.0628 | 0.6602 | 0.4351 | 0.107* | |
O1W | −0.2068 (4) | 0.54786 (18) | 0.35159 (9) | 0.0553 (10) | |
H1WA | −0.2573 (15) | 0.5095 (3) | 0.37645 (16) | 0.083* | |
H1WB | −0.2802 (11) | 0.5393 (6) | 0.31842 (15) | 0.083* | |
O2W | 0.026 (4) | 0.2549 (17) | 0.4836 (10) | 0.178 (5) | 0.25 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0449 (3) | 0.0560 (3) | 0.01714 (19) | 0.0003 (4) | −0.0009 (3) | 0.0010 (3) |
O21 | 0.040 (2) | 0.178 (4) | 0.0409 (18) | −0.022 (3) | 0.0112 (19) | 0.033 (2) |
O22 | 0.050 (2) | 0.068 (2) | 0.0196 (13) | 0.0003 (19) | 0.0030 (19) | 0.0028 (13) |
O23 | 0.034 (2) | 0.126 (3) | 0.0277 (15) | −0.010 (3) | 0.0127 (16) | 0.005 (2) |
O24 | 0.047 (2) | 0.079 (2) | 0.0201 (14) | 0.000 (2) | −0.0019 (19) | 0.0022 (14) |
C21 | 0.042 (3) | 0.053 (3) | 0.027 (2) | −0.025 (3) | −0.007 (3) | −0.0031 (19) |
C22 | 0.037 (3) | 0.058 (3) | 0.0153 (19) | 0.004 (3) | −0.004 (2) | −0.004 (2) |
C23 | 0.021 (3) | 0.162 (5) | 0.022 (2) | −0.006 (4) | −0.008 (2) | 0.013 (3) |
C24 | 0.034 (3) | 0.206 (7) | 0.029 (2) | 0.004 (5) | 0.004 (3) | 0.028 (4) |
C25 | 0.038 (3) | 0.068 (3) | 0.0175 (19) | 0.006 (3) | −0.003 (2) | 0.006 (2) |
C26 | 0.028 (3) | 0.117 (4) | 0.019 (2) | −0.002 (3) | 0.000 (2) | 0.003 (3) |
C27 | 0.026 (3) | 0.133 (5) | 0.030 (2) | −0.001 (4) | 0.007 (2) | −0.005 (3) |
C28 | 0.054 (3) | 0.076 (4) | 0.028 (2) | −0.006 (3) | 0.001 (3) | 0.005 (2) |
N11 | 0.0537 (19) | 0.0574 (18) | 0.0388 (13) | 0.0086 (17) | −0.0068 (17) | 0.0085 (12) |
C11 | 0.084 (3) | 0.068 (3) | 0.091 (3) | −0.009 (3) | −0.012 (3) | −0.002 (2) |
C12 | 0.115 (5) | 0.052 (3) | 0.143 (4) | −0.015 (3) | 0.010 (3) | −0.016 (3) |
C13 | 0.144 (5) | 0.071 (3) | 0.118 (3) | −0.002 (3) | 0.004 (4) | −0.040 (3) |
C14 | 0.140 (5) | 0.105 (4) | 0.140 (4) | 0.009 (4) | 0.018 (4) | −0.062 (3) |
C15 | 0.093 (4) | 0.096 (4) | 0.078 (3) | 0.015 (3) | −0.004 (3) | −0.030 (2) |
N31 | 0.0537 (19) | 0.0574 (18) | 0.0388 (13) | 0.0086 (17) | −0.0068 (17) | 0.0085 (12) |
C31 | 0.084 (3) | 0.068 (3) | 0.091 (3) | −0.009 (3) | −0.012 (3) | −0.002 (2) |
C32 | 0.115 (5) | 0.052 (3) | 0.143 (4) | −0.015 (3) | 0.010 (3) | −0.016 (3) |
C33 | 0.144 (5) | 0.071 (3) | 0.118 (3) | −0.002 (3) | 0.004 (4) | −0.040 (3) |
C34 | 0.140 (5) | 0.105 (4) | 0.140 (4) | 0.009 (4) | 0.018 (4) | −0.062 (3) |
C35 | 0.093 (4) | 0.096 (4) | 0.078 (3) | 0.015 (3) | −0.004 (3) | −0.030 (2) |
O1W | 0.051 (2) | 0.086 (2) | 0.0287 (13) | −0.003 (2) | −0.0029 (19) | 0.008 (2) |
O2W | 0.193 (7) | 0.164 (7) | 0.178 (7) | −0.005 (6) | −0.013 (6) | −0.022 (6) |
Cu1—O24i | 1.931 (2) | N11—C15 | 1.3900 |
