A concise and efficient synthesis of 6-benzimidazolyl-5-nitrosopyrimidines has been developed using Schiff base-type intermediates derived from
N4-(2-aminophenyl)-6-methoxy-5-nitrosopyrimidine-2,4-diamine. 6-Methoxy-
N4-{2-[(4-methylbenzylidene)amino]phenyl}-5-nitrosopyrimidine-2,4-diamine, (I), and
N4-{2-[(ethoxymethylidene)amino]phenyl}-6-methoxy-5-nitrosopyrimidine-2,4-diamine, (III), both crystallize from dimethyl sulfoxide solution as the 1:1 solvates C
19H
18N
6O
2·C
2H
6OS, (I
a), and C
14H
16N
6O
3·C
2H
6OS, (III
a), respectively. The interatomic distances in these intermediates indicate significant electronic polarization within the substituted pyrimidine system. In each of (I
a) and (III
a), intermolecular N—H
O hydrogen bonds generate centrosymmetric four-molecule aggregates. Oxidative ring closure of intermediate (I), effected using ammonium hexanitratocerate(IV), produced 4-methoxy-6-[2-(4-methylphenyl-1
H-benzimidazol-1-yl]-5-nitrosopyrimidin-2-amine, C
19H
16N
6O
2, (II) [Cobo
et al. (2018). Private communication (CCDC 1830889). CCDC, Cambridge, England], where the extent of electronic polarization is much less than in (I
a) and (III
a). A combination of N—H
N and C—H
O hydrogen bonds links the molecules of (II) into complex sheets.
Supporting information
CCDC references: 1842087; 1842086
For both structures, data collection: APEX3 (Bruker, 2016); cell refinement: SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015) and PLATON (Spek, 2009).
6-Methoxy-
N4-{2-[(4-methylbenzylidene)amino]phenyl}-5-nitrosopyrimidine-2,4-diamine dimethyl sulfoxide monosolvate (I)
top
Crystal data top
C19H18N6O2·C2H6OS | F(000) = 928 |
Mr = 440.52 | Dx = 1.372 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 10.801 (5) Å | Cell parameters from 4914 reflections |
b = 17.301 (8) Å | θ = 2.1–27.6° |
c = 11.777 (7) Å | µ = 0.19 mm−1 |
β = 104.28 (2)° | T = 100 K |
V = 2132.7 (19) Å3 | Block, green |
Z = 4 | 0.22 × 0.22 × 0.17 mm |
Data collection top
Bruker D8 Venture diffractometer | 4914 independent reflections |
Radiation source: INCOATEC high brilliance microfocus sealed tube | 3658 reflections with I > 2σ(I) |
Multilayer mirror monochromator | Rint = 0.066 |
φ and ω scans | θmax = 27.6°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | h = −13→14 |
Tmin = 0.818, Tmax = 0.969 | k = −22→22 |
20005 measured reflections | l = −15→15 |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.043 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0366P)2 + 0.9653P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
4914 reflections | Δρmax = 0.44 e Å−3 |
293 parameters | Δρmin = −0.41 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.63176 (14) | 0.44867 (8) | 0.44069 (13) | 0.0120 (3) | |
C2 | 0.70798 (17) | 0.49327 (9) | 0.39280 (16) | 0.0119 (4) | |
N3 | 0.67939 (14) | 0.52579 (8) | 0.28358 (13) | 0.0126 (3) | |
C4 | 0.56203 (17) | 0.51537 (9) | 0.22182 (15) | 0.0124 (4) | |
C5 | 0.46824 (17) | 0.47089 (10) | 0.26155 (15) | 0.0124 (4) | |
C6 | 0.51361 (17) | 0.43704 (9) | 0.37651 (15) | 0.0113 (4) | |
N21 | 0.82477 (15) | 0.50708 (9) | 0.45704 (15) | 0.0140 (3) | |
H21A | 0.879 (2) | 0.5321 (11) | 0.4269 (18) | 0.017* | |
H21B | 0.8523 (19) | 0.4849 (11) | 0.5261 (19) | 0.017* | |
O41 | 0.52485 (12) | 0.54582 (7) | 0.11541 (11) | 0.0164 (3) | |
