3-(1-Pyridinio)propanesulfonate, C8H11NO3S, and 3-(benzyldimethylammonio)propanesulfonate monohydrate, C12H19NO3S·H2O, used as additives during protein refolding and crystallization, both crystallize in the monoclinic system in the P21/c space group, with one molecule (or one set of molecules) per asymmetric unit. The solvent water molecule present in the second crystal structure results in the formation of a dimer through hydrogen bonds. The conformation of the propanesulfonate moiety is similar in both structures.
Supporting information
CCDC references: 638328; 638329
Both NDSB-201 and NDSB-256 were purchased from ANATRACE. Crystallization was
performed at room temperature and the crystals used for X-ray diffraction
experiments were obtained by a slow evaporation method. NDSB-201 was
crystallized from a 1:1 mixture of methanol and 70% ethanol, while NDSB-256
was crystallized from 10% propionic acid.
All H atoms in NDSB-201, (I), were located in a difference map and their
position and isotropic displacement parameters were refined. In the case of
NDSB-256 monohydrate, (II), water H atoms were located in a difference map and
their positional and isotropic displacement parameters were refined. All other
H atoms were included in the refinement in calculated positions and refined
using a riding-model approximation, with C—H = 0.93 (aromatic CH), 0.96
(CH3) or 0.97 Å (CH2), and with Uiso(H) = 1.2Ueq(C)
for aromatic CH and CH2, or 1.5Ueq(C) for CH3.
For both compounds, data collection: HKL-2000 (Otwinowski & Minor, 1997); cell refinement: HKL-2000; data reduction: HKL-2000; program(s) used to solve structure: HKL-3000SM (Minor et al., 2006) and SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: HKL-3000SM and SHELXL97 (Sheldrick, 1997); molecular graphics: HKL-3000SM, ORTEPIII (Burnett & Johnson, 1996) and ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: HKL-3000SM.
(I) 3-(1-Pyridinio)propanesulfonate
top
Crystal data top
C8H11NO3S | F(000) = 424 |
Mr = 201.24 | Dx = 1.577 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54179 Å |
Hall symbol: -P 2ybc | Cell parameters from 3268 reflections |
a = 5.699 (1) Å | θ = 4.4–72.2° |
b = 7.428 (1) Å | µ = 3.20 mm−1 |
c = 20.053 (2) Å | T = 103 K |
β = 93.384 (7)° | Prism, colourless |
V = 847.4 (2) Å3 | 0.5 × 0.4 × 0.3 mm |
Z = 4 | |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 1641 independent reflections |
Radiation source: fine-focus sealed tube | 1636 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
Detector resolution: 10 pixels mm-1 | θmax = 72.2°, θmin = 4.4° |
ω scan with χ offset | h = −6→6 |
Absorption correction: multi-scan (Otwinowski et al., 2003) | k = −9→9 |
Tmin = 0.27, Tmax = 0.38 | l = −24→24 |
78761 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | All H-atom parameters refined |
wR(F2) = 0.082 | w = 1/[σ2(Fo2) + (0.0455P)2 + 0.5835P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
