The cyclohexane ring in the title compound, C
21H
24N
8, adopts a chair conformation and the five-membered heterocyclic ring to which it is fused adopts a twist conformation on their common C-C bond. The substituents on the N atoms of the central five-membered heterocycle are arranged
trans with respect to the central ring. The terminal benzotriazole rings are oriented at angles of 74.66 (8) and 84.18 (8)° with respect to the mean plane of the central heterocycle. The angle between the two benzotriazole rings is 30.80 (9)°. The bond lengths and angles are within normal ranges; the largest deviation from expectation is for a long N-CH
2 bond length [1.476 (2) Å] as a consequence of an anomeric effect. In the crystal, molecules are connected by C-H

N hydrogen bonds.
Supporting information
CCDC reference: 852288
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean
(C-C) = 0.002 Å
- R factor = 0.052
- wR factor = 0.137
- Data-to-parameter ratio = 13.2
checkCIF/PLATON results
No syntax errors found
Alert level C
RINTA01_ALERT_3_C The value of Rint is greater than 0.12
Rint given 0.172
PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.598 12
Alert level G
PLAT005_ALERT_5_G No _iucr_refine_instructions_details in CIF .... ?
PLAT195_ALERT_1_G Missing _cell_measurement_theta_max datum .... ?
PLAT793_ALERT_4_G The Model has Chirality at C9 (Verify) .... R
PLAT793_ALERT_4_G The Model has Chirality at C14 (Verify) .... R
PLAT909_ALERT_3_G Percentage of Observed Data at Theta(Max) still 75 Perc.
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
2 ALERT level C = Check. Ensure it is not caused by an omission or oversight
5 ALERT level G = General information/check it is not something unexpected
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
3 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
1 ALERT type 5 Informative message, check
A solution of
(2R,7R,11S,16S)-1,8,10,17-tetraazapentacyclo-[8.8.1.18,17.02,7.011,16]icosane (276 mg, 1.00 mmol) in dioxane (3 ml)
and water (4 ml), previously prepared following described procedures, was
added dropwise in a dioxane solution (3 ml) containing two equivalents of
benzotriazole (238 mg, 2.00 mmol) in a two-necked round-bottomed flask. The
mixture was stirred for about 6 h. and then the solvent was evaporated under
reduced pressure until a sticky residue appeared. The product was purified by
chromatography on a silica column, and subjected to gradient elution with
benzene:ethyl acetate (yield 75%, m.p. = 424–425 K). Single crystals of the
racemic title compound were grown from a chloroform solution by slow
evaporation of the solvent at room temperature over a period of about 2 weeks.
The quality of the crystals was very low. The selected crystal for measurement
was the best one from several attempts. All H atoms were added in calculated
positions and refined as riding with C–H distances of 0.93 or 0.97 Å. The
isotropic atomic displacement parameters of H atoms were fixed to
1.2×Ueq of the parent atom.
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: publCIF (Westrip, 2010).
