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The title compound, C18H35NO4, is a new bioactive amphiphilic lipid with a cis-substituted 1,3-oxazolidin-2-one head group. In the crystal structure, the mol­ecules form intercalating bilayers in which the oxazolidinone head groups are joined together by hydrogen bonds into chains.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270103005493/fa1009sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270103005493/fa1009Isup2.hkl
Contains datablock I

CCDC reference: 214152

Comment top

In the course of the synthesis of conformationally restricted sphingolipid analogues (Brodesser et al., 2003; Kolter, 2003), the precursor (II) of the title compound, (I), was prepared from Garner's aldehyde (Garner et al., 1988) according to Sawatzki (2003). Compound (I) was demonstrated to be an inhibitor of sphinganine hydroxylation and a potent mitogen in S. cerevisiae (Sawatzki, 2003). Removal of the benzoate and isopropylidene protective groups in (II) afforded (I).

The structure of (I) with the atom-numbering is shown in Fig. 1. Selected geometrical parameters are listed in Table 1. The 1,3-oxazolidin-2-one ring adopts an open envelope conformation, with atom C2 out of the plane. The intra-ring bond lengths C5—N1 and C4—O3, which are opposite each other, are similar; also the lengths of the adjacent bonds N1—C2 and O3—C2 within the ring show comparable similarity, with a maximum deviation of 0.03 Å. The intra-ring bond angles, however, are different and range from 98.57 (13) to 113.34 (12)°. The pseudo-axially arranged dihydroxyethyl and alkyl substituents at the 4- and 5- positions of the oxazolidinone ring are in a cisoid configuration. Both substituents show a distorted synperiplanar conformation, with a C8—C4—C5—C6 torsion angle of 21.9 (2)°, whereas within the dihydroxyethyl moiety, the OH groups are in a fully staggered relationship, with a O6—C6—C7—O7 torsion angle of −179.55 (13)°. The conformation of the tridecyl chain is as most often found for larger alkanes, i.e. staggered with the largest substituents at any C—C bond antiperiplanar to each other. The average C—C bond length within the chain is 1.527 (2) Å [range 1.524 (2)–1.530 (2) Å] and the average angle is 113 (2)° [range 112.6 (1)–113.9 (2)°]. These values are similar to those found in related amphiphilic lipids (Ramos Silva et al., 2000; Matos Beja et al., 2001). The zigzag tridecyl backbone shows a significant deviation from planarity, being bent towards atom C9; the deviation from the ideal torsion angle of 180° for C8—C9—C10—C11 is 4.10 (14)°. Also, the bond lengths C8—C9 and C9—C10 appear to diverge slightly from the average bond length found in the alkyl chain. A weaker second bend can be found at C16—C17—C18—C19 of the hydrocarbon chain [deviation 2.41 (14)°].

Three intermolecular hydrogen bonds of normal strength (Steiner, 2002) are present (Table 2), forming a nearly linear arrangement in the crystal. The greatest deviation from the ideal angle of 180° is 19.0 (2)° for the strongest hydrogen bond O7—H7O···O2. In the crystal structure, the molecule forms an intercalating bilayer generated by the 21 axis, with a lipophilic core and a hydrophilic surface (Fig. 2). The molecular packing is such that the hydrocarbon chains lie side by side, thereby forming alternating layers of carbon tails and oxazolidin-2-one heads. The hydrophilic heads are connected by a network of hydrogen bonds involving the two hydroxyl groups, the carbonyl group and an amide group, viz. O6—H6O···O7ii, O7—H7O···O2iii and N1—H1N···O7i (see Table 2 for symmetry codes and geometric details). The O7—H7O hydroxy group is involved in three hydrogen bonds. It acts as a hydrogen-bond acceptor and donor in the network connecting the hydrophilic heads of the bilayer. The 21 axis further relates each bilayer to its neighbours. Each bilayer is connected to the next via a hydrogen bond between the N1 amino group as donor and the O7 hydroxy group as acceptor. These hydrogen bonds join the oxazolidinone moieties of the molecules head-to-head within and also between the layers (Fig. 3).