1641 reflections | Δρmax = 0.41 e Å−3 |
163 parameters | Δρmin = −0.45 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0253 (12) |
Crystal data top
C8H11NO3S | V = 847.4 (2) Å3 |
Mr = 201.24 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 5.699 (1) Å | µ = 3.20 mm−1 |
b = 7.428 (1) Å | T = 103 K |
c = 20.053 (2) Å | 0.5 × 0.4 × 0.3 mm |
β = 93.384 (7)° | |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 1641 independent reflections |
Absorption correction: multi-scan (Otwinowski et al., 2003) | 1636 reflections with I > 2σ(I) |
Tmin = 0.27, Tmax = 0.38 | Rint = 0.040 |
78761 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.082 | All H-atom parameters refined |
S = 1.05 | Δρmax = 0.41 e Å−3 |
1641 reflections | Δρmin = −0.45 e Å−3 |
163 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | −0.00770 (6) | 0.83978 (5) | 0.159230 (16) | 0.01668 (17) | |
N1 | 0.4608 (2) | 0.84861 (16) | 0.39284 (6) | 0.0167 (3) | |
O1 | 0.0688 (2) | 0.66014 (14) | 0.14014 (5) | 0.0230 (3) | |
O2 | −0.0243 (2) | 0.96490 (16) | 0.10312 (5) | 0.0261 (3) | |
O3 | −0.2196 (2) | 0.83503 (15) | 0.19639 (6) | 0.0226 (3) | |
C1 | 0.2196 (3) | 0.9280 (2) | 0.21447 (7) | 0.0174 (3) | |
C2 | 0.2502 (3) | 0.8275 (2) | 0.28063 (7) | 0.0187 (3) | |
C3 | 0.4438 (3) | 0.9207 (2) | 0.32337 (7) | 0.0178 (3) | |
C4 | 0.2831 (3) | 0.8816 (2) | 0.43264 (7) | 0.0186 (3) | |
C5 | 0.2941 (3) | 0.8204 (2) | 0.49755 (8) | 0.0212 (3) | |
C6 | 0.4912 (3) | 0.7266 (2) | 0.52197 (8) | 0.0220 (3) | |
C7 | 0.6703 (3) | 0.6924 (2) | 0.48025 (8) | 0.0213 (3) | |
C8 | 0.6512 (3) | 0.7542 (2) | 0.41522 (7) | 0.0188 (3) | |
H1A | 0.177 (3) | 1.052 (3) | 0.2221 (9) | 0.024 (5)* | |
H1B | 0.359 (3) | 0.925 (3) | 0.1905 (9) | 0.021 (4)* | |
H2A | 0.111 (3) | 0.832 (2) | 0.3021 (10) | 0.020 (5)* | |
H2B | 0.290 (4) | 0.704 (3) | 0.2750 (10) | 0.026 (5)* | |
H3A | 0.409 (3) | 1.052 (3) | 0.3265 (9) | 0.016 (4)* | |
H3B | 0.588 (4) | 0.902 (3) | 0.3068 (9) | 0.022 (5)* | |
H4 | 0.158 (3) | 0.951 (3) | 0.4142 (9) | 0.023 (5)* | |
H5 | 0.167 (4) | 0.845 (3) | 0.5242 (10) | 0.026 (5)* | |
H6 | 0.501 (4) | 0.683 (3) | 0.5671 (11) | 0.032 (5)* | |
H7 | 0.802 (4) | 0.627 (3) | 0.4957 (10) | 0.028 (5)* | |
H8 | 0.765 (3) | 0.734 (2) | 0.3841 (9) | 0.011 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0178 (3) | 0.0191 (2) | 0.0129 (2) | −0.00300 (12) | −0.00102 (14) | −0.00004 (12) |
N1 | 0.0193 (7) | 0.0171 (6) | 0.0135 (6) | −0.0007 (5) | −0.0007 (5) | −0.0008 (5) |
O1 | 0.0256 (6) | 0.0223 (6) | 0.0210 (6) | −0.0026 (4) | 0.0011 (5) | −0.0066 (4) |
O2 | 0.0314 (7) | 0.0287 (6) | 0.0172 (5) | −0.0092 (5) | −0.0074 (5) | 0.0071 (4) |
O3 | 0.0182 (6) | 0.0268 (6) | 0.0230 (6) | −0.0017 (4) | 0.0022 (5) | −0.0012 (4) |
C1 | 0.0190 (8) | 0.0189 (7) | 0.0138 (7) | −0.0019 (6) | −0.0012 (6) | −0.0003 (5) |
C2 | 0.0215 (9) | 0.0191 (8) | 0.0152 (7) | −0.0012 (5) | −0.0009 (6) | 0.0002 (5) |