1,1'-[(2,3,3a,4,5,6,7,7a-Octahydro-1
H-1,3-benzimidazole-1,3-
diyl)bis(methylene)]bis(1
H-benzotriazole)
top
Crystal data top
| C21H24N8 | F(000) = 824 |
| Mr = 388.48 | Dx = 1.328 Mg m−3 |
| Monoclinic, P21/c | Melting point: 424 K |
| Hall symbol: -P 2ybc | Cu Kα radiation, λ = 1.5418 Å |
| a = 11.9474 (2) Å | Cell parameters from 13493 reflections |
| b = 5.9406 (1) Å | θ = 3.2° |
| c = 27.3861 (4) Å | µ = 0.68 mm−1 |
| β = 90.861 (1)° | T = 120 K |
| V = 1943.50 (5) Å3 | Plate, colourless |
| Z = 4 | 0.31 × 0.18 × 0.11 mm |
Data collection top
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer | 2990 reflections with I > 2σ(I) |
| Radiation source: Enhance Ultra (Cu) X-ray Source | Rint = 0.172 |
| Mirror monochromator | θmax = 67.1°, θmin = 3.2° |
| Detector resolution: 10.3784 pixels mm-1 | h = −14→14 |
| Rotation method data acquisition using ω scans | k = −7→7 |
| 37999 measured reflections | l = −32→32 |
| 3461 independent reflections | |
Refinement top
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.137 | H-atom parameters constrained |
| S = 1.06 | w = 1/[σ2(Fo2) + (0.0756P)2 + 0.4705P] where P = (Fo2 + 2Fc2)/3 |
| 3461 reflections | (Δ/σ)max < 0.001 |
| 262 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| 0 constraints | |
Crystal data top
| C21H24N8 | V = 1943.50 (5) Å3 |
| Mr = 388.48 | Z = 4 |
| Monoclinic, P21/c | Cu Kα radiation |
| a = 11.9474 (2) Å | µ = 0.68 mm−1 |
| b = 5.9406 (1) Å | T = 120 K |
| c = 27.3861 (4) Å | 0.31 × 0.18 × 0.11 mm |
| β = 90.861 (1)° | |
Data collection top
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer | 2990 reflections with I > 2σ(I) |
| 37999 measured reflections | Rint = 0.172 |
| 3461 independent reflections | |
Refinement top
| R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
| wR(F2) = 0.137 | H-atom parameters constrained |
| S = 1.06 | Δρmax = 0.23 e Å−3 |
| 3461 reflections | Δρmin = −0.31 e Å−3 |
| 262 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | |
| N1 | 0.06576 (12) | 1.3038 (2) | 0.03014 (5) | 0.0301 (4) | |
| N2 | 0.06561 (12) | 1.1599 (2) | 0.06570 (5) | 0.0298 (3) | |
| N3 | 0.12624 (11) | 0.9755 (2) | 0.05292 (5) | 0.0256 (3) | |
| N4 | 0.21777 (12) | 0.7711 (2) | 0.12114 (5) | 0.0277 (3) | |
| N5 | 0.34776 (11) | 0.9703 (2) | 0.16832 (5) | 0.0250 (3) | |
| N6 | 0.31150 (11) | 0.9133 (2) | 0.25550 (5) | 0.0240 (3) | |
| N7 | 0.34948 (11) | 0.7097 (3) | 0.27089 (5) | 0.0296 (4) | |
| N8 | 0.27753 (12) | 0.6222 (3) | 0.30094 (5) | 0.0302 (3) | |
| C1 | 0.12747 (13) | 1.2136 (3) | −0.00732 (6) | 0.0249 (4) | |