C41 | 0.62018 (18) | 0.58875 (11) | 0.07361 (17) | 0.0204 (4) | |
H41C | 0.6879 | 0.5535 | 0.0639 | 0.031* | |
H41A | 0.6570 | 0.6290 | 0.1306 | 0.031* | |
H41B | 0.5801 | 0.6128 | −0.0019 | 0.031* | |
N51 | 0.34929 (15) | 0.46832 (9) | 0.18987 (14) | 0.0172 (3) | |
O51 | 0.26510 (12) | 0.42777 (7) | 0.22353 (12) | 0.0199 (3) | |
N61 | 0.43163 (15) | 0.39245 (8) | 0.41667 (13) | 0.0115 (3) | |
H61 | 0.359 (2) | 0.3896 (11) | 0.3682 (18) | 0.014* | |
C61 | 0.44691 (17) | 0.35231 (9) | 0.52304 (15) | 0.0113 (4) | |
C62 | 0.34263 (17) | 0.30489 (10) | 0.53073 (16) | 0.0129 (4) | |
C63 | 0.34837 (18) | 0.26217 (10) | 0.63204 (17) | 0.0164 (4) | |
H63 | 0.2799 | 0.2287 | 0.6361 | 0.020* | |
C64 | 0.45325 (18) | 0.26823 (10) | 0.72687 (17) | 0.0172 (4) | |
H64 | 0.4566 | 0.2394 | 0.7962 | 0.021* | |
C65 | 0.55336 (18) | 0.31665 (10) | 0.71999 (16) | 0.0153 (4) | |
H65 | 0.6243 | 0.3217 | 0.7858 | 0.018* | |
C66 | 0.55184 (17) | 0.35804 (10) | 0.61841 (16) | 0.0136 (4) | |
H66 | 0.6221 | 0.3900 | 0.6143 | 0.016* | |
N62 | 0.23880 (14) | 0.30157 (8) | 0.43151 (13) | 0.0142 (3) | |
C77 | 0.12606 (17) | 0.31075 (9) | 0.44571 (16) | 0.0132 (4) | |
H77 | 0.1149 | 0.3187 | 0.5224 | 0.016* | |
C71 | 0.01410 (17) | 0.30927 (9) | 0.34622 (16) | 0.0122 (4) | |
C72 | 0.02521 (18) | 0.28960 (10) | 0.23395 (16) | 0.0148 (4) | |
H72 | 0.1061 | 0.2753 | 0.2223 | 0.018* | |
C73 | −0.08009 (18) | 0.29075 (10) | 0.14038 (17) | 0.0165 (4) | |
H73 | −0.0709 | 0.2772 | 0.0647 | 0.020* | |
C74 | −0.20049 (18) | 0.31150 (10) | 0.15462 (17) | 0.0155 (4) | |
C75 | −0.21199 (17) | 0.32966 (10) | 0.26681 (16) | 0.0149 (4) | |
H75 | −0.2934 | 0.3428 | 0.2784 | 0.018* | |
C76 | −0.10657 (17) | 0.32890 (9) | 0.36166 (16) | 0.0132 (4) | |
H76 | −0.1161 | 0.3417 | 0.4375 | 0.016* | |
C78 | −0.31356 (19) | 0.31587 (11) | 0.05064 (18) | 0.0230 (4) | |
H78A | −0.3157 | 0.3667 | 0.0136 | 0.034* | |
H78C | −0.3923 | 0.3081 | 0.0764 | 0.034* | |
H78B | −0.3064 | 0.2756 | −0.0059 | 0.034* | |
S21 | 0.97174 (4) | 0.59113 (2) | 0.22222 (4) | 0.01328 (11) | |
O21 | 1.01515 (12) | 0.57943 (7) | 0.35309 (11) | 0.0185 (3) | |
C21 | 0.94880 (19) | 0.49656 (10) | 0.15963 (19) | 0.0211 (4) | |
H21C | 1.0290 | 0.4675 | 0.1826 | 0.032* | |
H21D | 0.9225 | 0.5007 | 0.0740 | 0.032* | |
H21E | 0.8824 | 0.4697 | 0.1879 | 0.032* | |
C22 | 1.11243 (18) | 0.61524 (10) | 0.17569 (18) | 0.0189 (4) | |
H22C | 1.1459 | 0.6649 | 0.2100 | 0.028* | |
H22D | 1.0915 | 0.6191 | 0.0900 | 0.028* | |
H22E | 1.1770 | 0.5749 | 0.2015 | 0.028* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0118 (8) | 0.0123 (7) | 0.0124 (8) | −0.0001 (6) | 0.0038 (6) | 0.0005 (6) |
C2 | 0.0131 (9) | 0.0100 (8) | 0.0134 (9) | 0.0006 (7) | 0.0045 (8) | −0.0013 (7) |
N3 | 0.0130 (8) | 0.0134 (7) | 0.0121 (8) | 0.0014 (6) | 0.0046 (6) | 0.0005 (6) |
C4 | 0.0149 (9) | 0.0123 (8) | 0.0110 (9) | 0.0041 (7) | 0.0052 (8) | 0.0004 (6) |
C5 | 0.0132 (9) | 0.0131 (8) | 0.0112 (9) | 0.0018 (7) | 0.0034 (7) | −0.0007 (7) |
C6 | 0.0140 (9) | 0.0088 (7) | 0.0123 (9) | 0.0005 (7) | 0.0052 (7) | −0.0026 (6) |
N21 | 0.0124 (8) | 0.0175 (8) | 0.0126 (8) | −0.0027 (6) | 0.0043 (7) | 0.0023 (6) |
O41 | 0.0154 (7) | 0.0218 (7) | 0.0122 (7) | −0.0003 (5) | 0.0038 (6) | 0.0047 (5) |
C41 | 0.0174 (10) | 0.0288 (10) | 0.0163 (10) | 0.0004 (8) | 0.0063 (8) | 0.0088 (8) |