C3 | 0.0204 (8) | 0.0212 (8) | 0.0118 (7) | −0.0008 (6) | −0.0001 (6) | 0.0014 (5) |
C4 | 0.0199 (8) | 0.0184 (7) | 0.0173 (7) | 0.0002 (6) | −0.0009 (6) | −0.0018 (6) |
C5 | 0.0248 (9) | 0.0219 (8) | 0.0172 (7) | −0.0036 (6) | 0.0040 (6) | −0.0021 (6) |
C6 | 0.0314 (9) | 0.0182 (7) | 0.0159 (7) | −0.0053 (6) | −0.0028 (6) | 0.0012 (6) |
C7 | 0.0259 (9) | 0.0172 (7) | 0.0200 (7) | 0.0009 (6) | −0.0065 (6) | 0.0003 (6) |
C8 | 0.0197 (8) | 0.0182 (7) | 0.0182 (7) | 0.0016 (6) | −0.0011 (6) | −0.0028 (6) |
Geometric parameters (Å, º) top
S1—O3 | 1.4564 (12) | C2—H2A | 0.92 (2) |
S1—O2 | 1.4581 (11) | C2—H2B | 0.96 (2) |
S1—O1 | 1.4618 (11) | C4—C5 | 1.377 (2) |
S1—C1 | 1.7791 (15) | C4—H4 | 0.94 (2) |
N1—C8 | 1.347 (2) | C3—H3A | 0.998 (19) |
N1—C4 | 1.348 (2) | C3—H3B | 0.91 (2) |
N1—C3 | 1.4901 (18) | C1—H1A | 0.96 (2) |
C7—C8 | 1.381 (2) | C1—H1B | 0.955 (19) |
C7—C6 | 1.381 (2) | C5—C6 | 1.387 (2) |
C7—H7 | 0.93 (2) | C5—H5 | 0.94 (2) |
C2—C3 | 1.523 (2) | C8—H8 | 0.939 (17) |
C2—C1 | 1.523 (2) | C6—H6 | 0.96 (2) |
| | | |
O3—S1—O2 | 113.08 (7) | N1—C3—C2 | 111.59 (12) |
O3—S1—O1 | 112.40 (7) | N1—C3—H3A | 107.2 (10) |
O2—S1—O1 | 112.74 (7) | C2—C3—H3A | 109.9 (10) |
O3—S1—C1 | 106.59 (7) | N1—C3—H3B | 105.9 (12) |
O2—S1—C1 | 104.91 (7) | C2—C3—H3B | 111.2 (12) |
O1—S1—C1 | 106.38 (7) | H3A—C3—H3B | 111.0 (16) |
C8—N1—C4 | 121.06 (13) | C2—C1—S1 | 113.79 (11) |
C8—N1—C3 | 120.34 (13) | C2—C1—H1A | 110.2 (11) |
C4—N1—C3 | 118.59 (13) | S1—C1—H1A | 105.6 (11) |
C8—C7—C6 | 119.42 (15) | C2—C1—H1B | 111.8 (11) |
C8—C7—H7 | 120.3 (12) | S1—C1—H1B | 106.1 (11) |
C6—C7—H7 | 120.2 (12) | H1A—C1—H1B | 109.0 (16) |
C3—C2—C1 | 108.02 (12) | C4—C5—C6 | 119.38 (15) |
C3—C2—H2A | 109.4 (12) | C4—C5—H5 | 118.5 (12) |
C1—C2—H2A | 109.2 (12) | C6—C5—H5 | 122.1 (12) |
C3—C2—H2B | 109.6 (12) | N1—C8—C7 | 120.32 (14) |
C1—C2—H2B | 112.7 (12) | N1—C8—H8 | 115.9 (10) |
H2A—C2—H2B | 107.9 (17) | C7—C8—H8 | 123.7 (10) |
N1—C4—C5 | 120.39 (14) | C7—C6—C5 | 119.40 (14) |
N1—C4—H4 | 116.5 (11) | C7—C6—H6 | 120.4 (13) |
C5—C4—H4 | 123.1 (11) | C5—C6—H6 | 120.2 (13) |
| | | |
C8—N1—C4—C5 | 0.6 (2) | O1—S1—C1—C2 | −66.24 (13) |
C3—N1—C4—C5 | −178.76 (13) | N1—C4—C5—C6 | 0.9 (2) |
C8—N1—C3—C2 | 112.58 (15) | C4—N1—C8—C7 | −1.4 (2) |
C4—N1—C3—C2 | −68.08 (17) | C3—N1—C8—C7 | 177.94 (13) |
C1—C2—C3—N1 | 171.33 (12) | C6—C7—C8—N1 | 0.7 (2) |
C3—C2—C1—S1 | −178.26 (11) | C8—C7—C6—C5 | 0.8 (2) |
O3—S1—C1—C2 | 53.89 (13) | C4—C5—C6—C7 | −1.6 (2) |
O2—S1—C1—C2 | 174.07 (11) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···O1i | 0.94 (2) | 2.26 (2) | 3.175 (2) | 165.6 (16) |
C3—H3A···O3i | 0.996 (19) | 2.397 (19) | 3.347 (2) | 159.2 (14) |
C7—H7···O2ii | 0.93 (2) | 2.41 (2) | 3.155 (2) | 136.5 (16) |
C5—H5···O1iii | 0.96 (2) | 2.41 (2) | 3.206 (2) | 139.8 (16) |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) x+1, −y+3/2, z+1/2; (iii) x, −y+3/2, z+1/2. |