| C2 | 0.14940 (14) | 1.3000 (3) | −0.05407 (6) | 0.0293 (4) | |
| H2 | 0.1233 | 1.4406 | −0.0639 | 0.035* | |
| C3 | 0.21134 (15) | 1.1660 (3) | −0.08439 (7) | 0.0332 (4) | |
| H3 | 0.2266 | 1.2157 | −0.1158 | 0.040* | |
| C4 | 0.25227 (15) | 0.9548 (3) | −0.06892 (7) | 0.0334 (4) | |
| H4 | 0.2949 | 0.8705 | −0.0904 | 0.040* | |
| C5 | 0.23166 (14) | 0.8690 (3) | −0.02351 (7) | 0.0299 (4) | |
| H5 | 0.2591 | 0.7296 | −0.0136 | 0.036* | |
| C6 | 0.16690 (13) | 1.0034 (3) | 0.00695 (6) | 0.0239 (4) | |
| C7 | 0.12758 (14) | 0.7809 (3) | 0.08616 (7) | 0.0288 (4) | |
| H7A | 0.0577 | 0.7797 | 0.1038 | 0.035* | |
| H7B | 0.1296 | 0.6450 | 0.0666 | 0.035* | |
| C8 | 0.22853 (13) | 0.9669 (3) | 0.15340 (6) | 0.0270 (4) | |
| H8A | 0.1810 | 0.9509 | 0.1816 | 0.032* | |
| H8B | 0.2083 | 1.1041 | 0.1362 | 0.032* | |
| C9 | 0.33087 (14) | 0.7201 (3) | 0.10497 (6) | 0.0265 (4) | |
| H9 | 0.3541 | 0.8339 | 0.0813 | 0.032* | |
| C10 | 0.35246 (16) | 0.4874 (3) | 0.08427 (7) | 0.0350 (4) | |
| H10A | 0.3126 | 0.4691 | 0.0534 | 0.042* | |
| H10B | 0.3265 | 0.3730 | 0.1067 | 0.042* | |
| C11 | 0.47850 (16) | 0.4632 (3) | 0.07680 (8) | 0.0391 (5) | |
| H11A | 0.5017 | 0.5670 | 0.0515 | 0.047* | |
| H11B | 0.4945 | 0.3117 | 0.0657 | 0.047* | |
| C12 | 0.54586 (16) | 0.5107 (3) | 0.12368 (8) | 0.0391 (5) | |
| H12A | 0.6251 | 0.5020 | 0.1167 | 0.047* | |
| H12B | 0.5292 | 0.3956 | 0.1476 | 0.047* | |
| C13 | 0.51985 (14) | 0.7429 (3) | 0.14530 (7) | 0.0338 (4) | |
| H13A | 0.5590 | 0.7621 | 0.1763 | 0.041* | |
| H13B | 0.5437 | 0.8607 | 0.1233 | 0.041* | |
| C14 | 0.39463 (14) | 0.7551 (3) | 0.15242 (6) | 0.0265 (4) | |
| H14 | 0.3728 | 0.6377 | 0.1755 | 0.032* | |
| C15 | 0.37030 (13) | 1.0415 (3) | 0.21750 (6) | 0.0270 (4) | |
| H15A | 0.3498 | 1.1989 | 0.2204 | 0.032* | |
| H15B | 0.4502 | 1.0302 | 0.2238 | 0.032* | |
| C16 | 0.21029 (13) | 0.9579 (3) | 0.27606 (6) | 0.0235 (4) | |
| C17 | 0.13513 (14) | 1.1384 (3) | 0.27189 (6) | 0.0284 (4) | |
| H17 | 0.1497 | 1.2636 | 0.2526 | 0.034* | |
| C18 | 0.03858 (15) | 1.1180 (3) | 0.29813 (7) | 0.0333 (4) | |
| H18 | −0.0144 | 1.2324 | 0.2960 | 0.040* | |
| C19 | 0.01666 (14) | 0.9313 (3) | 0.32806 (6) | 0.0313 (4) | |
| H19 | −0.0497 | 0.9267 | 0.3454 | 0.038* | |
| C20 | 0.09064 (14) | 0.7563 (3) | 0.33234 (6) | 0.0297 (4) | |
| H20 | 0.0762 | 0.6333 | 0.3523 | 0.036* | |
| C21 | 0.18967 (14) | 0.7708 (3) | 0.30514 (6) | 0.0255 (4) | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| N1 | 0.0331 (8) | 0.0264 (8) | 0.0309 (8) | 0.0061 (6) | −0.0009 (6) | −0.0036 (6) |
| N2 | 0.0288 (7) | 0.0288 (8) | 0.0320 (8) | 0.0062 (6) | 0.0007 (6) | −0.0046 (6) |