Cu1—O22 | 1.934 (2) | C11—C12 | 1.3900 |
Cu1—N31 | 1.996 (3) | C11—H11A | 0.9300 |
Cu1—N11 | 2.010 (3) | C12—C13 | 1.3900 |
Cu1—O1W | 2.243 (3) | C12—H12A | 0.9300 |
O21—C28 | 1.208 (7) | C13—C14 | 1.3900 |
O22—C28 | 1.290 (6) | C13—H13A | 0.9300 |
O23—C21 | 1.222 (6) | C14—C15 | 1.3900 |
O24—C21 | 1.296 (6) | C14—H14A | 0.9300 |
O24—Cu1ii | 1.931 (2) | C15—H15A | 0.9300 |
C21—C22 | 1.513 (5) | N31—C31 | 1.3900 |
C22—C27 | 1.341 (6) | N31—C35 | 1.3900 |
C22—C23 | 1.370 (6) | C31—C32 | 1.3900 |
C23—C24 | 1.380 (6) | C31—H31A | 0.9300 |
C23—H23A | 0.9300 | C32—C33 | 1.3900 |
C24—C25 | 1.364 (6) | C32—H32A | 0.9300 |
C24—H24A | 0.9300 | C33—C34 | 1.3900 |
C25—C26 | 1.349 (6) | C33—H33A | 0.9300 |
C25—C28 | 1.532 (6) | C34—C35 | 1.3900 |
C26—C27 | 1.412 (6) | C34—H34A | 0.9300 |
C26—H26A | 0.9300 | C35—H35A | 0.9300 |
C27—H27A | 0.9300 | O1W—H1WA | 0.850 (4) |
N11—C11 | 1.3900 | O1W—H1WB | 0.850 (4) |
O24i—Cu1—O22 | 178.33 (13) | C15—N11—Cu1 | 119.12 (15) |
O24i—Cu1—N31 | 91.70 (12) | C12—C11—N11 | 120.0 |
O22—Cu1—N31 | 89.96 (11) | C12—C11—H11A | 120.0 |
O24i—Cu1—N11 | 86.63 (11) | N11—C11—H11A | 120.0 |
O22—Cu1—N11 | 91.70 (11) | C11—C12—C13 | 120.0 |
N31—Cu1—N11 | 170.51 (13) | C11—C12—H12A | 120.0 |
O24i—Cu1—O1W | 90.68 (12) | C13—C12—H12A | 120.0 |
O22—Cu1—O1W | 89.38 (12) | C14—C13—C12 | 120.0 |
N31—Cu1—O1W | 93.13 (11) | C14—C13—H13A | 120.0 |
N11—Cu1—O1W | 96.23 (12) | C12—C13—H13A | 120.0 |
C28—O22—Cu1 | 122.3 (3) | C15—C14—C13 | 120.0 |
C21—O24—Cu1ii | 119.8 (3) | C15—C14—H14A | 120.0 |
O23—C21—O24 | 127.0 (4) | C13—C14—H14A | 120.0 |
O23—C21—C22 | 118.9 (4) | C14—C15—N11 | 120.0 |
O24—C21—C22 | 113.8 (4) | C14—C15—H15A | 120.0 |
C27—C22—C23 | 117.5 (4) | N11—C15—H15A | 120.0 |
C27—C22—C21 | 120.3 (4) | C31—N31—C35 | 120.0 |
C23—C22—C21 | 122.1 (4) | C31—N31—Cu1 | 121.51 (15) |
C22—C23—C24 | 121.2 (4) | C35—N31—Cu1 | 118.41 (15) |
C22—C23—H23A | 119.4 | C32—C31—N31 | 120.0 |
C24—C23—H23A | 119.4 | C32—C31—H31A | 120.0 |
C25—C24—C23 | 121.1 (5) | N31—C31—H31A | 120.0 |
C25—C24—H24A | 119.5 | C31—C32—C33 | 120.0 |
C23—C24—H24A | 119.5 | C31—C32—H32A | 120.0 |
C26—C25—C24 | 118.3 (4) | C33—C32—H32A | 120.0 |
C26—C25—C28 | 122.0 (4) | C32—C33—C34 | 120.0 |
C24—C25—C28 | 119.7 (4) | C32—C33—H33A | 120.0 |
C25—C26—C27 | 120.1 (4) | C34—C33—H33A | 120.0 |
C25—C26—H26A | 119.9 | C33—C34—C35 | 120.0 |
C27—C26—H26A | 119.9 | C33—C34—H34A | 120.0 |
C22—C27—C26 | 121.7 (4) | C35—C34—H34A | 120.0 |
C22—C27—H27A | 119.2 | C34—C35—N31 | 120.0 |
C26—C27—H27A | 119.2 | C34—C35—H35A | 120.0 |
O21—C28—O22 | 127.7 (4) | N31—C35—H35A | 120.0 |
O21—C28—C25 | 119.9 (5) | Cu1—O1W—H1WA | 109.2 (7) |