N51 | 0.0145 (8) | 0.0209 (8) | 0.0164 (9) | 0.0003 (6) | 0.0041 (7) | 0.0001 (6) |
O51 | 0.0117 (7) | 0.0268 (7) | 0.0205 (8) | −0.0032 (5) | 0.0026 (6) | 0.0020 (6) |
N61 | 0.0093 (7) | 0.0140 (7) | 0.0106 (8) | −0.0007 (6) | 0.0014 (6) | −0.0001 (6) |
C61 | 0.0122 (9) | 0.0103 (8) | 0.0126 (9) | 0.0027 (6) | 0.0053 (7) | −0.0002 (6) |
C62 | 0.0113 (9) | 0.0138 (8) | 0.0145 (10) | 0.0003 (7) | 0.0045 (8) | −0.0020 (7) |
C63 | 0.0143 (9) | 0.0154 (8) | 0.0211 (11) | −0.0015 (7) | 0.0075 (8) | 0.0016 (7) |
C64 | 0.0166 (10) | 0.0194 (9) | 0.0169 (10) | 0.0022 (8) | 0.0066 (8) | 0.0057 (7) |
C65 | 0.0139 (9) | 0.0192 (9) | 0.0121 (10) | 0.0024 (7) | 0.0020 (8) | 0.0000 (7) |
C66 | 0.0118 (9) | 0.0135 (8) | 0.0164 (10) | −0.0008 (7) | 0.0053 (8) | −0.0014 (7) |
N62 | 0.0111 (8) | 0.0152 (7) | 0.0159 (9) | −0.0031 (6) | 0.0025 (7) | −0.0007 (6) |
C77 | 0.0157 (9) | 0.0105 (8) | 0.0149 (10) | −0.0019 (7) | 0.0064 (8) | 0.0007 (7) |
C71 | 0.0113 (9) | 0.0088 (8) | 0.0160 (10) | −0.0015 (6) | 0.0028 (8) | 0.0013 (6) |
C72 | 0.0140 (9) | 0.0142 (8) | 0.0179 (10) | −0.0015 (7) | 0.0072 (8) | −0.0004 (7) |
C73 | 0.0213 (10) | 0.0158 (9) | 0.0134 (10) | −0.0024 (7) | 0.0066 (8) | −0.0016 (7) |
C74 | 0.0161 (10) | 0.0116 (8) | 0.0176 (10) | −0.0006 (7) | 0.0019 (8) | 0.0033 (7) |
C75 | 0.0111 (9) | 0.0118 (8) | 0.0221 (11) | 0.0009 (7) | 0.0048 (8) | 0.0017 (7) |
C76 | 0.0153 (9) | 0.0099 (8) | 0.0155 (10) | −0.0004 (7) | 0.0059 (8) | 0.0007 (7) |
C78 | 0.0203 (11) | 0.0265 (10) | 0.0194 (11) | −0.0011 (8) | −0.0002 (9) | 0.0049 (8) |
S21 | 0.0120 (2) | 0.0138 (2) | 0.0145 (2) | −0.00037 (17) | 0.00398 (18) | 0.00120 (17) |
O21 | 0.0175 (7) | 0.0238 (7) | 0.0143 (7) | −0.0023 (5) | 0.0039 (6) | 0.0032 (5) |
C21 | 0.0210 (11) | 0.0156 (9) | 0.0283 (12) | −0.0048 (8) | 0.0091 (9) | −0.0044 (8) |
C22 | 0.0184 (10) | 0.0154 (9) | 0.0259 (11) | −0.0016 (7) | 0.0111 (9) | 0.0022 (7) |
Geometric parameters (Å, º) top
N1—C6 | 1.328 (2) | C65—H65 | 0.9500 |
N1—C2 | 1.349 (2) | C66—H66 | 0.9500 |
C2—N21 | 1.323 (2) | N62—C77 | 1.279 (2) |
C2—N3 | 1.368 (2) | C77—C71 | 1.462 (3) |
N3—C4 | 1.309 (2) | C77—H77 | 0.9500 |
C4—O41 | 1.327 (2) | C71—C72 | 1.399 (3) |
C4—C5 | 1.439 (2) | C71—C76 | 1.401 (3) |
C5—N51 | 1.353 (2) | C72—C73 | 1.375 (3) |
C5—C6 | 1.445 (3) | C72—H72 | 0.9500 |
C6—N61 | 1.345 (2) | C73—C74 | 1.399 (3) |
N21—H21A | 0.87 (2) | C73—H73 | 0.9500 |
N21—H21B | 0.88 (2) | C74—C75 | 1.393 (3) |
O41—C41 | 1.451 (2) | C74—C78 | 1.503 (3) |
C41—H41C | 0.9800 | C75—C76 | 1.384 (3) |
C41—H41A | 0.9800 | C75—H75 | 0.9500 |
C41—H41B | 0.9800 | C76—H76 | 0.9500 |
N51—O51 | 1.286 (2) | C78—H78A | 0.9800 |
N61—C61 | 1.406 (2) | C78—H78C | 0.9800 |
N61—H61 | 0.85 (2) | C78—H78B | 0.9800 |
C61—C66 | 1.389 (3) | S21—O21 | 1.5100 (16) |
C61—C62 | 1.414 (2) | S21—C21 | 1.7865 (19) |
C62—C63 | 1.392 (3) | S21—C22 | 1.787 (2) |
C62—N62 | 1.407 (2) | C21—H21C | 0.9800 |
C63—C64 | 1.385 (3) | C21—H21D | 0.9800 |
C63—H63 | 0.9500 | C21—H21E | 0.9800 |
C64—C65 | 1.386 (3) | C22—H22C | 0.9800 |
C64—H64 | 0.9500 | C22—H22D | 0.9800 |
C65—C66 | 1.391 (3) | C22—H22E | 0.9800 |
| | | |
C6—N1—C2 | 116.64 (15) | C65—C66—H66 | 120.2 |
N21—C2—N1 | 117.28 (17) | C77—N62—C62 | 118.41 (16) |
N21—C2—N3 | 115.21 (16) | N62—C77—C71 | 121.26 (17) |
N1—C2—N3 | 127.51 (17) | N62—C77—H77 | 119.4 |