| N3 | 0.0240 (7) | 0.0252 (7) | 0.0275 (8) | 0.0008 (5) | 0.0001 (6) | −0.0031 (6) |
| N4 | 0.0231 (7) | 0.0284 (8) | 0.0316 (8) | −0.0020 (5) | −0.0018 (6) | 0.0023 (6) |
| N5 | 0.0199 (7) | 0.0294 (8) | 0.0258 (8) | −0.0033 (5) | 0.0033 (5) | 0.0013 (6) |
| N6 | 0.0203 (6) | 0.0282 (7) | 0.0233 (7) | −0.0007 (5) | 0.0004 (5) | 0.0026 (5) |
| N7 | 0.0238 (7) | 0.0329 (8) | 0.0320 (8) | 0.0046 (6) | 0.0004 (6) | 0.0050 (6) |
| N8 | 0.0263 (7) | 0.0314 (8) | 0.0329 (8) | 0.0032 (6) | 0.0028 (6) | 0.0057 (6) |
| C1 | 0.0228 (8) | 0.0221 (8) | 0.0298 (9) | −0.0012 (6) | −0.0019 (6) | −0.0047 (6) |
| C2 | 0.0281 (8) | 0.0257 (9) | 0.0338 (10) | −0.0039 (7) | −0.0051 (7) | 0.0021 (7) |
| C3 | 0.0281 (9) | 0.0409 (10) | 0.0308 (9) | −0.0068 (7) | 0.0025 (7) | 0.0020 (8) |
| C4 | 0.0283 (9) | 0.0375 (10) | 0.0345 (10) | 0.0027 (7) | 0.0063 (7) | −0.0074 (8) |
| C5 | 0.0267 (8) | 0.0271 (9) | 0.0361 (10) | 0.0033 (7) | 0.0018 (7) | −0.0047 (7) |
| C6 | 0.0204 (7) | 0.0258 (8) | 0.0255 (9) | −0.0025 (6) | −0.0025 (6) | −0.0034 (6) |
| C7 | 0.0256 (8) | 0.0261 (9) | 0.0345 (10) | −0.0034 (6) | −0.0024 (7) | 0.0021 (7) |
| C8 | 0.0218 (8) | 0.0345 (9) | 0.0247 (9) | −0.0010 (7) | 0.0016 (6) | 0.0004 (7) |
| C9 | 0.0249 (8) | 0.0247 (9) | 0.0299 (9) | −0.0019 (6) | 0.0020 (7) | 0.0035 (7) |
| C10 | 0.0373 (10) | 0.0263 (9) | 0.0412 (11) | 0.0003 (7) | −0.0049 (8) | −0.0014 (8) |
| C11 | 0.0403 (11) | 0.0298 (10) | 0.0473 (12) | 0.0066 (8) | 0.0055 (9) | −0.0036 (8) |
| C12 | 0.0282 (9) | 0.0362 (11) | 0.0530 (13) | 0.0040 (8) | 0.0008 (8) | 0.0004 (9) |
| C13 | 0.0230 (9) | 0.0353 (10) | 0.0431 (11) | −0.0004 (7) | 0.0007 (7) | 0.0002 (8) |
| C14 | 0.0236 (8) | 0.0259 (9) | 0.0299 (9) | −0.0024 (6) | 0.0028 (7) | 0.0046 (7) |
| C15 | 0.0223 (8) | 0.0304 (9) | 0.0283 (9) | −0.0073 (6) | 0.0021 (6) | 0.0022 (7) |
| C16 | 0.0204 (8) | 0.0276 (9) | 0.0225 (8) | −0.0011 (6) | −0.0003 (6) | −0.0027 (6) |
| C17 | 0.0319 (9) | 0.0243 (9) | 0.0291 (9) | 0.0023 (7) | 0.0012 (7) | −0.0005 (7) |
| C18 | 0.0324 (9) | 0.0346 (10) | 0.0330 (10) | 0.0088 (7) | 0.0013 (7) | −0.0074 (7) |
| C19 | 0.0252 (8) | 0.0393 (10) | 0.0297 (10) | −0.0011 (7) | 0.0067 (7) | −0.0085 (7) |
| C20 | 0.0284 (9) | 0.0333 (10) | 0.0274 (9) | −0.0055 (7) | 0.0037 (7) | 0.0010 (7) |
| C21 | 0.0247 (8) | 0.0268 (9) | 0.0250 (9) | 0.0005 (6) | 0.0006 (6) | 0.0004 (6) |
Geometric parameters (Å, º) top
| N1—N2 | 1.296 (2) | C8—H8B | 0.9700 |
| N1—C1 | 1.380 (2) | C9—C14 | 1.511 (2) |
| N2—N3 | 1.3619 (19) | C9—C10 | 1.517 (2) |
| N3—C6 | 1.366 (2) | C9—H9 | 0.9800 |