(II) 3-(benzyldimethylammonio)propanesulfonate monohydrate
top
Crystal data top
C12H19NO3S·H2O | F(000) = 592.0 |
Mr = 275.37 | Dx = 1.356 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54179 Å |
Hall symbol: -P 2ybc | Cell parameters from 4731 reflections |
a = 12.628 (1) Å | θ = 3.7–72.1° |
b = 11.209 (1) Å | µ = 2.21 mm−1 |
c = 9.982 (1) Å | T = 103 K |
β = 107.260 (4)° | Block, colourless |
V = 1349.3 (2) Å3 | 0.45 × 0.15 × 0.11 mm |
Z = 4 | |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 2600 independent reflections |
Radiation source: fine-focus sealed tube | 2449 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.057 |
Detector resolution: 10.0 pixels mm-1 | θmax = 72.1°, θmin = 3.7° |
ω scans with χ offset | h = −15→15 |
Absorption correction: multi-scan (Otwinowski et al., 2003) | k = −13→12 |
Tmin = 0.710, Tmax = 0.780 | l = −12→12 |
36458 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.102 | w = 1/[σ2(Fo2) + (0.0464P)2 + 0.8011P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
2600 reflections | Δρmax = 0.36 e Å−3 |
172 parameters | Δρmin = −0.47 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0169 (8) |
Crystal data top
C12H19NO3S·H2O | V = 1349.3 (2) Å3 |
Mr = 275.37 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 12.628 (1) Å | µ = 2.21 mm−1 |
b = 11.209 (1) Å | T = 103 K |
c = 9.982 (1) Å | 0.45 × 0.15 × 0.11 mm |
β = 107.260 (4)° | |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 2600 independent reflections |
Absorption correction: multi-scan (Otwinowski et al., 2003) | 2449 reflections with I > 2σ(I) |
Tmin = 0.710, Tmax = 0.780 | Rint = 0.057 |
36458 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.102 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.36 e Å−3 |
2600 reflections | Δρmin = −0.47 e Å−3 |
172 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | −0.16405 (3) | 0.45690 (3) | 0.11564 (4) | 0.01951 (16) | |
O1 | −0.25915 (9) | 0.43190 (11) | 0.16517 (13) | 0.0254 (3) | |
O3 | −0.18342 (10) | 0.55699 (11) | 0.01727 (13) | 0.0272 (3) | |
O2 | −0.12445 (9) | 0.35111 (11) | 0.05952 (12) | 0.0246 (3) | |
N1 | 0.25781 (11) | 0.55913 (12) | 0.38614 (14) | 0.0196 (3) | |
O4 | 0.07127 (14) | 0.23489 (13) | 0.02042 (17) | 0.0386 (4) | |
C4 | 0.29428 (14) | 0.43633 (15) | 0.36072 (19) | 0.0252 (4) | |
H4A | 0.2534 | 0.4108 | 0.2680 | 0.038* | |
H4B | 0.2807 | 0.3823 | 0.4284 | 0.038* | |
H4C | 0.3721 | 0.4372 | 0.3695 | 0.038* | |
C7 | 0.39272 (13) | 0.65770 (14) | 0.27477 (16) | 0.0199 (3) | |
C8 | 0.43173 (13) | 0.58489 (15) | 0.18618 (17) | 0.0220 (3) | |
H8 | 0.3847 | 0.5291 | 0.1295 | 0.026* | |
C9 | 0.54056 (14) | 0.59521 (16) | 0.18203 (18) | 0.0248 (4) | |
H9 | 0.5662 | 0.5459 | 0.1234 | 0.030* | |
C5 | 0.32094 (14) | 0.60027 (17) | 0.53048 (16) | 0.0265 (4) | |
H5A | 0.2969 | 0.6790 | 0.5458 | 0.040* | |
H5B | 0.3988 | 0.6016 | 0.5396 | 0.040* | |
H5C | 0.3076 | 0.5466 | 0.5986 | 0.040* | |