O22—C28—C25 | 112.4 (5) | Cu1—O1W—H1WB | 119.1 (5) |
C11—N11—C15 | 120.0 | H1WA—O1W—H1WB | 103.9 (6) |
C11—N11—Cu1 | 120.88 (15) |
Symmetry codes: (i) −x+1/2, −y+1, z−1/2; (ii) −x+1/2, −y+1, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O21iii | 0.85 (1) | 2.08 (1) | 2.735 (4) | 134 (1) |
O1W—H1WB···O23iv | 0.85 (1) | 1.89 (1) | 2.719 (3) | 165 (1) |
Symmetry codes: (iii) x−1, y, z; (iv) −x−1/2, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C8H4O4)(C5H5N)2(H2O)]·0.25H2O |
Mr | 408.37 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 5.9896 (7), 15.2593 (18), 21.581 (2) |
V (Å3) | 1972.4 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.14 |
Crystal size (mm) | 0.48 × 0.24 × 0.14 |
Data collection | |
Diffractometer | Siemens SMART CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.874, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5908, 2927, 1689 |
Rint | 0.073 |
(sin θ/λ)max (Å−1) | 0.597 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.141, 1.01 |
No. of reflections | 2927 |
No. of parameters | 191 |
No. of restraints | 9 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.71, −0.33 |
Absolute structure | Flack (1983), 876 Friedel pairs |
Absolute structure parameter | 0.31 (2) |
Computer programs: SMART (Siemens, 1996), SAINT (Siemens, 1994), XPREP (Siemens, 1995), SHELXTL (Siemens, 1995).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O21i | 0.850 (4) | 2.078 (7) | 2.735 (4) | 133.7 (6) |
O1W—H1WB···O23ii | 0.850 (4) | 1.889 (5) | 2.719 (3) | 164.9 (10) |
Symmetry codes: (i) x−1, y, z; (ii) −x−1/2, −y+1, z−1/2. |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- If you have already subscribed, you may need to register
Many interesting in situ reactions such as hydrolysis (Lin et al., 1998; Evans et al., 1999; Lin et al., 2000; Sun et al., 2001), redox (Xiong et al., 1998; Ma et al., 1999; Evans et al., 2000; Tao et al., 2002), and dehydration (Gutschke et al., 2000) can occur under solvothermal environment. It has been found that cyano substituted aromatic compound can be hydrolyzed and the cyano group would be changed to carboxylic acid. For example, Lin's group reported that 3-cyanopyridine or 4-cyanopyridine undergoes a hydrolysis reaction to form 3-pyridinecarboxylic acid (Lin et al., 2000) and 4-pyridinecarboxylic acid (Evans et al., 1999), respectively; Hong's group revealed that the hydrolysis of 1,4-dicyanobenzene gives rise to 1,4-benzenedicarboxylate acid (Sun et al., 2001). The present example shows that 4-cyanobenzoic acid also undergoes a similar hydrolysis procedure.