| N3—C7 | 1.471 (2) | C10—C11 | 1.529 (3) |
| N4—C7 | 1.432 (2) | C10—H10A | 0.9700 |
| N4—C9 | 1.460 (2) | C10—H10B | 0.9700 |
| N4—C8 | 1.465 (2) | C11—C12 | 1.531 (3) |
| N5—C15 | 1.433 (2) | C11—H11A | 0.9700 |
| N5—C14 | 1.464 (2) | C11—H11B | 0.9700 |
| N5—C8 | 1.476 (2) | C12—C13 | 1.535 (3) |
| N6—N7 | 1.357 (2) | C12—H12A | 0.9700 |
| N6—C16 | 1.367 (2) | C12—H12B | 0.9700 |
| N6—C15 | 1.476 (2) | C13—C14 | 1.513 (2) |
| N7—N8 | 1.307 (2) | C13—H13A | 0.9700 |
| N8—C21 | 1.378 (2) | C13—H13B | 0.9700 |
| C1—C6 | 1.389 (2) | C14—H14 | 0.9800 |
| C1—C2 | 1.408 (2) | C15—H15A | 0.9700 |
| C2—C3 | 1.375 (3) | C15—H15B | 0.9700 |
| C2—H2 | 0.9300 | C16—C21 | 1.391 (2) |
| C3—C4 | 1.409 (3) | C16—C17 | 1.402 (2) |
| C3—H3 | 0.9300 | C17—C18 | 1.374 (2) |
| C4—C5 | 1.370 (3) | C17—H17 | 0.9300 |
| C4—H4 | 0.9300 | C18—C19 | 1.406 (3) |
| C5—C6 | 1.397 (2) | C18—H18 | 0.9300 |
| C5—H5 | 0.9300 | C19—C20 | 1.369 (3) |
| C7—H7A | 0.9700 | C19—H19 | 0.9300 |
| C7—H7B | 0.9700 | C20—C21 | 1.410 (2) |
| C8—H8A | 0.9700 | C20—H20 | 0.9300 |
| | | |
| N2—N1—C1 | 108.00 (14) | C9—C10—H10A | 110.1 |
| N1—N2—N3 | 109.32 (13) | C11—C10—H10A | 110.1 |
| N2—N3—C6 | 109.70 (13) | C9—C10—H10B | 110.1 |
| N2—N3—C7 | 118.30 (13) | C11—C10—H10B | 110.1 |
| C6—N3—C7 | 131.64 (14) | H10A—C10—H10B | 108.4 |
| C7—N4—C9 | 119.73 (14) | C10—C11—C12 | 112.13 (16) |
| C7—N4—C8 | 115.44 (13) | C10—C11—H11A | 109.2 |
| C9—N4—C8 | 105.94 (13) | C12—C11—H11A | 109.2 |
| C15—N5—C14 | 118.03 (14) | C10—C11—H11B | 109.2 |
| C15—N5—C8 | 115.53 (13) | C12—C11—H11B | 109.2 |
| C14—N5—C8 | 106.11 (13) | H11A—C11—H11B | 107.9 |
| N7—N6—C16 | 109.79 (13) | C11—C12—C13 | 112.45 (16) |
| N7—N6—C15 | 121.24 (13) | C11—C12—H12A | 109.1 |
| C16—N6—C15 | 128.57 (14) | C13—C12—H12A | 109.1 |
| N8—N7—N6 | 109.28 (13) | C11—C12—H12B | 109.1 |
| N7—N8—C21 | 107.87 (14) | C13—C12—H12B | 109.1 |
| N1—C1—C6 | 108.83 (15) | H12A—C12—H12B | 107.8 |
| N1—C1—C2 | 130.01 (16) | C14—C13—C12 | 107.41 (14) |
| C6—C1—C2 | 121.12 (16) | C14—C13—H13A | 110.2 |
| C3—C2—C1 | 116.57 (16) | C12—C13—H13A | 110.2 |
| C3—C2—H2 | 121.7 | C14—C13—H13B | 110.2 |
| C1—C2—H2 | 121.7 | C12—C13—H13B | 110.2 |
| C2—C3—C4 | 121.44 (17) | H13A—C13—H13B | 108.5 |
| C2—C3—H3 | 119.3 | N5—C14—C9 | 100.73 (13) |
| C4—C3—H3 | 119.3 | N5—C14—C13 | 117.62 (14) |
| C5—C4—C3 | 122.54 (17) | C9—C14—C13 | 111.67 (14) |
| C5—C4—H4 | 118.7 | N5—C14—H14 | 108.8 |
| C3—C4—H4 | 118.7 | C9—C14—H14 | 108.8 |
| C4—C5—C6 | 115.99 (16) | C13—C14—H14 | 108.8 |
| C4—C5—H5 | 122.0 | N5—C15—N6 | 115.18 (13) |
| C6—C5—H5 | 122.0 | N5—C15—H15A | 108.5 |