Experimental top

The starting material (1S,8R,8aS)-5,5-dimethyl-1-tridecyl-3- oxotetrahydro[1,3]oxazolo[3,4-c][1,3]oxazin-8-yl benzoate, (II), was prepared from Garners aldehyde (Garner et al., 1988; Campbell et al., 1998). In brief, Garner's aldehyde is elongated by a Wittig reaction with a long-chain phosphorous ylide followed by an intramolecular iodolactonization (Ageno et al., 1995) of the Z-olefin. Molecular rearrangement induced by silver acetate in acetic acid followed by exchange of benzoyl for acetyl protection with inversion of configuration at C8 afforded (II) (Sawatzki, 2003). Glassware was flame dried under an argon atmosphere and allowed to cool. Compound (II) (207.1 mg, 437.3 µmol) was dissolved in methanol and a catalytic amount of sodium hydroxide in methanol (1 M) added. Stirring was continued for 18 h and the solvent evaporated under reduced pressure. The residue was dissolved in THF/0.5 M HCl (1:1) and stirred at 353 K for 18 h under reflux. After cooling to ambient temperature, the solution was neutralized with saturated sodium hydrogencarbonate solution and concentrated under reduced pressure. The residue was extracted with chloroform and the organic phase dried over sodium sulfate. After evaporation of the solvent, the residue obtained was purified by column chromatography on silica gel with chloroform/methanol (10:1) as eluant (yield: 122.9 mg, 85.3%). The purification afforded a few colourless crystals suitable for X-ray analysis. TLC: 10:1 chloroform-methanol, RF = 0.41; m.p.: 365 K (sharp); αD = −16.1° (c = 0.26 in MeOH/CHCl3 1:1); 1H NMR (500 MHz, CD3OD/CDCl3 1:1): δ 0.86 (t, J = 7 Hz, 3H; CH3), 1.25 (m, 16H; CH2), 1.36 (m, 4H; CH2), 1.56 (m, 2H; CH2), 1.69 (m, 1H; CH2), 1.97 (m, 1H; CH2), 3.50 (td, J = 5.7 Hz, J = 11.5 Hz, 1H; CH2OH), 3.54 (td, J = 5.7 Hz, J = 11.5 Hz, 1H; CH2OH), 3.72 (dt, J = 2.2 Hz, J = 5.7 Hz, 1H; H-5), 3.81 (dd, J = 2.2 Hz, J = 7.8 Hz, 1H; H-4), 4.63 (ddd, J = 3.8 Hz, J = 7.8 Hz, J = 10.1 Hz, 1H; H-1'); 13C NMR (100 MHz, CD3OD/CDCl3 1:1): δ 14.9 (CH3), 23.9–33.2 (CH2), 58.1 (C-5), 65.1 (CH2OH), 70.1 (C-4), 81.9 (C-1'), 162.8 (C-2); FAB-MS (3-nitrobenzoic acid): m/z = 330 (M + H)+; IR: 1697.7 cm−1.

Refinement top

Friedel pairs were merged prior to the final refinement. The absolute configuration of (I) was assigned to agree with the chirality established by the synthesis. The positions of the amide H atom and the hydroxy H atoms were determined from a difference Fourier map and the coordinates were refined freely, with isotropic displacement parameters constrained to Uiso(H) = 1.2Ueq (N) and 1.5Ueq (O). All remaining H atoms were treated as riding, with C—H = 0.98–1.00 Å and Uiso(H) = 1.2Ueq (CH, CH2) and 1.5Ueq (CH3).

Computing details top

Data collection: COLLECT (Nonius, 1997-2000); cell refinement: DENZO–SMN (Otwinowski & Minor, 1997); data reduction: DENZO–SMN; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL-NT (Sheldrick, 2001); software used to prepare material for publication: SHELXL97.