C4—N3—C2 | 115.41 (15) | C71—C77—H77 | 119.4 |
N3—C4—O41 | 119.74 (16) | C72—C71—C76 | 118.75 (17) |
N3—C4—C5 | 123.76 (16) | C72—C71—C77 | 121.00 (17) |
O41—C4—C5 | 116.49 (16) | C76—C71—C77 | 120.25 (17) |
N51—C5—C4 | 116.80 (16) | C73—C72—C71 | 120.48 (17) |
N51—C5—C6 | 128.44 (16) | C73—C72—H72 | 119.8 |
C4—C5—C6 | 114.71 (16) | C71—C72—H72 | 119.8 |
N1—C6—N61 | 120.67 (16) | C72—C73—C74 | 121.16 (18) |
N1—C6—C5 | 121.86 (16) | C72—C73—H73 | 119.4 |
N61—C6—C5 | 117.47 (16) | C74—C73—H73 | 119.4 |
C2—N21—H21A | 119.9 (14) | C75—C74—C73 | 118.34 (17) |
C2—N21—H21B | 120.4 (13) | C75—C74—C78 | 121.12 (17) |
H21A—N21—H21B | 119.0 (19) | C73—C74—C78 | 120.52 (18) |
C4—O41—C41 | 116.68 (14) | C76—C75—C74 | 121.00 (17) |
O41—C41—H41C | 109.5 | C76—C75—H75 | 119.5 |
O41—C41—H41A | 109.5 | C74—C75—H75 | 119.5 |
H41C—C41—H41A | 109.5 | C75—C76—C71 | 120.25 (17) |
O41—C41—H41B | 109.5 | C75—C76—H76 | 119.9 |
H41C—C41—H41B | 109.5 | C71—C76—H76 | 119.9 |
H41A—C41—H41B | 109.5 | C74—C78—H78A | 109.5 |
O51—N51—C5 | 117.41 (15) | C74—C78—H78C | 109.5 |
C6—N61—C61 | 130.83 (16) | H78A—C78—H78C | 109.5 |
C6—N61—H61 | 111.9 (13) | C74—C78—H78B | 109.5 |
C61—N61—H61 | 117.2 (13) | H78A—C78—H78B | 109.5 |
C66—C61—N61 | 125.34 (16) | H78C—C78—H78B | 109.5 |
C66—C61—C62 | 119.58 (16) | O21—S21—C21 | 105.95 (9) |
N61—C61—C62 | 115.04 (16) | O21—S21—C22 | 105.72 (9) |
C63—C62—N62 | 123.24 (16) | C21—S21—C22 | 97.42 (9) |
C63—C62—C61 | 119.68 (17) | S21—C21—H21C | 109.5 |
N62—C62—C61 | 117.04 (16) | S21—C21—H21D | 109.5 |
C64—C63—C62 | 120.38 (17) | H21C—C21—H21D | 109.5 |
C64—C63—H63 | 119.8 | S21—C21—H21E | 109.5 |
C62—C63—H63 | 119.8 | H21C—C21—H21E | 109.5 |
C63—C64—C65 | 119.57 (17) | H21D—C21—H21E | 109.5 |
C63—C64—H64 | 120.2 | S21—C22—H22C | 109.5 |
C65—C64—H64 | 120.2 | S21—C22—H22D | 109.5 |
C64—C65—C66 | 121.17 (18) | H22C—C22—H22D | 109.5 |
C64—C65—H65 | 119.4 | S21—C22—H22E | 109.5 |
C66—C65—H65 | 119.4 | H22C—C22—H22E | 109.5 |
C61—C66—C65 | 119.54 (17) | H22D—C22—H22E | 109.5 |
C61—C66—H66 | 120.2 | | |
| | | |
C6—N1—C2—N21 | 178.19 (15) | N61—C61—C62—C63 | 179.51 (16) |
C6—N1—C2—N3 | −2.7 (2) | C66—C61—C62—N62 | 179.76 (15) |
N21—C2—N3—C4 | −176.88 (15) | N61—C61—C62—N62 | 1.8 (2) |
N1—C2—N3—C4 | 4.0 (2) | N62—C62—C63—C64 | −179.81 (16) |
C2—N3—C4—O41 | 178.97 (14) | C61—C62—C63—C64 | 2.6 (3) |
C2—N3—C4—C5 | −2.1 (2) | C62—C63—C64—C65 | −0.6 (3) |
N3—C4—C5—N51 | 177.09 (16) | C63—C64—C65—C66 | −1.5 (3) |
O41—C4—C5—N51 | −3.9 (2) | N61—C61—C66—C65 | 178.21 (16) |
N3—C4—C5—C6 | −0.6 (2) | C62—C61—C66—C65 | 0.4 (3) |
O41—C4—C5—C6 | 178.40 (14) | C64—C65—C66—C61 | 1.6 (3) |
C2—N1—C6—N61 | 179.07 (15) | C63—C62—N62—C77 | 50.9 (2) |
C2—N1—C6—C5 | −0.5 (2) | C61—C62—N62—C77 | −131.48 (17) |
N51—C5—C6—N1 | −175.36 (16) | C62—N62—C77—C71 | 178.98 (14) |
C4—C5—C6—N1 | 2.0 (2) | N62—C77—C71—C72 | 6.9 (2) |
N51—C5—C6—N61 | 5.0 (3) | N62—C77—C71—C76 | −172.06 (16) |
C4—C5—C6—N61 | −177.63 (14) | C76—C71—C72—C73 | 1.0 (2) |
N3—C4—O41—C41 | 0.8 (2) | C77—C71—C72—C73 | −177.95 (15) |
C5—C4—O41—C41 | −178.20 (15) | C71—C72—C73—C74 | 0.0 (3) |
C4—C5—N51—O51 | 178.94 (15) | C72—C73—C74—C75 | −1.2 (3) |
C6—C5—N51—O51 | −3.8 (3) | C72—C73—C74—C78 | 177.29 (16) |
N1—C6—N61—C61 | 0.5 (3) | C73—C74—C75—C76 | 1.4 (2) |
C5—C6—N61—C61 | −179.90 (16) | C78—C74—C75—C76 | −177.11 (16) |