| N3—C6—C1 | 104.14 (14) | N6—C15—H15A | 108.5 |
| N3—C6—C5 | 133.54 (16) | N5—C15—H15B | 108.5 |
| C1—C6—C5 | 122.31 (16) | N6—C15—H15B | 108.5 |
| N4—C7—N3 | 116.54 (13) | H15A—C15—H15B | 107.5 |
| N4—C7—H7A | 108.2 | N6—C16—C21 | 104.25 (14) |
| N3—C7—H7A | 108.2 | N6—C16—C17 | 133.15 (15) |
| N4—C7—H7B | 108.2 | C21—C16—C17 | 122.59 (15) |
| N3—C7—H7B | 108.2 | C18—C17—C16 | 115.60 (16) |
| H7A—C7—H7B | 107.3 | C18—C17—H17 | 122.2 |
| N4—C8—N5 | 104.68 (13) | C16—C17—H17 | 122.2 |
| N4—C8—H8A | 110.8 | C17—C18—C19 | 122.65 (16) |
| N5—C8—H8A | 110.8 | C17—C18—H18 | 118.7 |
| N4—C8—H8B | 110.8 | C19—C18—H18 | 118.7 |
| N5—C8—H8B | 110.8 | C20—C19—C18 | 121.58 (16) |
| H8A—C8—H8B | 108.9 | C20—C19—H19 | 119.2 |
| N4—C9—C14 | 99.64 (13) | C18—C19—H19 | 119.2 |
| N4—C9—C10 | 117.77 (14) | C19—C20—C21 | 117.01 (16) |
| C14—C9—C10 | 111.14 (14) | C19—C20—H20 | 121.5 |
| N4—C9—H9 | 109.3 | C21—C20—H20 | 121.5 |
| C14—C9—H9 | 109.3 | N8—C21—C16 | 108.80 (14) |
| C10—C9—H9 | 109.3 | N8—C21—C20 | 130.64 (16) |
| C9—C10—C11 | 107.98 (15) | C16—C21—C20 | 120.56 (15) |
| | | |
| N3—C7—N4—C8 | 56.8 (4) | C8—N5—C15—N6 | 55.5 (4) |
Hydrogen-bond geometry (Å, º) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| C8—H8a···N6 | 0.97 | 2.55 | 2.970 (2) | 106 |
| C8—H8b···N3 | 0.97 | 2.58 | 2.995 (2) | 106 |
| C7—H7b···N1i | 0.97 | 2.38 | 3.301 (2) | 159 |
| C15—H15b···N7ii | 0.97 | 2.62 | 3.504 (2) | 151 |
| Symmetry codes: (i) x, y−1, z; (ii) −x+1, y+1/2, −z+1/2. |
Experimental details
| Crystal data |
| Chemical formula | C21H24N8 |
| Mr | 388.48 |
| Crystal system, space group | Monoclinic, P21/c |
| Temperature (K) | 120 |
| a, b, c (Å) | 11.9474 (2), 5.9406 (1), 27.3861 (4) |
| β (°) | 90.861 (1) |
| V (Å3) | 1943.50 (5) |
| Z | 4 |
| Radiation type | Cu Kα |
| µ (mm−1) | 0.68 |
| Crystal size (mm) | 0.31 × 0.18 × 0.11 |
| |
| Data collection |
| Diffractometer | Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer |
| Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 37999, 3461, 2990 |
| Rint | 0.172 |
| (sin θ/λ)max (Å−1) | 0.598 |
| |
| Refinement |
| R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.137, 1.06 |
| No. of reflections | 3461 |
| No. of parameters | 262 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.23, −0.31 |
Hydrogen-bond geometry (Å, º) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| C7—H7b···N1i | 0.97 | 2.38 | 3.301 (2) | 159 |
| C15—H15b···N7ii | 0.97 | 2.62 | 3.504 (2) | 151 |
| Symmetry codes: (i) x, y−1, z; (ii) −x+1, y+1/2, −z+1/2. |
