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The title compound, C12H18N2O3, was synthesized in 87.2% yield by condensation of L-leucine methyl ester with 2-trichloro­acetyl­pyrrole at room temperature. There are two chemically equivalent and crystallographically independent molecules in the asymmetric unit. In the crystal structure, inter­molecular N—H...O hydrogen-bonding inter­actions link the mol­ecules into extended chains parallel to the c axis.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805032393/ac6205sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805032393/ac6205Isup2.hkl
Contains datablock I

CCDC reference: 289622

Key indicators

  • Single-crystal X-ray study
  • T = 298 K
  • Mean [sigma](C-C) = 0.004 Å
  • R factor = 0.042
  • wR factor = 0.120
  • Data-to-parameter ratio = 10.5

checkCIF/PLATON results

No syntax errors found



Alert level A PLAT707_ALERT_1_A D...A Calc 16.242(9), Rep 3.054(3), Dev.. 1465.33 Sigma N3 -O2 1.555 2.564 PLAT726_ALERT_1_A H...A Calc 17.05000, Rep 2.347(3) Dev... 14.70 Ang. H3 -O2 1.555 2.564 PLAT728_ALERT_1_A D-H..A Calc 20.00, Rep 139.8(3) Dev... 119.80 Deg. N3 -H3 -O2 1.555 1.555 2.564
Alert level B PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C20
Alert level C STRVA01_ALERT_4_C Flack test results are meaningless. From the CIF: _refine_ls_abs_structure_Flack 0.000 From the CIF: _refine_ls_abs_structure_Flack_su 10.000 PLAT032_ALERT_4_C Std. Uncertainty in Flack Parameter too High ... 10.00 PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT150_ALERT_1_C Volume as Calculated Differs from that Given ... 2688.00 Ang-3 PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.66 Ratio PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.27 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.12 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.81 Ratio PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C8 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C23 PLAT340_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 5 PLAT737_ALERT_1_C D...A Calc 16.242(9), Rep 3.054(3) ...... 3.00 su-Rat N3 -O2 1.555 2.564 PLAT756_ALERT_4_C H...A Calc 2.23000, Rep 2.228(3) ...... Senseless su H1 -O5 1.555 1.555 PLAT756_ALERT_4_C H...A Calc 2.14000, Rep 2.139(3) ...... Senseless su H2 -O4 1.555 2.564 PLAT756_ALERT_4_C H...A Calc 17.05000, Rep 2.347(3) ...... Senseless su H3 -O2 1.555 2.564 PLAT756_ALERT_4_C H...A Calc 2.04000, Rep 2.045(3) ...... Senseless su H4 -O1 1.555 1.555 PLAT758_ALERT_4_C D-H..A Calc 170.00, Rep 169.8(3) ...... Senseless su N1 -H1 -O5 1.555 1.555 1.555 PLAT758_ALERT_4_C D-H..A Calc 158.00, Rep 158.1(3) ...... Senseless su N4 -H4 -O1 1.555 1.555 1.555 PLAT850_ALERT_2_C Check Flack Parameter Exact Value 0.00 and su .. 10.00