Figures top
[Figure 1] Fig. 1. The structure of (I), showing the atom-numbering scheme and displacement ellipsoids at the 50% probability level for non-H atoms.
[Figure 2] Fig. 2. The packing of the hydrocarbon chains in the crystal structure, with alternating layers of carbon tails and oxazolidin-2-one head groups.
[Figure 3] Fig. 3. View of the unit-cell packing, showing the network of hydrogen bonds as dashed lines.
(4S,5S)-4-[(1R)-1,2-Dihydroxyethyl]-5-tridecyl-1,3-oxazolidin-2-one top
Crystal data top
C18H35NO4F(000) = 364
Mr = 329.47Dx = 1.203 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 5.4040 (2) ÅCell parameters from 9695 reflections
b = 7.6062 (4) Åθ = 2–28.3°
c = 22.1898 (11) ŵ = 0.08 mm1
β = 94.208 (3)°T = 123 K
V = 909.63 (7) Å3Plates, colourless
Z = 20.50 × 0.40 × 0.02 mm
Data collection top
Nonius KappaCCD
diffractometer
2037 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.043
Graphite monochromatorθmax = 28.3°, θmin = 3.3°
rotation in ϕ and ω (1°) scansh = 77
10314 measured reflectionsk = 1010
2337 independent reflectionsl = 2829
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084 w = 1/[σ2(Fo2) + (0.0547P)2]
where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2337 reflectionsΔρmax = 0.22 e Å3
217 parametersΔρmin = 0.21 e Å3
1 restraintAbsolute structure: Flack (1983), 2076 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.6 (10)
Crystal data top
C18H35NO4V = 909.63 (7) Å3
Mr = 329.47Z = 2
Monoclinic, P21Mo Kα radiation
a = 5.4040 (2) ŵ = 0.08 mm1
b = 7.6062 (4) ÅT = 123 K
c = 22.1898 (11) Å0.50 × 0.40 × 0.02 mm
β = 94.208 (3)°
Data collection top
Nonius KappaCCD
diffractometer
2037 reflections with I > 2σ(I)
10314 measured reflectionsRint = 0.043
2337 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084Δρmax = 0.22 e Å3
S = 1.01Δρmin = 0.21 e Å3
2337 reflectionsAbsolute structure: Flack (1983), 2076 Friedel pairs
217 parametersAbsolute structure parameter: 0.6 (10)
1 restraint
Special details top