The hydrothermal reaction of 4-cyanobenzoic acid, CuO, pyridine (py) and water under weak basified conditions gave rise to the title compound (1) as blue prismatic crystals, which were very easy to be efflorescent and become opaque when out of the mother liquid. The IR spectrum of (1) exhibits strong bands at 1605 and 1390 cm-1, which are attributed to the Vas and Vas peaks of COO- group, respectively. The absence of peaks in the range of 2240—2220 cm-1 shows that there exists no cyano group in (1).
A single-crystal X-ray diffraction analysis revealed that compund (1) has a similar 1-D chain structure as that of CuL1(py)2(H2O).py.H2O (L1 = 1,4-benzenedicarboxylate ligand; Ohmura et al., 2003). The crystallographically independent unit of (1) consists of one L1 ligand, two py ligands, one copper(II) atom, one coordination water molecule and hemisemi lattice water molecule. As show in Fig. 1, each copper(II) atom is almost in a square-based pyramidal environment, of which the axial position is occupied by coordination water molecule O1w (Cu1—O1w = 2.243 (3) Å) and the square plane is defined by two nitrogen atoms from two py ligands (Cu—N = 1.996 (3) and 2.010 (3) Å), two oxygen atoms from two L1 ligands (Cu—O = 1.931 (2) and 1.934 (2) Å) with an O24—Cu1—O22 bond angle of 178.3 (1) °. The bond angles of O1w—Cu1—X (X = the atoms in the square plane) vary from 89.4 (1) to 96.2 (1) °, which indicates that O1w is approximately perpendicular to the square plane. In this way, each L1 ligand links two symmetry-related copper(II) atoms (Cu···Cu, ca 10.901 Å) into a 1-D chain along the c direction. Compound 1 crystallizes in space group P212121, and the 1-D chain perfectly lies in the 21 axis. Hence, the 1-D chain is in a helical mode as the case found in the structure of [Cu(L2)(NO3)2]8 (L2 = 2,5-bis(2-pyridyl)-1,3,4-oxodiazole) (Bu et al., 2002). To the best of our knowledge, 1-D helical chiral compound with bridging L1 ligands has only a reported example in the literature (Cutland et al., 2001).
Considering the short contacts shows that the neighboring parallel chains are interconnected by O—H···O hydrogen bonds [O1W···O21i = 2.735 (4) Å, O1w—Hw1···O21i = 133.7 (6) °; O1W···O23ii = 2.719 (3) Å, O1w—Hw2···O23ii = 165 (1)°; (i) x - 1, y, z; (ii) -0.5 - x, 1 - y, -1/2 + z. (Table 1)] to form a layer (Fig. 1). Each of these hydrogen bonds is established from an axially coordinated water molecule to one of the carboxylate group of a neighboring L1 ligand. The distance of two adjacent chains agrees with the Cu1···Cu1a separation of ca 5.990 Å, which is shorter than the L1-bridged Cu···Cu separation. However, considering the short contacts between two adjacent layers, only van der Waals interactions can be found (Fig. 2). The layers are crosswise arranged along the b direction to form a self-complementary structure (Seo et al., 2000) that apparently stabilizes the whole crystal structure. Uncoordinated water molecules locate in the channels along the a direction.