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.06 From the CIF: _reflns_number_total 3301 Count of symmetry unique reflns 3331 Completeness (_total/calc) 99.10% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no
3 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 20 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 6 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 10 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: SMART (Bruker, 1999); cell refinement: SAINT-Plus (Bruker, 1999); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Bruker, 1997); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

(S)-Methyl 4-methyl-2-(1H-pyrrole-2-carboxamido)pentanoate top
Crystal data top
C12H18N2O3Dx = 1.178 Mg m3
Mr = 238.28Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 941 reflections
a = 8.920 (4) Åθ = 2.5–21.9°
b = 16.282 (8) ŵ = 0.09 mm1
c = 18.504 (9) ÅT = 298 K
V = 2688 (2) Å3Block, colorless
Z = 80.50 × 0.26 × 0.18 mm
F(000) = 1024
Data collection top
Bruker SMART 1K CCD area-detector
diffractometer
3301 independent reflections
Radiation source: fine-focus sealed tube2196 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 27.1°, θmin = 2.5°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1110
Tmin = 0.974, Tmax = 0.985k = 1820
14949 measured reflectionsl = 2123
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.120 w = 1/[σ2(Fo2) + (0.0622P)2 + 0.3014P]
where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3301 reflectionsΔρmax = 0.17 e Å3
314 parametersΔρmin = 0.17 e Å3
0 restraintsAbsolute structure: Flack (1983)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0 (10)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.3778 (2)0.57496 (13)0.58826 (9)0.0624 (5)
O20.5896 (3)0.54643 (14)0.43995 (13)0.0750 (6)
O30.7049 (2)0.46445 (16)0.51887 (17)0.0944 (9)
O40.3196 (3)0.55723 (12)0.85733 (10)0.0679 (6)
O50.2675 (3)0.73630 (14)0.70795 (13)0.0776 (6)
O60.4381 (3)0.79811 (12)0.77676 (16)0.0906 (8)
N10.1518 (3)0.68715 (15)0.55732 (15)0.0660 (7)
H10.18790.69440.59990.079*
N20.3164 (2)0.49524 (14)0.49418 (12)0.0509 (6)
H20.25040.48180.46240.061*
N30.1223 (3)0.43291 (14)0.81157 (13)0.0643 (7)
H30.10740.44530.85620.077*
N40.3861 (3)0.58430 (13)0.74260 (11)0.0521 (6)
H40.38440.56760.69850.063*
C10.1866 (3)0.62314 (16)0.51233 (14)0.0508 (6)