C12 | 0.46323 (14) | 0.74345 (14) | 0.35624 (18) | 0.0230 (4) | |
H12 | 0.4374 | 0.7940 | 0.4134 | 0.028* | |
C6 | 0.27397 (12) | 0.64691 (14) | 0.27689 (16) | 0.0199 (3) | |
H6A | 0.2284 | 0.6217 | 0.1848 | 0.024* | |
H6B | 0.2481 | 0.7249 | 0.2953 | 0.024* | |
C2 | 0.05522 (13) | 0.51886 (17) | 0.24237 (17) | 0.0236 (4) | |
H2A | 0.0802 | 0.4457 | 0.2095 | 0.028* | |
H2B | 0.0493 | 0.5803 | 0.1721 | 0.028* | |
C10 | 0.61085 (14) | 0.67918 (16) | 0.26542 (18) | 0.0260 (4) | |
H10 | 0.6837 | 0.6856 | 0.2632 | 0.031* | |
C1 | −0.05666 (12) | 0.49942 (15) | 0.26788 (16) | 0.0217 (3) | |
H1A | −0.0783 | 0.5725 | 0.3047 | 0.026* | |
H1B | −0.0486 | 0.4381 | 0.3387 | 0.026* | |
C11 | 0.57233 (14) | 0.75362 (15) | 0.35221 (18) | 0.0253 (4) | |
H11 | 0.6193 | 0.8102 | 0.4076 | 0.030* | |
C3 | 0.13626 (13) | 0.55687 (15) | 0.38096 (17) | 0.0212 (4) | |
H3A | 0.1281 | 0.5032 | 0.4535 | 0.025* | |
H3B | 0.1157 | 0.6360 | 0.4036 | 0.025* | |
H1 | 0.110 (2) | 0.289 (3) | 0.004 (3) | 0.051 (7)* | |
H2 | 0.013 (3) | 0.270 (3) | 0.030 (3) | 0.065 (9)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0173 (2) | 0.0194 (2) | 0.0217 (2) | −0.00192 (13) | 0.00557 (16) | 0.00048 (13) |
O1 | 0.0181 (6) | 0.0280 (6) | 0.0319 (6) | −0.0030 (5) | 0.0103 (5) | 0.0004 (5) |
O3 | 0.0259 (6) | 0.0238 (6) | 0.0288 (7) | −0.0029 (5) | 0.0031 (5) | 0.0074 (5) |
O2 | 0.0236 (6) | 0.0248 (6) | 0.0253 (6) | −0.0004 (5) | 0.0071 (5) | −0.0052 (5) |
N1 | 0.0179 (7) | 0.0210 (7) | 0.0192 (7) | 0.0008 (5) | 0.0043 (5) | 0.0002 (5) |
O4 | 0.0414 (9) | 0.0231 (7) | 0.0574 (9) | 0.0000 (6) | 0.0240 (7) | 0.0062 (6) |
C4 | 0.0247 (9) | 0.0202 (8) | 0.0313 (9) | 0.0050 (6) | 0.0093 (7) | 0.0034 (7) |
C7 | 0.0185 (8) | 0.0200 (8) | 0.0198 (7) | 0.0015 (6) | 0.0036 (6) | 0.0039 (6) |
C8 | 0.0217 (8) | 0.0222 (8) | 0.0214 (8) | 0.0008 (6) | 0.0052 (6) | 0.0019 (6) |
C9 | 0.0243 (8) | 0.0262 (9) | 0.0252 (8) | 0.0040 (7) | 0.0097 (7) | 0.0046 (7) |
C5 | 0.0231 (8) | 0.0356 (10) | 0.0183 (8) | −0.0035 (7) | 0.0022 (6) | −0.0004 (7) |
C12 | 0.0231 (8) | 0.0198 (8) | 0.0248 (8) | 0.0010 (6) | 0.0053 (6) | 0.0013 (6) |
C6 | 0.0196 (8) | 0.0197 (8) | 0.0198 (7) | 0.0008 (6) | 0.0050 (6) | 0.0008 (6) |
C2 | 0.0183 (8) | 0.0309 (9) | 0.0211 (8) | −0.0016 (7) | 0.0049 (6) | −0.0003 (7) |
C10 | 0.0199 (8) | 0.0278 (9) | 0.0305 (9) | 0.0026 (7) | 0.0081 (7) | 0.0092 (7) |
C1 | 0.0200 (8) | 0.0245 (9) | 0.0208 (8) | −0.0016 (6) | 0.0065 (6) | −0.0018 (6) |
C11 | 0.0217 (8) | 0.0224 (9) | 0.0290 (9) | −0.0024 (6) | 0.0034 (7) | 0.0041 (6) |
C3 | 0.0173 (8) | 0.0244 (8) | 0.0230 (8) | −0.0001 (6) | 0.0079 (6) | −0.0008 (6) |
Geometric parameters (Å, º) top
S1—O1 | 1.4552 (11) | C9—H9 | 0.9300 |
S1—O2 | 1.4616 (12) | C5—H5A | 0.9600 |
S1—O3 | 1.4629 (12) | C5—H5B | 0.9600 |
S1—C1 | 1.7756 (16) | C5—H5C | 0.9600 |
N1—C4 | 1.497 (2) | C12—C11 | 1.395 (2) |
N1—C5 | 1.497 (2) | C12—H12 | 0.9300 |