C6—N61—C61—C66 | 7.8 (3) | C74—C75—C76—C71 | −0.4 (2) |
C6—N61—C61—C62 | −174.29 (16) | C72—C71—C76—C75 | −0.8 (2) |
C66—C61—C62—C63 | −2.5 (2) | C77—C71—C76—C75 | 178.13 (15) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21A···O21 | 0.87 (2) | 2.05 (2) | 2.922 (3) | 173.7 (19) |
N21—H21B···O21i | 0.88 (2) | 2.08 (2) | 2.885 (3) | 152.1 (19) |
N61—H61···O51 | 0.85 (2) | 1.88 (2) | 2.601 (3) | 142.4 (19) |
Symmetry code: (i) −x+2, −y+1, −z+1. |
N4-{2-[(Ethoxymethylidene)amino]phenyl}-6-methoxy-5-nitrosopyrimidine-2,4-diamine dimethyl sulfoxide monosolvate (III)
top
Crystal data top
C14H16N6O3·C2H6OS | F(000) = 832 |
Mr = 394.46 | Dx = 1.363 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 10.8498 (11) Å | Cell parameters from 4608 reflections |
b = 17.2238 (15) Å | θ = 2.3–27.9° |
c = 11.3806 (11) Å | µ = 0.20 mm−1 |
β = 115.351 (3)° | T = 100 K |
V = 1921.9 (3) Å3 | Block, brown |
Z = 4 | 0.20 × 0.17 × 0.13 mm |
Data collection top
Bruker D8 Venture diffractometer | 4606 independent reflections |
Radiation source: INCOATEC high brilliance microfocus sealed tube | 3808 reflections with I > 2σ(I) |
Multilayer mirror monochromator | Rint = 0.066 |
φ and ω scans | θmax = 27.9°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | h = −14→14 |
Tmin = 0.935, Tmax = 0.974 | k = −22→22 |
51879 measured reflections | l = −14→14 |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.088 | w = 1/[σ2(Fo2) + (0.0343P)2 + 1.3229P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
4606 reflections | Δρmax = 0.35 e Å−3 |
257 parameters | Δρmin = −0.38 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.62364 (12) | 0.45133 (7) | 0.43599 (11) | 0.0132 (2) | |
C2 | 0.68864 (15) | 0.49854 (8) | 0.38650 (13) | 0.0134 (3) | |
N3 | 0.63374 (12) | 0.53671 (7) | 0.26896 (12) | 0.0134 (2) | |
C4 | 0.50414 (15) | 0.52505 (8) | 0.19766 (13) | 0.0124 (3) | |
C5 | 0.42094 (14) | 0.47440 (8) | 0.23492 (14) | 0.0124 (3) | |
C6 | 0.49167 (14) | 0.43866 (8) | 0.36181 (13) | 0.0116 (3) | |
N21 | 0.82050 (13) | 0.51041 (8) | 0.45783 (13) | 0.0181 (3) | |
H21A | 0.8645 (19) | 0.5371 (11) | 0.4248 (18) | 0.022* | |
H21B | 0.8638 (19) | 0.4833 (11) | 0.5284 (19) | 0.022* | |
O41 | 0.44084 (10) | 0.56004 (6) | 0.08289 (10) | 0.0156 (2) | |
C41 | 0.52208 (16) | 0.61220 (9) | 0.04430 (15) | 0.0181 (3) | |
H41A | 0.5663 | 0.6508 | 0.1128 | 0.027* | |
H41B | 0.4630 | 0.6386 | −0.0366 | 0.027* | |
H41C | 0.5918 | 0.5824 | 0.0307 | 0.027* | |
N51 | 0.29003 (13) | 0.46569 (7) | 0.14913 (12) | 0.0163 (3) | |
O51 | 0.21437 (11) | 0.42050 (6) | 0.18101 (11) | 0.0194 (2) | |
N61 | 0.41891 (13) | 0.39107 (7) | 0.40144 (12) | 0.0124 (2) | |
H61 | 0.3344 (19) | 0.3865 (10) | 0.3433 (17) | 0.015* | |
C61 | 0.45849 (15) | 0.34729 (8) | 0.51643 (13) | 0.0124 (3) | |
C62 | 0.35674 (15) | 0.29664 (8) | 0.51885 (14) | 0.0146 (3) | |
C63 | 0.38502 (17) | 0.25081 (9) | 0.62812 (15) | 0.0189 (3) | |
H63 | 0.3172 | 0.2166 | 0.6302 | 0.023* | |
C64 | 0.51191 (17) | 0.25470 (9) | 0.73433 (15) | 0.0204 (3) | |
H64 | 0.5308 | 0.2231 | 0.8085 | 0.024* | |
C65 | 0.61052 (17) | 0.30466 (9) | 0.73158 (15) | 0.0198 (3) | |
H65 | 0.6969 | 0.3072 | 0.8044 | 0.024* | |
C66 | 0.58482 (15) | 0.35135 (8) | 0.62337 (14) | 0.0154 (3) | |
H66 | 0.6531 | 0.3857 | 0.6227 | 0.018* | |
N62 | 0.23363 (13) | 0.29167 (7) | 0.40440 (12) | 0.0164 (3) | |