C20.1076 (4)0.63459 (19)0.45032 (16)0.0637 (8)
H2A0.10990.60080.40980.076*
C30.0224 (4)0.7061 (2)0.4580 (2)0.0818 (10)
H3A0.04260.72840.42400.098*
C40.0525 (4)0.7368 (2)0.5245 (2)0.0845 (11)
H4A0.01140.78430.54410.101*
C50.2983 (3)0.56371 (16)0.53443 (13)0.0477 (6)
C60.4475 (3)0.44499 (16)0.50510 (15)0.0514 (6)
H60.45410.43020.55640.062*
C70.4417 (3)0.36659 (16)0.46033 (15)0.0562 (7)
H7A0.53860.33980.46370.067*
H7B0.42660.38170.41010.067*
C80.3211 (3)0.30440 (17)0.48120 (16)0.0602 (8)
H80.22380.33230.48180.072*
C90.3155 (5)0.2362 (2)0.4257 (2)0.0909 (12)
H9A0.40940.20740.42540.136*
H9B0.29730.25920.37870.136*
H9C0.23630.19870.43780.136*
C100.3496 (5)0.2682 (3)0.5553 (2)0.0939 (12)
H10A0.44850.24500.55680.141*
H10B0.27710.22600.56490.141*
H10C0.34120.31050.59120.141*
C110.5869 (3)0.49241 (19)0.48417 (18)0.0605 (8)
C120.8494 (4)0.5019 (3)0.4993 (3)0.1268 (19)
H12A0.87830.48390.45190.190*
H12B0.92430.48560.53370.190*
H12C0.83980.56060.49960.190*
C130.2198 (3)0.47288 (16)0.76628 (14)0.0512 (7)
C140.2100 (4)0.4341 (2)0.70168 (18)0.0769 (9)
H140.26340.44740.66020.092*
C150.1061 (5)0.3708 (2)0.7082 (2)0.0913 (11)
H150.07810.33440.67190.110*
C160.0535 (4)0.3715 (2)0.7759 (2)0.0785 (10)
H160.01780.33580.79500.094*
C170.3105 (3)0.54096 (15)0.79258 (14)0.0480 (6)
C180.4704 (3)0.65785 (15)0.75956 (15)0.0513 (7)
H180.49570.65700.81110.062*
C190.6155 (3)0.66454 (17)0.71609 (17)0.0612 (7)
H19A0.58970.66650.66520.073*
H19B0.66320.71630.72810.073*
C200.7287 (4)0.5965 (2)0.7271 (2)0.0742 (9)
H200.68380.54510.71000.089*
C210.8666 (5)0.6139 (4)0.6809 (3)0.150 (2)
H21A0.92370.65750.70240.225*
H21B0.83560.62990.63320.225*
H21C0.92730.56540.67790.225*
C220.7721 (7)0.5851 (4)0.8033 (2)0.157 (3)
H22A0.84070.53980.80710.236*
H22B0.68440.57380.83170.236*
H22C0.81950.63410.82080.236*
C230.3784 (4)0.73326 (16)0.74453 (15)0.0570 (7)
C240.3699 (5)0.8775 (2)0.7626 (3)0.1181 (17)
H24A0.35000.88280.71190.177*
H24B0.43700.92040.77770.177*
H24C0.27760.88190.78900.177*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0667 (12)0.0752 (12)0.0451 (10)0.0026 (12)0.0039 (10)0.0101 (10)
O20.0781 (15)0.0708 (13)0.0760 (14)0.0155 (12)0.0070 (13)0.0101 (12)
O30.0529 (13)0.0861 (16)0.144 (2)0.0094 (12)0.0202 (15)0.0242 (16)
O40.0894 (15)0.0703 (13)0.0441 (11)0.0217 (13)0.0078 (10)0.0002 (9)
O50.0761 (15)0.0736 (14)0.0831 (15)0.0146 (12)0.0180 (13)0.0089 (12)
O60.0783 (16)0.0481 (11)0.145 (2)0.0027 (12)0.0233 (16)0.0101 (14)
N10.0682 (16)0.0603 (14)0.0695 (16)0.0046 (14)0.0030 (13)0.0091 (13)
N20.0506 (13)0.0531 (13)0.0491 (13)0.0015 (11)0.0074 (10)0.0060 (11)