N1—C3 | 1.5207 (19) | C6—H6A | 0.9700 |
N1—C6 | 1.527 (2) | C6—H6B | 0.9700 |
O4—H1 | 0.83 (3) | C2—C3 | 1.517 (2) |
O4—H2 | 0.87 (3) | C2—C1 | 1.524 (2) |
C4—H4A | 0.9600 | C2—H2A | 0.9700 |
C4—H4B | 0.9600 | C2—H2B | 0.9700 |
C4—H4C | 0.9600 | C10—C11 | 1.390 (2) |
C7—C12 | 1.396 (2) | C10—H10 | 0.9300 |
C7—C8 | 1.396 (2) | C1—H1A | 0.9700 |
C7—C6 | 1.511 (2) | C1—H1B | 0.9700 |
C8—C9 | 1.392 (2) | C11—H11 | 0.9300 |
C8—H8 | 0.9300 | C3—H3A | 0.9700 |
C9—C10 | 1.389 (3) | C3—H3B | 0.9700 |
| | | |
O1—S1—O2 | 112.62 (7) | C11—C12—C7 | 120.29 (16) |
O1—S1—O3 | 112.66 (7) | C11—C12—H12 | 119.9 |
O2—S1—O3 | 111.90 (7) | C7—C12—H12 | 119.9 |
O1—S1—C1 | 104.99 (7) | C7—C6—N1 | 113.90 (12) |
O2—S1—C1 | 106.53 (7) | C7—C6—H6A | 108.8 |
O3—S1—C1 | 107.57 (7) | N1—C6—H6A | 108.8 |
C4—N1—C5 | 110.09 (13) | C7—C6—H6B | 108.8 |
C4—N1—C3 | 109.70 (12) | N1—C6—H6B | 108.8 |
C5—N1—C3 | 106.36 (12) | H6A—C6—H6B | 107.7 |
C4—N1—C6 | 111.01 (12) | C3—C2—C1 | 107.20 (13) |
C5—N1—C6 | 110.06 (12) | C3—C2—H2A | 110.3 |
C3—N1—C6 | 109.51 (12) | C1—C2—H2A | 110.3 |
H1—O4—H2 | 106 (3) | C3—C2—H2B | 110.3 |
N1—C4—H4A | 109.5 | C1—C2—H2B | 110.3 |
N1—C4—H4B | 109.5 | H2A—C2—H2B | 108.5 |
H4A—C4—H4B | 109.5 | C9—C10—C11 | 120.05 (15) |
N1—C4—H4C | 109.5 | C9—C10—H10 | 120.0 |
H4A—C4—H4C | 109.5 | C11—C10—H10 | 120.0 |
H4B—C4—H4C | 109.5 | C2—C1—S1 | 113.95 (11) |
C12—C7—C8 | 119.18 (15) | C2—C1—H1A | 108.8 |
C12—C7—C6 | 120.75 (14) | S1—C1—H1A | 108.8 |
C8—C7—C6 | 120.02 (14) | C2—C1—H1B | 108.8 |
C9—C8—C7 | 120.48 (15) | S1—C1—H1B | 108.8 |
C9—C8—H8 | 119.8 | H1A—C1—H1B | 107.7 |
C7—C8—H8 | 119.8 | C10—C11—C12 | 120.00 (16) |
C10—C9—C8 | 119.98 (16) | C10—C11—H11 | 120.0 |
C10—C9—H9 | 120.0 | C12—C11—H11 | 120.0 |
C8—C9—H9 | 120.0 | C2—C3—N1 | 115.89 (13) |
N1—C5—H5A | 109.5 | C2—C3—H3A | 108.3 |
N1—C5—H5B | 109.5 | N1—C3—H3A | 108.3 |
H5A—C5—H5B | 109.5 | C2—C3—H3B | 108.3 |
N1—C5—H5C | 109.5 | N1—C3—H3B | 108.3 |
H5A—C5—H5C | 109.5 | H3A—C3—H3B | 107.4 |
H5B—C5—H5C | 109.5 | | |
| | | |
C12—C7—C8—C9 | 1.8 (2) | C3—C2—C1—S1 | 178.84 (11) |
C6—C7—C8—C9 | 179.13 (14) | O1—S1—C1—C2 | 174.61 (12) |
C7—C8—C9—C10 | −0.6 (2) | O2—S1—C1—C2 | 54.95 (14) |
C8—C7—C12—C11 | −1.9 (2) | O3—S1—C1—C2 | −65.18 (14) |
C6—C7—C12—C11 | −179.21 (14) | C9—C10—C11—C12 | 0.4 (2) |
C12—C7—C6—N1 | −91.30 (18) | C7—C12—C11—C10 | 0.8 (2) |
C8—C7—C6—N1 | 91.45 (17) | C1—C2—C3—N1 | 169.21 (13) |
C4—N1—C6—C7 | −59.71 (17) | C4—N1—C3—C2 | −61.69 (18) |
C5—N1—C6—C7 | 62.44 (17) | C5—N1—C3—C2 | 179.27 (14) |
C3—N1—C6—C7 | 179.02 (13) | C6—N1—C3—C2 | 60.38 (18) |
C8—C9—C10—C11 | −0.5 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H1···O3i | 0.83 (3) | 2.00 (3) | 2.812 (2) | 167 (3) |
O4—H2···O2 | 0.87 (3) | 2.05 (3) | 2.921 (2) | 178 (3) |
Symmetry code: (i) −x, −y+1, −z. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C8H11NO3S | C12H19NO3S·H2O |
Mr | 201.24 | 275.37 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c |