C67 | 0.12132 (17) | 0.29543 (9) | 0.41230 (16) | 0.0206 (3) | |
H67 | 0.1223 | 0.3044 | 0.4951 | 0.025* | |
O67 | 0.00062 (11) | 0.28728 (7) | 0.30906 (11) | 0.0233 (3) | |
C68 | 0.00766 (16) | 0.27278 (9) | 0.18557 (15) | 0.0195 (3) | |
H68A | 0.0664 | 0.2272 | 0.1935 | 0.023* | |
H68B | 0.0468 | 0.3184 | 0.1607 | 0.023* | |
C69 | −0.13509 (17) | 0.25776 (10) | 0.08446 (17) | 0.0275 (4) | |
H69A | −0.1728 | 0.2126 | 0.1101 | 0.041* | |
H69B | −0.1334 | 0.2476 | 0.0005 | 0.041* | |
H69C | −0.1921 | 0.3033 | 0.0770 | 0.041* | |
S21 | 0.89988 (4) | 0.57171 (2) | 0.18998 (3) | 0.01387 (9) | |
O21 | 0.97955 (11) | 0.57988 (6) | 0.33640 (10) | 0.0180 (2) | |
C21 | 0.88050 (17) | 0.46953 (9) | 0.15983 (15) | 0.0195 (3) | |
H21C | 0.9705 | 0.4448 | 0.1956 | 0.029* | |
H21D | 0.8345 | 0.4602 | 0.0659 | 0.029* | |
H21E | 0.8258 | 0.4475 | 0.2015 | 0.029* | |
C22 | 1.01965 (16) | 0.59012 (9) | 0.12422 (15) | 0.0192 (3) | |
H22A | 1.0980 | 0.5553 | 0.1650 | 0.029* | |
H22B | 1.0505 | 0.6441 | 0.1414 | 0.029* | |
H22C | 0.9762 | 0.5810 | 0.0302 | 0.029* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0145 (6) | 0.0141 (6) | 0.0125 (6) | −0.0005 (5) | 0.0071 (5) | 0.0011 (5) |
C2 | 0.0148 (7) | 0.0140 (6) | 0.0127 (7) | −0.0001 (5) | 0.0072 (6) | −0.0008 (5) |
N3 | 0.0141 (6) | 0.0145 (6) | 0.0134 (6) | −0.0002 (5) | 0.0076 (5) | 0.0016 (5) |
C4 | 0.0158 (7) | 0.0107 (6) | 0.0129 (6) | 0.0025 (5) | 0.0084 (6) | 0.0010 (5) |
C5 | 0.0133 (7) | 0.0116 (6) | 0.0135 (7) | 0.0020 (5) | 0.0068 (6) | −0.0002 (5) |
C6 | 0.0142 (7) | 0.0091 (6) | 0.0135 (6) | 0.0017 (5) | 0.0079 (5) | −0.0012 (5) |
N21 | 0.0135 (6) | 0.0261 (7) | 0.0137 (6) | −0.0038 (5) | 0.0049 (5) | 0.0056 (5) |
O41 | 0.0151 (5) | 0.0167 (5) | 0.0152 (5) | −0.0004 (4) | 0.0068 (4) | 0.0065 (4) |
C41 | 0.0191 (8) | 0.0197 (7) | 0.0177 (7) | −0.0007 (6) | 0.0099 (6) | 0.0073 (6) |
N51 | 0.0147 (6) | 0.0161 (6) | 0.0189 (6) | 0.0003 (5) | 0.0079 (5) | 0.0034 (5) |
O51 | 0.0137 (5) | 0.0217 (6) | 0.0229 (6) | −0.0020 (4) | 0.0078 (4) | 0.0066 (4) |
N61 | 0.0125 (6) | 0.0128 (6) | 0.0132 (6) | 0.0008 (5) | 0.0066 (5) | 0.0016 (5) |
C61 | 0.0180 (7) | 0.0103 (6) | 0.0123 (7) | 0.0021 (5) | 0.0098 (6) | 0.0003 (5) |
C62 | 0.0196 (7) | 0.0113 (6) | 0.0159 (7) | −0.0004 (5) | 0.0107 (6) | −0.0018 (5) |
C63 | 0.0275 (8) | 0.0136 (7) | 0.0205 (8) | −0.0033 (6) | 0.0151 (7) | 0.0003 (6) |
C64 | 0.0307 (9) | 0.0168 (7) | 0.0164 (7) | 0.0017 (6) | 0.0128 (7) | 0.0044 (6) |
C65 | 0.0218 (8) | 0.0228 (8) | 0.0148 (7) | 0.0030 (6) | 0.0079 (6) | 0.0036 (6) |
C66 | 0.0179 (7) | 0.0155 (7) | 0.0157 (7) | 0.0012 (5) | 0.0100 (6) | 0.0019 (5) |
N62 | 0.0201 (7) | 0.0123 (6) | 0.0180 (6) | −0.0040 (5) | 0.0094 (5) | −0.0001 (5) |
C67 | 0.0234 (8) | 0.0205 (8) | 0.0209 (8) | −0.0058 (6) | 0.0124 (7) | −0.0011 (6) |
O67 | 0.0189 (6) | 0.0295 (6) | 0.0234 (6) | −0.0061 (5) | 0.0110 (5) | −0.0007 (5) |
C68 | 0.0214 (8) | 0.0174 (7) | 0.0198 (8) | −0.0038 (6) | 0.0091 (6) | 0.0015 (6) |
C69 | 0.0233 (9) | 0.0284 (9) | 0.0258 (9) | −0.0049 (7) | 0.0057 (7) | 0.0030 (7) |
S21 | 0.01340 (17) | 0.01437 (17) | 0.01379 (17) | 0.00099 (13) | 0.00578 (14) | 0.00251 (13) |
O21 | 0.0193 (5) | 0.0197 (5) | 0.0136 (5) | −0.0035 (4) | 0.0058 (4) | 0.0016 (4) |
C21 | 0.0228 (8) | 0.0141 (7) | 0.0204 (8) | −0.0020 (6) | 0.0081 (7) | −0.0003 (6) |