N30.0674 (15)0.0610 (14)0.0646 (15)0.0159 (14)0.0010 (13)0.0045 (12)
N40.0676 (15)0.0489 (12)0.0399 (11)0.0092 (12)0.0010 (11)0.0016 (10)
C10.0511 (15)0.0477 (14)0.0536 (16)0.0046 (13)0.0095 (13)0.0000 (12)
C20.0641 (19)0.0695 (19)0.0574 (17)0.0049 (16)0.0001 (15)0.0059 (15)
C30.079 (2)0.083 (2)0.083 (2)0.021 (2)0.0016 (19)0.021 (2)
C40.088 (2)0.0621 (19)0.104 (3)0.020 (2)0.015 (2)0.007 (2)
C50.0487 (14)0.0530 (15)0.0415 (13)0.0058 (13)0.0049 (12)0.0011 (12)
C60.0510 (15)0.0529 (15)0.0502 (15)0.0002 (13)0.0010 (12)0.0021 (12)
C70.0526 (16)0.0570 (15)0.0590 (16)0.0028 (14)0.0085 (14)0.0002 (14)
C80.0547 (16)0.0540 (16)0.0720 (19)0.0023 (14)0.0055 (15)0.0003 (15)
C90.112 (3)0.070 (2)0.091 (3)0.024 (2)0.009 (2)0.016 (2)
C100.109 (3)0.091 (3)0.082 (2)0.033 (2)0.004 (2)0.014 (2)
C110.0537 (17)0.0548 (17)0.073 (2)0.0023 (14)0.0029 (15)0.0039 (16)
C120.054 (2)0.138 (4)0.188 (5)0.032 (3)0.006 (3)0.006 (4)
C130.0530 (16)0.0498 (14)0.0507 (16)0.0019 (13)0.0007 (13)0.0042 (12)
C140.078 (2)0.084 (2)0.069 (2)0.029 (2)0.0095 (18)0.0122 (18)
C150.099 (3)0.090 (2)0.085 (3)0.034 (2)0.003 (2)0.024 (2)
C160.071 (2)0.0688 (19)0.096 (3)0.0276 (19)0.001 (2)0.0043 (19)
C170.0515 (15)0.0455 (13)0.0469 (15)0.0029 (12)0.0021 (13)0.0031 (12)
C180.0602 (17)0.0473 (14)0.0465 (14)0.0081 (14)0.0023 (13)0.0006 (12)
C190.0612 (17)0.0576 (16)0.0648 (17)0.0035 (15)0.0009 (15)0.0091 (14)
C200.068 (2)0.0604 (19)0.094 (2)0.0003 (17)0.0008 (19)0.0073 (18)
C210.088 (3)0.174 (5)0.188 (6)0.031 (4)0.046 (4)0.004 (5)
C220.160 (5)0.200 (6)0.111 (4)0.104 (5)0.056 (4)0.003 (4)
C230.0569 (17)0.0518 (16)0.0623 (17)0.0050 (15)0.0028 (15)0.0001 (14)
C240.105 (3)0.0450 (17)0.204 (5)0.009 (2)0.010 (4)0.009 (3)
Geometric parameters (Å, º) top
O1—C51.236 (3)C8—H80.9800
O2—C111.202 (4)C9—H9A0.9600
O3—C111.314 (4)C9—H9B0.9600
O3—C121.471 (4)C9—H9C0.9600
O4—C171.230 (3)C10—H10A0.9600
O5—C231.200 (4)C10—H10B0.9600
O6—C231.324 (3)C10—H10C0.9600
O6—C241.453 (4)C12—H12A0.9600
N1—C41.345 (4)C12—H12B0.9600
N1—C11.369 (4)C12—H12C0.9600
N1—H10.8600C13—C141.355 (4)
N2—C51.350 (3)C13—C171.456 (4)
N2—C61.442 (3)C14—C151.391 (5)
N2—H20.8600C14—H140.9300
N3—C161.346 (4)C15—C161.338 (5)
N3—C131.372 (4)C15—H150.9300
N3—H30.8600C16—H160.9300
N4—C171.345 (3)C18—C231.503 (4)
N4—C181.448 (3)C18—C191.528 (4)
N4—H40.8600C18—H180.9800
C1—C21.359 (4)C19—C201.513 (4)
C1—C51.448 (4)C19—H19A0.9700
C2—C31.398 (5)C19—H19B0.9700
C2—H2A0.9300C20—C221.474 (5)
C3—C41.355 (5)C20—C211.525 (6)
C3—H3A0.9300C20—H200.9800
C4—H4A0.9300C21—H21A0.9600
C6—C111.514 (4)C21—H21B0.9600
C6—C71.523 (4)C21—H21C0.9600