Experimental. dx = 40 mm, 150 sec./°., 1 °., 4 sets., 486 frames, mos.= 0.855 (2) °.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The data are merged (use of MERG 3). Not merging the friedel pairs (2076) achive a flack parameter (x = 0.0 (8)), which corresponds to the known absoltue configuration.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N11.3064 (3)0.6374 (2)0.91674 (6)0.0195 (3)
H1N1.401 (4)0.628 (3)0.9488 (9)0.023*
C21.1842 (3)0.4973 (2)0.89448 (7)0.0190 (3)
O21.1740 (2)0.35029 (18)0.91611 (5)0.0260 (3)
O31.0645 (2)0.53724 (17)0.84029 (5)0.0211 (3)
C41.1393 (3)0.7131 (2)0.82316 (7)0.0169 (3)
H41.27810.70090.79600.020*
C51.2460 (3)0.7976 (2)0.88307 (6)0.0161 (3)
H51.40380.85990.87550.019*
C61.0807 (3)0.9224 (2)0.91563 (7)0.0176 (3)
H61.03991.02620.88910.021*
O60.8561 (2)0.83364 (18)0.92720 (5)0.0226 (3)
H6O0.761 (4)0.914 (3)0.9416 (9)0.034*
C71.2094 (3)0.9861 (2)0.97516 (7)0.0187 (3)
H7A1.09651.06550.99550.022*
H7B1.24640.88411.00200.022*
O71.4355 (2)1.07753 (18)0.96579 (5)0.0210 (3)
H7O1.388 (4)1.168 (4)0.9540 (10)0.032*
C80.9229 (3)0.8002 (2)0.78716 (7)0.0193 (3)
H8A0.96290.92530.78030.023*
H8B0.77420.79570.81060.023*
C90.8664 (3)0.7090 (3)0.72625 (7)0.0214 (4)
H9A0.82360.58460.73360.026*
H9B1.01790.71030.70370.026*
C100.6542 (3)0.7940 (3)0.68708 (7)0.0212 (4)
H10A0.49960.78480.70820.025*
H10B0.69110.92040.68210.025*
C110.6125 (3)0.7097 (3)0.62486 (7)0.0226 (4)
H11A0.57710.58310.62990.027*
H11B0.76690.71970.60370.027*
C120.3997 (3)0.7928 (3)0.58562 (7)0.0230 (4)
H12A0.43270.92010.58150.028*
H12B0.24430.78000.60620.028*
C130.3628 (3)0.7114 (3)0.52266 (7)0.0244 (4)
H13A0.51750.72550.50190.029*
H13B0.33180.58380.52680.029*
C140.1484 (3)0.7928 (3)0.48369 (7)0.0241 (4)
H14A0.17900.92040.47960.029*
H14B0.00650.77830.50440.029*
C150.1129 (3)0.7114 (3)0.42079 (7)0.0243 (4)
H15A0.26720.72750.40000.029*
H15B0.08510.58350.42500.029*
C160.1033 (3)0.7898 (3)0.38166 (7)0.0236 (4)
H16A0.07420.91730.37670.028*
H16B0.25740.77560.40270.028*
C170.1399 (3)0.7051 (3)0.31923 (7)0.0230 (4)
H17A0.01360.72070.29810.028*
H17B0.16620.57730.32430.028*
C180.3579 (3)0.7803 (3)0.27979 (7)0.0219 (4)
H18A0.32840.90710.27310.026*
H18B0.51070.76920.30150.026*
C190.3981 (3)0.6887 (2)0.21858 (7)0.0211 (4)
H19A0.24690.70220.19640.025*
H19B0.42420.56160.22520.025*
C200.6198 (3)0.7623 (3)0.18013 (7)0.0250 (4)
H20A0.63760.69960.14150.038*
H20B0.59350.88770.17270.038*
H20C0.77080.74690.20150.038*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0246 (7)0.0148 (7)0.0180 (6)0.0020 (6)0.0059 (6)0.0017 (6)
C20.0203 (7)0.0176 (8)0.0190 (7)0.0038 (6)0.0013 (6)0.0001 (6)
O20.0326 (6)0.0159 (6)0.0289 (6)0.0002 (5)0.0010 (5)0.0037 (5)
O30.0255 (6)0.0150 (6)0.0218 (6)0.0032 (5)0.0049 (4)0.0002 (5)
C40.0175 (7)0.0169 (8)0.0160 (7)0.0031 (6)0.0019 (6)0.0008 (6)
C50.0168 (7)0.0142 (8)0.0165 (7)0.0020 (6)0.0034 (5)0.0021 (6)
C60.0172 (7)0.0165 (8)0.0185 (7)0.0028 (6)0.0031 (6)0.0020 (6)
O60.0193 (5)0.0205 (7)0.0281 (6)0.0043 (5)0.0030 (5)0.0046 (5)
C70.0214 (7)0.0154 (8)0.0187 (7)0.0015 (6)0.0020 (6)0.0003 (6)
O70.0218 (6)0.0161 (6)0.0240 (6)0.0028 (5)0.0057 (4)0.0015 (5)
C80.0209 (7)0.0187 (9)0.0173 (7)0.0013 (7)0.0041 (6)0.0004 (7)
C90.0212 (7)0.0243 (9)0.0180 (7)0.0001 (7)0.0042 (6)0.0010 (7)
C100.0203 (7)0.0247 (10)0.0179 (7)0.0007 (7)0.0040 (6)0.0008 (7)
C110.0225 (8)0.0289 (10)0.0156 (7)0.0005 (7)0.0039 (6)0.0006 (7)
C120.0219 (7)0.0284 (10)0.0176 (7)0.0003 (7)0.0047 (6)0.0007 (7)
C130.0233 (8)0.0308 (10)0.0184 (7)0.0004 (8)0.0044 (6)0.0001 (7)
C140.0221 (8)0.0313 (10)0.0182 (7)0.0001 (7)0.0037 (6)0.0008 (7)
C150.0216 (8)0.0314 (11)0.0190 (7)0.0009 (8)0.0044 (6)0.0011 (7)
C160.0212 (7)0.0293 (10)0.0196 (7)0.0008 (7)0.0031 (6)0.0005 (7)
C170.0205 (8)0.0291 (10)0.0187 (7)0.0018 (7)0.0030 (6)0.0010 (7)
C180.0201 (7)0.0239 (10)0.0209 (7)0.0024 (7)0.0025 (6)0.0007 (7)
C190.0200 (7)0.0241 (10)0.0187 (7)0.0005 (7)0.0014 (6)0.0008 (7)