Temperature (K) | 103 | 103 |
a, b, c (Å) | 5.699 (1), 7.428 (1), 20.053 (2) | 12.628 (1), 11.209 (1), 9.982 (1) |
β (°) | 93.384 (7) | 107.260 (4) |
V (Å3) | 847.4 (2) | 1349.3 (2) |
Z | 4 | 4 |
Radiation type | Cu Kα | Cu Kα |
µ (mm−1) | 3.20 | 2.21 |
Crystal size (mm) | 0.5 × 0.4 × 0.3 | 0.45 × 0.15 × 0.11 |
|
Data collection |
Diffractometer | Rigaku R-AXIS RAPID diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (Otwinowski et al., 2003) | Multi-scan (Otwinowski et al., 2003) |
Tmin, Tmax | 0.27, 0.38 | 0.710, 0.780 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 78761, 1641, 1636 | 36458, 2600, 2449 |
Rint | 0.040 | 0.057 |
(sin θ/λ)max (Å−1) | 0.618 | 0.617 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.082, 1.05 | 0.039, 0.102, 1.08 |
No. of reflections | 1641 | 2600 |
No. of parameters | 163 | 172 |
H-atom treatment | All H-atom parameters refined | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.45 | 0.36, −0.47 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···O1i | 0.94 (2) | 2.26 (2) | 3.175 (2) | 165.6 (16) |
C3—H3A···O3i | 0.996 (19) | 2.397 (19) | 3.347 (2) | 159.2 (14) |
C7—H7···O2ii | 0.93 (2) | 2.41 (2) | 3.155 (2) | 136.5 (16) |
C5—H5···O1iii | 0.96 (2) | 2.41 (2) | 3.206 (2) | 139.8 (16) |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) x+1, −y+3/2, z+1/2; (iii) x, −y+3/2, z+1/2. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H1···O3i | 0.83 (3) | 2.00 (3) | 2.812 (2) | 167 (3) |
O4—H2···O2 | 0.87 (3) | 2.05 (3) | 2.921 (2) | 178 (3) |
Symmetry code: (i) −x, −y+1, −z. |
Non-detergent sulfobetaines (NDSBs), to which the title compounds belong, are zwitterionic molecules. NDSB-201 or 3-(1-pyridino)-1-propane sulfonate, (I), and NDSB-256 or 3-(benzyldimethylammonio)propane sulfonate, of which the monohydrate structure, (II), is reported here, are members of a larger family of compounds that was mainly developed to facilitate protein solubilization, as well as for improvement of protein stability (Vuillard et al., 1995). It was discovered that compounds from this group are very useful during protein refolding (Goldberg et al. 1995; Vuillard et al., 1998; Expert-Bezançon et al. 2003; Swope Willis et al., 2006) and purification (Vuillard et al., 1995). NDSBs prevent protein aggregation and are used as additives to protein solution in isoelectric focusing. Recently, Collins et al. (2006) demonstrated the usefulness of NDSB-201 in differential scanning calorimetry. The properties of NDSBs with respect to protein solutions have also been noticed by protein crystallographers (Vuillard et al., 1994, 1996). During crystallization, a protein has to be stable in highly concentrated solution for a prolonged period of time, and the presence of chemicals preventing the formation of an amorphous precipitate could be crucial for the success of a crystallization experiment.