C6—H60.9800C22—H22A0.9600
C7—C81.527 (4)C22—H22B0.9600
C7—H7A0.9700C22—H22C0.9600
C7—H7B0.9700C24—H24A0.9600
C8—C101.514 (5)C24—H24B0.9600
C8—C91.514 (4)C24—H24C0.9600
C11—O3—C12116.0 (3)O3—C11—C6110.9 (3)
C23—O6—C24117.4 (3)O3—C12—H12A109.5
C4—N1—C1109.4 (3)O3—C12—H12B109.5
C4—N1—H1125.3H12A—C12—H12B109.5
C1—N1—H1125.3O3—C12—H12C109.5
C5—N2—C6119.2 (2)H12A—C12—H12C109.5
C5—N2—H2120.4H12B—C12—H12C109.5
C6—N2—H2120.4C14—C13—N3106.1 (3)
C16—N3—C13110.0 (3)C14—C13—C17133.3 (3)
C16—N3—H3125.0N3—C13—C17120.6 (2)
C13—N3—H3125.0C13—C14—C15108.2 (3)
C17—N4—C18123.1 (2)C13—C14—H14125.9
C17—N4—H4118.5C15—C14—H14125.9
C18—N4—H4118.5C16—C15—C14108.0 (3)
C2—C1—N1107.0 (3)C16—C15—H15126.0
C2—C1—C5133.4 (3)C14—C15—H15126.0
N1—C1—C5119.5 (3)C15—C16—N3107.8 (3)
C1—C2—C3108.0 (3)C15—C16—H16126.1
C1—C2—H2A126.0N3—C16—H16126.1
C3—C2—H2A126.0O4—C17—N4121.6 (3)
C4—C3—C2107.0 (3)O4—C17—C13121.7 (2)
C4—C3—H3A126.5N4—C17—C13116.6 (2)
C2—C3—H3A126.5N4—C18—C23110.6 (2)
N1—C4—C3108.6 (3)N4—C18—C19112.6 (2)
N1—C4—H4A125.7C23—C18—C19107.9 (2)
C3—C4—H4A125.7N4—C18—H18108.5
O1—C5—N2119.9 (3)C23—C18—H18108.5
O1—C5—C1121.6 (2)C19—C18—H18108.5
N2—C5—C1118.5 (2)C20—C19—C18116.2 (2)
N2—C6—C11109.9 (2)C20—C19—H19A108.2
N2—C6—C7111.8 (2)C18—C19—H19A108.2
C11—C6—C7108.4 (2)C20—C19—H19B108.2
N2—C6—H6108.9C18—C19—H19B108.2
C11—C6—H6108.9H19A—C19—H19B107.4
C7—C6—H6108.9C22—C20—C19113.4 (3)
C6—C7—C8116.3 (2)C22—C20—C21110.4 (4)
C6—C7—H7A108.2C19—C20—C21109.0 (3)
C8—C7—H7A108.2C22—C20—H20108.0
C6—C7—H7B108.2C19—C20—H20108.0
C8—C7—H7B108.2C21—C20—H20108.0
H7A—C7—H7B107.4C20—C21—H21A109.5
C10—C8—C9109.5 (3)C20—C21—H21B109.5
C10—C8—C7111.7 (3)H21A—C21—H21B109.5
C9—C8—C7109.8 (3)C20—C21—H21C109.5
C10—C8—H8108.6H21A—C21—H21C109.5
C9—C8—H8108.6H21B—C21—H21C109.5
C7—C8—H8108.6C20—C22—H22A109.5
C8—C9—H9A109.5C20—C22—H22B109.5
C8—C9—H9B109.5H22A—C22—H22B109.5
H9A—C9—H9B109.5C20—C22—H22C109.5
C8—C9—H9C109.5H22A—C22—H22C109.5
H9A—C9—H9C109.5H22B—C22—H22C109.5
H9B—C9—H9C109.5O5—C23—O6123.6 (3)
C8—C10—H10A109.5O5—C23—C18126.0 (3)
C8—C10—H10B109.5O6—C23—C18110.4 (3)
H10A—C10—H10B109.5O6—C24—H24A109.5
C8—C10—H10C109.5O6—C24—H24B109.5
H10A—C10—H10C109.5H24A—C24—H24B109.5
H10B—C10—H10C109.5O6—C24—H24C109.5
O2—C11—O3124.8 (3)H24A—C24—H24C109.5
O2—C11—C6124.3 (3)H24B—C24—H24C109.5
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O50.862.23 (1)3.078 (3)170 (1)
N2—H2···O4i0.862.14 (1)2.935 (3)154 (1)
N3—H3···O2i0.862.35 (1)3.054 (3)140 (1)
N4—H4···O10.862.05 (1)2.861 (3)158 (1)
Symmetry code: (i) x+1/2, y+1, z1/2.
 

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