C22 | 0.0196 (8) | 0.0210 (7) | 0.0208 (8) | −0.0004 (6) | 0.0122 (6) | 0.0022 (6) |
Geometric parameters (Å, º) top
N1—C6 | 1.3324 (18) | C64—C65 | 1.384 (2) |
N1—C2 | 1.3476 (18) | C64—H64 | 0.9500 |
C2—N21 | 1.3240 (19) | C65—C66 | 1.395 (2) |
C2—N3 | 1.3762 (18) | C65—H65 | 0.9500 |
N3—C4 | 1.3034 (19) | C66—H66 | 0.9500 |
C4—O41 | 1.3315 (17) | N62—C67 | 1.261 (2) |
C4—C5 | 1.4434 (19) | C67—O67 | 1.341 (2) |
C5—N51 | 1.3437 (19) | C67—H67 | 0.9500 |
C5—C6 | 1.4506 (19) | O67—C68 | 1.4613 (19) |
C6—N61 | 1.3429 (18) | C68—C69 | 1.505 (2) |
N21—H21A | 0.86 (2) | C68—H68A | 0.9900 |
N21—H21B | 0.87 (2) | C68—H68B | 0.9900 |
O41—C41 | 1.4520 (17) | C69—H69A | 0.9800 |
C41—H41A | 0.9800 | C69—H69B | 0.9800 |
C41—H41B | 0.9800 | C69—H69C | 0.9800 |
C41—H41C | 0.9800 | S21—O21 | 1.5200 (11) |
N51—O51 | 1.2909 (16) | S21—C22 | 1.7839 (15) |
N61—C61 | 1.4087 (18) | S21—C21 | 1.7883 (15) |
N61—H61 | 0.874 (18) | C21—H21C | 0.9800 |
C61—C66 | 1.392 (2) | C21—H21D | 0.9800 |
C61—C62 | 1.417 (2) | C21—H21E | 0.9800 |
C62—C63 | 1.392 (2) | C22—H22A | 0.9800 |
C62—N62 | 1.414 (2) | C22—H22B | 0.9800 |
C63—C64 | 1.391 (2) | C22—H22C | 0.9800 |
C63—H63 | 0.9500 | | |
| | | |
C6—N1—C2 | 116.53 (12) | C63—C64—H64 | 120.1 |
N21—C2—N1 | 117.28 (13) | C64—C65—C66 | 120.94 (15) |
N21—C2—N3 | 115.25 (13) | C64—C65—H65 | 119.5 |
N1—C2—N3 | 127.47 (13) | C66—C65—H65 | 119.5 |
C4—N3—C2 | 115.73 (12) | C61—C66—C65 | 119.52 (14) |
N3—C4—O41 | 120.45 (13) | C61—C66—H66 | 120.2 |
N3—C4—C5 | 123.64 (13) | C65—C66—H66 | 120.2 |
O41—C4—C5 | 115.91 (13) | C67—N62—C62 | 119.46 (13) |
N51—C5—C4 | 116.96 (13) | N62—C67—O67 | 122.90 (14) |
N51—C5—C6 | 128.32 (13) | N62—C67—H67 | 118.6 |
C4—C5—C6 | 114.71 (12) | O67—C67—H67 | 118.6 |
N1—C6—N61 | 120.93 (13) | C67—O67—C68 | 115.28 (12) |
N1—C6—C5 | 121.89 (12) | O67—C68—C69 | 107.72 (13) |
N61—C6—C5 | 117.18 (13) | O67—C68—H68A | 110.2 |
C2—N21—H21A | 118.2 (13) | C69—C68—H68A | 110.2 |
C2—N21—H21B | 119.8 (12) | O67—C68—H68B | 110.2 |
H21A—N21—H21B | 120.6 (18) | C69—C68—H68B | 110.2 |
C4—O41—C41 | 116.86 (11) | H68A—C68—H68B | 108.5 |
O41—C41—H41A | 109.5 | C68—C69—H69A | 109.5 |
O41—C41—H41B | 109.5 | C68—C69—H69B | 109.5 |
H41A—C41—H41B | 109.5 | H69A—C69—H69B | 109.5 |
O41—C41—H41C | 109.5 | C68—C69—H69C | 109.5 |
H41A—C41—H41C | 109.5 | H69A—C69—H69C | 109.5 |
H41B—C41—H41C | 109.5 | H69B—C69—H69C | 109.5 |
O51—N51—C5 | 117.68 (12) | O21—S21—C22 | 105.61 (7) |
C6—N61—C61 | 130.50 (13) | O21—S21—C21 | 105.44 (7) |
C6—N61—H61 | 112.2 (11) | C22—S21—C21 | 98.13 (7) |
C61—N61—H61 | 117.3 (11) | S21—C21—H21C | 109.5 |
C66—C61—N61 | 125.45 (13) | S21—C21—H21D | 109.5 |
C66—C61—C62 | 119.86 (13) | H21C—C21—H21D | 109.5 |
N61—C61—C62 | 114.68 (13) | S21—C21—H21E | 109.5 |
C63—C62—N62 | 123.29 (13) | H21C—C21—H21E | 109.5 |
C63—C62—C61 | 119.42 (14) | H21D—C21—H21E | 109.5 |
N62—C62—C61 | 117.14 (13) | S21—C22—H22A | 109.5 |
C64—C63—C62 | 120.43 (14) | S21—C22—H22B | 109.5 |
C64—C63—H63 | 119.8 | H22A—C22—H22B | 109.5 |
C62—C63—H63 | 119.8 | S21—C22—H22C | 109.5 |
C65—C64—C63 | 119.82 (14) | H22A—C22—H22C | 109.5 |
C65—C64—H64 | 120.1 | H22B—C22—H22C | 109.5 |
| | | |
C6—N1—C2—N21 | −178.60 (13) | N1—C6—N61—C61 | −0.6 (2) |
C6—N1—C2—N3 | 1.5 (2) | C5—C6—N61—C61 | 178.58 (13) |
N21—C2—N3—C4 | 179.62 (13) | C6—N61—C61—C66 | 7.5 (2) |