NDSB-201 and NDSB-256 crystallize in the P21/c space group, with one molecule or one set of molecules per asymmetric unit (Fig. 1). Both compounds have aromatic rings that influence packing in the crystal structures. Weak interactions also play an important role in crystal packing, especially in the case of the structure of (I). Listed in Table 1 are the contacts between H and O atoms that are at least 0.3 Å shorter than the sum of the van der Waals radii. In the case of (II), important for the packing are hydrogen bonds mediated by water molecules (Table 2). The NDSB-256 molecule in the structure of (II) forms dimers, and their formation is intermediated by water molecules (Fig. 2). The hydrogen-bonding pattern corresponds to an R44(12) motif as described by Bernstein et al. (1995). Atom O1, which does not form hydogen bonds with water molecules, is involved in short contacts with benzyl atom H6B and atom H9 from the aromatic ring. The distances H6B···O1(-x, 1/2 + y, 1/2 - z) and H9···O1(1 + x, y, z) are 2.35 and 2.48 Å, respectively, while the distances C6···O1(-x, 1/2 + y, 1/2 - z) and C9···O1(1 + x, y, z) are 3.262 (2) and 3.167 (2) Å, respectively. The angles C6—H6B···O1(-x, 1/2 + y, 1/2 - z) and C9—H9···O1(1 + x, y, z) are 156 and 131°, respectively.
NDSBs with a three-carbon bridge between the S and N atoms (sulfopropyl non-detergent betaines) have been found to be superior for work with proteins (Vuillard et al., 1995). It was proposed that a sulfopropyl NDSB may adopt a cyclic conformation, with a six-atom ring and an ionic link between N+ and SO3- in a solution. The resulting hydrocarbon cluster might take part in hydrophobic protein–protein interactions. Our results show that for NDSB-201 and NDSB-256 such a conformation of the sulfopropyl moiety is not observed in the crystal structures, but of course it cannot be concluded that at least some of the molecules do not adopt the cyclic conformation in solution. In the crystal structures reported by us, the torsion angles S1—C1—C2—C3 and C1—C2—C3—N1 are -178.3 (1) and 171.3 (1)°, respectively, for NDSB-201, while for NDSB-256 they are 178.8 (1) and 169.2 (1)°, respectively.
In the Cambridge Structural Database (CSD, Version 5.27, updated January 2006; Allen, 2002), there are 12 structures with the sulfopropyl moiety attached to an N atom, forming ternary or quaternary amines. In the structures reported in the CSD, there is also no example in which the cyclic conformation of the +N—CH2—CH2—CH2—SO3- fragment is observed. It is also quite surprising that, although NDSB molecules are quite often used during protein refolding, there are only a few structures in the Protein Data Bank (PDB; Berman et al., 2000) for which the use of non-detergent sulfobetaines is reported in REMARK 280 (REMARK 280 contains information about crystals, solvent content and crystallization conditions) [Is this a program or a book? Reference?]. A sarch of the PDB in September 2006 revealed that for only six structures were NDSBs used for crystallization. NDSB-195 was used in two cases (PDB codes 2AUW and 2 G4B), NDSB-201 was used in three cases (PDB codes 1 NAX, 1UA2 and 2 F GC), and the usage of NDSB-256 was reported in only one case (PDB code 2 F96). It was noted that the application of NDSB-201 (Lolli et al., 2004) helped to prevent excessive nucleation and promoted crystal growth. Most probably the influence of compounds from the NDSB family in protein solution is similar to that observed in the case of arginine (Baynes & Trout, 2004) and NDSBs may be treated as `neutral crowder' additives (Baynes & Trout, 2004).