C200.0206 (8)0.0328 (11)0.0212 (7)0.0022 (7)0.0023 (6)0.0001 (8)
Geometric parameters (Å, º) top
N1—C21.330 (2)C11—H11A0.9900
N1—C51.454 (2)C11—H11B0.9900
N1—H1N0.85 (2)C12—C131.528 (2)
C2—O21.219 (2)C12—H12A0.9900
C2—O31.3575 (19)C12—H12B0.9900
O3—C41.456 (2)C13—C141.526 (2)
C4—C81.519 (2)C13—H13A0.9900
C4—C51.549 (2)C13—H13B0.9900
C4—H41.0000C14—C151.526 (2)
C5—C61.522 (2)C14—H14A0.9900
C5—H51.0000C14—H14B0.9900
C6—O61.4283 (19)C15—C161.525 (2)
C6—C71.526 (2)C15—H15A0.9900
C6—H61.0000C15—H15B0.9900
O6—H6O0.88 (2)C16—C171.528 (2)
C7—O71.434 (2)C16—H16A0.9900
C7—H7A0.9900C16—H16B0.9900
C7—H7B0.9900C17—C181.526 (2)
O7—H7O0.77 (3)C17—H17A0.9900
C8—C91.530 (2)C17—H17B0.9900
C8—H8A0.9900C18—C191.528 (2)
C8—H8B0.9900C18—H18A0.9900
C9—C101.530 (2)C18—H18B0.9900
C9—H9A0.9900C19—C201.525 (2)
C9—H9B0.9900C19—H19A0.9900
C10—C111.524 (2)C19—H19B0.9900
C10—H10A0.9900C20—H20A0.9800
C10—H10B0.9900C20—H20B0.9800
C11—C121.527 (2)C20—H20C0.9800
C2—N1—C5113.21 (13)H11A—C11—H11B107.7
C2—N1—H1N119.8 (16)C11—C12—C13113.29 (15)
C5—N1—H1N126.9 (16)C11—C12—H12A108.9
O2—C2—N1128.62 (15)C13—C12—H12A108.9
O2—C2—O3121.44 (15)C11—C12—H12B108.9
N1—C2—O3109.94 (14)C13—C12—H12B108.9
C2—O3—C4108.28 (12)H12A—C12—H12B107.7
O3—C4—C8108.67 (13)C14—C13—C12113.33 (15)
O3—C4—C5104.48 (11)C14—C13—H13A108.9
C8—C4—C5119.62 (14)C12—C13—H13A108.9
O3—C4—H4107.9C14—C13—H13B108.9
C8—C4—H4107.9C12—C13—H13B108.9
C5—C4—H4107.9H13A—C13—H13B107.7
N1—C5—C6113.34 (12)C13—C14—C15113.13 (15)
N1—C5—C498.57 (13)C13—C14—H14A109.0
C6—C5—C4118.13 (12)C15—C14—H14A109.0
N1—C5—H5108.7C13—C14—H14B109.0
C6—C5—H5108.7C15—C14—H14B109.0
C4—C5—H5108.7H14A—C14—H14B107.8
O6—C6—C5109.07 (13)C16—C15—C14113.67 (15)
O6—C6—C7109.51 (12)C16—C15—H15A108.8
C5—C6—C7111.29 (12)C14—C15—H15A108.8
O6—C6—H6109.0C16—C15—H15B108.8
C5—C6—H6109.0C14—C15—H15B108.8
C7—C6—H6109.0H15A—C15—H15B107.7
C6—O6—H6O105.3 (16)C15—C16—C17113.22 (15)
O7—C7—C6111.56 (12)C15—C16—H16A108.9
O7—C7—H7A109.3C17—C16—H16A108.9
C6—C7—H7A109.3C15—C16—H16B108.9
O7—C7—H7B109.3C17—C16—H16B108.9
C6—C7—H7B109.3H16A—C16—H16B107.7
H7A—C7—H7B108.0C18—C17—C16113.89 (15)
C7—O7—H7O102.4 (16)C18—C17—H17A108.8
C4—C8—C9111.28 (14)C16—C17—H17A108.8
C4—C8—H8A109.4C18—C17—H17B108.8
C9—C8—H8A109.4C16—C17—H17B108.8
C4—C8—H8B109.4H17A—C17—H17B107.7
C9—C8—H8B109.4C17—C18—C19113.09 (14)
H8A—C8—H8B108.0C17—C18—H18A109.0
C8—C9—C10113.76 (15)C19—C18—H18A109.0
C8—C9—H9A108.8C17—C18—H18B109.0
C10—C9—H9A108.8C19—C18—H18B109.0
C8—C9—H9B108.8H18A—C18—H18B107.8
C10—C9—H9B108.8C20—C19—C18112.62 (14)
H9A—C9—H9B107.7C20—C19—H19A109.1
C11—C10—C9113.08 (14)C18—C19—H19A109.1
C11—C10—H10A109.0C20—C19—H19B109.1
C9—C10—H10A109.0C18—C19—H19B109.1
C11—C10—H10B109.0H19A—C19—H19B107.8
C9—C10—H10B109.0C19—C20—H20A109.5
H10A—C10—H10B107.8C19—C20—H20B109.5
C10—C11—C12113.43 (15)H20A—C20—H20B109.5
C10—C11—H11A108.9C19—C20—H20C109.5
C12—C11—H11A108.9H20A—C20—H20C109.5
C10—C11—H11B108.9H20B—C20—H20C109.5
C12—C11—H11B108.9
C5—N1—C2—O2171.24 (16)O6—C6—C7—O7179.55 (13)
C5—N1—C2—O39.64 (18)C5—C6—C7—O759.78 (17)
O2—C2—O3—C4172.31 (14)O3—C4—C8—C967.09 (16)
N1—C2—O3—C46.88 (17)C5—C4—C8—C9173.19 (13)
C2—O3—C4—C8147.84 (12)C4—C8—C9—C10178.45 (14)
C2—O3—C4—C519.08 (15)C8—C9—C10—C11175.90 (14)
C2—N1—C5—C6105.62 (15)C9—C10—C11—C12179.56 (14)
C2—N1—C5—C420.13 (16)C10—C11—C12—C13178.45 (14)
O3—C4—C5—N122.39 (14)C11—C12—C13—C14179.32 (14)
C8—C4—C5—N1144.21 (14)C12—C13—C14—C15179.81 (15)
O3—C4—C5—C699.94 (15)C13—C14—C15—C16179.16 (15)
C8—C4—C5—C621.9 (2)C14—C15—C16—C17178.97 (14)
N1—C5—C6—O658.29 (15)C15—C16—C17—C18179.19 (15)
C4—C5—C6—O656.21 (17)C16—C17—C18—C19177.59 (14)
N1—C5—C6—C762.64 (17)C17—C18—C19—C20178.74 (15)
C4—C5—C6—C7177.14 (14)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···O7i0.85 (2)2.07 (2)2.9005 (17)167.2 (18)
O6—H6O···O7ii0.88 (2)2.25 (2)3.1025 (17)165 (2)
O7—H7O···O2iii0.77 (3)1.95 (3)2.6997 (17)161 (2)
Symmetry codes: (i) x+3, y1/2, z+2; (ii) x1, y, z; (iii) x, y+1, z.