Among the most thoroughly studied stereoelectronic effects, the interactions between lone pairs have attracted much interest. These interactions between a non bonded electron pair and antibonding σ* sigma bonds usually play a feature role in the preferred conformations of such systems (Carey & Sundberg, 2000). The data of the crystal structure of the title compound indicate the occurrence of a n(N)→σ*(C—N) electron delocalization, characteristic of the anomeric effect, as evidenced by the lengthened bond N6—C15 [1.476 (2) Å], shortened bond C15—N5 [1.433 (2)] and distorted C—N—C bond angles, C8—N5—C14 = 106.11 (13)°, C8—N5—C15 = 115.53 (13)°, and C14—N5—C15 = 118.03 (14)°. These results exhibit the same pattern of C—N shortened bond lengths that the crystal structure of 1,3-bis[(1H-benzotriazol-1-yl)methyl]-2,3-dihydro-1H-benzimidazole recently reported (Rivera et al., 2011). The structural parameters suggest an increase in p-character of nitrogen and reduction in N-pyramidality. The title compound was obtained by the reaction of racemic cyclic aminal (2R,7R,11S,16S)-1,8,10,17-tetraazapentacyclo-[8.8.1.18,17.02,7.011,16]icosane with two equivalents of benzotriazole. The molecular structure and atom-numbering scheme are shown in Fig. 1. The asymmetric unit comprises of one molecule of the title compound (Fig 1). The bond lengths (Allen et al., 1987) and angles are generally within normal ranges (Wang et al., 2008).
The cyclohexane ring adopts a chair conformation and the five-membered ring to which it is fused adopts a twist conformation on C9—C14 with Q(2) = 0.455 (2) Å and ϕ = 311.1 (2)° (Cremer & Pople, 1975) and a trans disubstitution. The benzotriazole rings (N1—N3/C1—C6; N6—N8/C16—C21) are essentially planar with the maximum deviations from planarity being 0.0220 (19) Å for atom C3 and -0.0161 (19) for atom C18. The central heterocyclic ring makes an angle of 74.66 (8)° and 84.18 (8)° with the planar benzotriazole rings. The angle between the two benzotriazole rings is 30.80 (9)°. The two exocyclic bonds of methylene carbon atoms occupy pseudo-axial positions.
The crystal structure contains an intermolecular C7—H7B···N1 hydrogen bond between one H atom of the N—CH2—N group (aminal group) and one N atom of the benzotriazole ring of neighboring molecule linking adjacent molecules to form a one-dimensional chain running parallel to the b axis (Fig. 2), and further linked by weak C15—H15B···N intermolecular interactions. The distance of 3.4502 (9) Å between the centroids of the rings N1/N2/N3/C6/C1 related by the symmetry code (-x, 2 - y, -z) suggests a possible π–π interaction in the crystal.