N1—C2—N3—C4 | −0.5 (2) | C6—N61—C61—C62 | −173.40 (13) |
C2—N3—C4—O41 | 179.17 (12) | C66—C61—C62—C63 | −0.7 (2) |
C2—N3—C4—C5 | −1.4 (2) | N61—C61—C62—C63 | −179.83 (13) |
N3—C4—C5—N51 | −177.41 (13) | C66—C61—C62—N62 | −176.28 (12) |
O41—C4—C5—N51 | 2.03 (19) | N61—C61—C62—N62 | 4.55 (18) |
N3—C4—C5—C6 | 2.1 (2) | N62—C62—C63—C64 | 175.50 (14) |
O41—C4—C5—C6 | −178.47 (12) | C61—C62—C63—C64 | 0.2 (2) |
C2—N1—C6—N61 | 178.48 (12) | C62—C63—C64—C65 | 0.2 (2) |
C2—N1—C6—C5 | −0.65 (19) | C63—C64—C65—C66 | −0.1 (2) |
N51—C5—C6—N1 | 178.46 (14) | N61—C61—C66—C65 | 179.82 (13) |
C4—C5—C6—N1 | −0.97 (19) | C62—C61—C66—C65 | 0.8 (2) |
N51—C5—C6—N61 | −0.7 (2) | C64—C65—C66—C61 | −0.4 (2) |
C4—C5—C6—N61 | 179.87 (12) | C63—C62—N62—C67 | 51.4 (2) |
N3—C4—O41—C41 | −1.46 (19) | C61—C62—N62—C67 | −133.18 (15) |
C5—C4—O41—C41 | 179.08 (12) | C62—N62—C67—O67 | −176.57 (13) |
C4—C5—N51—O51 | 179.92 (12) | N62—C67—O67—C68 | 0.6 (2) |
C6—C5—N51—O51 | 0.5 (2) | C67—O67—C68—C69 | 174.70 (13) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21A···O21 | 0.86 (2) | 2.05 (2) | 2.8916 (19) | 168.7 (18) |
N21—H21B···O21i | 0.87 (2) | 2.05 (2) | 2.8737 (18) | 157 (2) |
N61—H61···O51 | 0.88 (2) | 1.841 (18) | 2.5899 (18) | 142.4 (18) |
Symmetry code: (i) −x+2, −y+1, −z+1. |
Selected geometric parameters (Å, °) for compounds (I)–(III) topParameter | | (I) | (II) | (III) |
N1—C2 | | 1.349 (2) | 1.372 (3) | 1.3476 (18) |
C2—N3 | | 1.368 (2) | 1.353 (3) | 1.3762 (18) |
N3—C4 | | 1.309 (2) | 1.310 (3) | 1.3034 (19) |
C4—C5 | | 1.439 (2) | 1.436 (3) | 1.4434 (19) |
C5—C6 | | 1.445 (2) | 1.404 (3) | 1.4506 (19) |
C6—N1 | | 1.328 (2) | 1.322 (3) | 1.3324 (18) |
C2—N21 | | 1.323 (2) | 1.320 (3) | 1.3240 (19) |
C5—N51 | | 1.353 (2) | 1.401 (3) | 1.3437 (19) |
N51—O51 | | 1.286 (2) | 1.215 (3) | 1.2909 (16) |
C6—N61 | | 1.345 (2) | 1.417 (3) | 1.3429 (18) |
N61—C61 | | 1.406 (2) | | 1.4087 (18) |
C62—N62 | | 1.407 (2) | | 1.414 (2) |
N62—C67 | | | | 1.261 (2) |
N62—C77 | | 1.279 (2) | | |
Δ | | 0.067 | 0.186 | 0.0528 |
| | | | |
C4—C5—N51—O51 | | 178.94 (15) | 0.1 (3) | 178.58 (13) |
C6—N61—C61—C62 | | -174.29 (16) | | -173.40 (13) |
C61—C62—N62—C67 | | | | -133.18 (15) |
C62—N62—C67—O67 | | | | -176.57 (13) |
N62—C67—O67—C68 | | | | 0.6 (2) |
C67—O67—C68—C69 | | | | 174.70 (13) |
C61—C62—N62—C77 | | -131.38 (17) | | |
C62—N62—C77—C71 | | 178.98 (14) | | |
N62—C77—C71—C72 | | 6.9 (2) | | |
C77—C71—C72—C73 | | -177.96 (15) | | |
Note: Δ = [d(C5—N51) – d(N51—O51)]. |
Hydrogen-bond parameters (Å, °) for compounds (I)–(III) topCompound | D—H···A | | D—H | H···A | D···A | D—H···A |
(I) | N21—H21A···O21 | | 0.87 (2) | 2.05 (2) | 2.922 (3) | 173.7 (19) |
| N21—H21B···O21i | | 0.88 (2) | 2.08 (2) | 2.885 (3) | 152.1 (19) |
| N61—H61···O51 | | 0.85 (2) | 1.88 (2) | 2.601 (3) | 142.4 (19) |
(II) | N21—H21A···N1ii | | 0.91 (3) | 2.24 (2) | 3.145 (4) | 176 (2) |
| N21—H21B···N63iii | | 0.88 (3) | 2.08 (3) | 2.936 (4) | 166 (2) |
| C625—H625···O51iv | | 0.95 | 2.59 | 3.485 (5) | 157 |
(III) | N21—H21A···O21 | | 0.86 (2) | 2.05 (2) | 2.8916 (19) | 168.7 (18) |
| N21—H21B···O21i | | 0.86 (2) | 2.05 (2) | 2.8737 (18) | 157 (2) |
| N61—H61···O51 | | 0.88 (2) | 1.841 (18) | 2.5899 (18) | 142.4 (18) |
Symmetry codes:
(i) -x+2, -y+1, -z+1;
(ii) -x+1, -y+1, -z+1;
(iii) x, y+1, z;
(iv) -x+1, -y, -z+2. |