Experimental details

Crystal data
Chemical formulaC18H35NO4
Mr329.47
Crystal system, space groupMonoclinic, P21
Temperature (K)123
a, b, c (Å)5.4040 (2), 7.6062 (4), 22.1898 (11)
β (°) 94.208 (3)
V3)909.63 (7)
Z2
Radiation typeMo Kα
µ (mm1)0.08
Crystal size (mm)0.50 × 0.40 × 0.02
Data collection
DiffractometerNonius KappaCCD
diffractometer
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
10314, 2337, 2037
Rint0.043
(sin θ/λ)max1)0.666
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.034, 0.084, 1.01
No. of reflections2337
No. of parameters217
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.22, 0.21
Absolute structureFlack (1983), 2076 Friedel pairs
Absolute structure parameter0.6 (10)

Computer programs: COLLECT (Nonius, 1997-2000), DENZO–SMN (Otwinowski & Minor, 1997), DENZO–SMN, SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 1997), SHELXTL-NT (Sheldrick, 2001), SHELXL97.

Selected geometric parameters (Å, º) top
N1—C21.330 (2)C4—C81.519 (2)
N1—C51.454 (2)C4—C51.549 (2)
C2—O31.3575 (19)C5—C61.522 (2)
O3—C41.456 (2)
C2—N1—C5113.21 (13)C8—C4—C5119.62 (14)
N1—C2—O3109.94 (14)N1—C5—C6113.34 (12)
C2—O3—C4108.28 (12)N1—C5—C498.57 (13)
O3—C4—C8108.67 (13)C6—C5—C4118.13 (12)
O3—C4—C5104.48 (11)C4—C8—C9111.28 (14)
C5—N1—C2—O39.64 (18)N1—C5—C6—O658.29 (15)
N1—C2—O3—C46.88 (17)C4—C5—C6—C7177.14 (14)
C2—O3—C4—C519.08 (15)O6—C6—C7—O7179.55 (13)
C2—N1—C5—C420.13 (16)C5—C6—C7—O759.78 (17)
O3—C4—C5—N122.39 (14)C5—C4—C8—C9173.19 (13)
C8—C4—C5—C621.9 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···O7i0.85 (2)2.07 (2)2.9005 (17)167.2 (18)
O6—H6O···O7ii0.88 (2)2.25 (2)3.1025 (17)165 (2)
O7—H7O···O2iii0.77 (3)1.95 (3)2.6997 (17)161 (2)
Symmetry codes: (i) x+3, y1/2, z+2; (ii) x1, y, z; (iii) x, y+1, z.
 

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