Acta Crystallographica Section B

Structural Science

Volume 55, Part 6 (December 1999)


research papers



Acta Cryst. (1999). B55, 963-974    [ doi:10.1107/S0108768199003547 ]

Intramolecular and intermolecular geometry of thiophenes with oxygen-containing substituents

A. J. Blake, B. A. J. Clark, H. Gierens, R. O. Gould, G. A. Hunter, H. McNab, M. Morrow and C. C. Sommerville

Abstract: The intramolecular and intermolecular geometries of six thiophenes carrying oxygen-containing substituents have been determined. Crystals of 2-methoxythiophene and 3-methoxythiophene were grown in situ on a diffractometer from liquid samples. The 2-methoxy group introduces significant distortions to the thiophene nucleus and each molecule participates in four S\cdotsO contacts leading to an infinite bilayer. The extended structure of 3-methoxythiophene comprises zigzag chains of molecules linked by S\cdotsO contacts. Molecules of 2-acetyl-3-methoxythiophene are arranged in pairs about inversion centres, with ring centroids 3.835 Å apart. 5-Cyano-3-hydroxythiophene adopts the hydroxythiophene tautomeric form which allows conjugation between the S atom and the nitrile group: O-H\cdotsN hydrogen bonding leads to chains which are cross-linked by S\cdotsO contacts to give infinite two-dimensional layers. 5-(Methylthio)thiophen-3(2H)-one exists exclusively as the thiophen-3(2H)-one form in the solid state, allowing maximum conjugative interaction of both the ring heteroatom and the substituent with the carbonyl group: each molecule is linked to two of its neighbours through pairwise C-H\cdotsO interactions, forming ribbons. Spiro[cyclohexane-1,2'-2',3'-dihydrothiophen]-3'-one crystallizes with four independent molecules in the asymmetric unit with only minor differences between these: the five- and six-membered rings in each molecule are approximately orthogonal and C-H\cdotsO hydrogen bonding generates chains. The last two structures differ from the others in that they lack a fully aromatic thiophene system.

Keywords: Thiophene; Geometry.

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